View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10567_low_12 (Length: 311)
Name: NF10567_low_12
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 295
Target Start/End: Original strand, 39241231 - 39241501
Alignment:
| Q |
15 |
gacattggagttcgcccctttattgccacattagtgaacaatatatggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagac |
114 |
Q |
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| T |
39241231 |
gacattggagttcgcccctttattgccgcatcagtgaacaatatatggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagac |
39241330 |
T |
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| Q |
115 |
tgatgactgaaactcatctgaaaagaccaataagaaatgttgtgcttacagttccagtttcattcagttgtttccagctgacccgcctagagcatgcttg |
214 |
Q |
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| T |
39241331 |
tgatgactgaaactcatctgaaacgaccaataagaaatgttgtgcttacagttccagtttcattcagt----------cgacccgcctagagcgtgcttg |
39241420 |
T |
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| Q |
215 |
tgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaacataa |
295 |
Q |
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| T |
39241421 |
tgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaacataa |
39241501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 807573 - 807850
Alignment:
| Q |
15 |
gacattggagttcgcccctttattgccacattagtgaacaatatatggagatccaccagtccagaagaagtgcttgcaatgtttctggtggagctaagac |
114 |
Q |
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| T |
807573 |
gacattggcgttcgtccctttattgctgcgttagtgaacaatgtttggagatccaccactcccgaagaagtccttgcaatgtttctggtggagttaagac |
807672 |
T |
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| Q |
115 |
tgatgactgaaactcatctgaaaagaccaataagaaatgttgtgcttacagttccagtttcattcagttgtttccagctgacccgcctagagcatgcttg |
214 |
Q |
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| T |
807673 |
tgatgactgaaactcatctcaaacgaccgataagaaatgtggtgcttactgtgccggtttcattcagtcgcttccagctgacccgcttagagcgtgcttg |
807772 |
T |
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| Q |
215 |
tgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaaca |
292 |
Q |
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| T |
807773 |
cgcgatggctggtcttcatgttctcaggttgatgcctgaaccaacagcagtggcgttattatatggacagcaacaaca |
807850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 47880001 - 47879938
Alignment:
| Q |
121 |
ctgaaactcatctgaaaagaccaataagaaatgttgtgcttacagttccagtttcattcagttg |
184 |
Q |
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| T |
47880001 |
ctgaaactcaactgaaacgacggataagaaatgtagtgtttacagttccagtttccttcagttg |
47879938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 290
Target Start/End: Original strand, 47842618 - 47842696
Alignment:
| Q |
212 |
ttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaa |
290 |
Q |
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| T |
47842618 |
ttgtgcaaaggccggtctttatgatctcaagctgatgcctcaaccaacagcagtggctttgttgtatgcacagcaacaa |
47842696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 291
Target Start/End: Complemental strand, 44728301 - 44728220
Alignment:
| Q |
210 |
gcttgtgcgatggctggtcttcatgttcttaggctgatgcctgaaccaacagctgtggcattgttatatgcacagcaacaac |
291 |
Q |
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| T |
44728301 |
gcttgtgagatggccggtctaaaagttattagactgatgcctgaaccaacagcagtggctttgctttatgcacatcaacaac |
44728220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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