View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10567_low_17 (Length: 268)
Name: NF10567_low_17
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_17 |
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| [»] scaffold0056 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 22985769 - 22985518
Alignment:
| Q |
1 |
ctcatcagattattgttcatcaaatggcaatgcatggaacttctctcttggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccaga |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22985769 |
ctcatcagattagtgttcatcaaatggcaatgcatggaacttctctcctggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccaga |
22985670 |
T |
|
| Q |
101 |
acaatatcttcaaccgaatcaagaccttgttgtagtatgtaacacaacttctttaccaaaagttccggtaatcgatctgcataaattgttgtctaatgat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
22985669 |
acaatatcttcaaccgaatcaagaccttgttgttgtatgtaacacaacttctttaccaaaagttccggtaatcaatctgcataaattgttgtctaatgat |
22985570 |
T |
|
| Q |
201 |
acaattgagctggaaaatttcgaccatgcatgcagagaatggggtttctttc |
252 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
22985569 |
acaattgagctggaaaatttcgaccatgcctgcagagaatggggtttctttc |
22985518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 21347849 - 21348078
Alignment:
| Q |
23 |
aatggcaatgcatggaacttctctcttggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttcaaccgaatcaa |
122 |
Q |
| |
|
|||||| ||| | ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| || |||||| |
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| T |
21347849 |
aatggctatgaagggaacctctctcctggttccttctgttcaagagttagtaaaacaacccattaccaatattccagaacgatatcttcatccaaatcaa |
21347948 |
T |
|
| Q |
123 |
gaccttgttgtagtatgtaacacaacttctttaccaaaagttccggtaatcgatctgcataaattgttgtctaatgatacaattgagctggaaaatttcg |
222 |
Q |
| |
|
|||| | ||| || | |||||||| ||||||||| ||||||| || ||||| |||||||||||||||||| ||||| ||| |||||| ||||||| | |
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| T |
21347949 |
gaccctattgctgtttctaacacaagctctttaccacaagttcctgttatcgacctgcataaattgttgtctgatgatgcaactgagctacaaaattttg |
21348048 |
T |
|
| Q |
223 |
accatgcatgcagagaatggggtttctttc |
252 |
Q |
| |
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||||||| ||||||| ||||||||||||| |
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| T |
21348049 |
accatgcttgcagaggctggggtttctttc |
21348078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 22932131 - 22932330
Alignment:
| Q |
51 |
gttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttcaaccgaatcaagaccttgttgtagtatgtaacacaactt |
150 |
Q |
| |
|
||||||||||||||||||||| |||||||||| || || | ||||||||| |||| | || | ||||| ||| | |||| ||| ||||||||||| |
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|
| T |
22932131 |
gttccttctgttcaagagttaataaaacaaccaattactgagattccagaacgatatttccattcaaatcaggacactattgttgtaactaacacaactt |
22932230 |
T |
|
| Q |
151 |
ctttaccaaaagttccggtaatcgatctgcataaattgttgtctaatgatacaattgagctggaaaatttcgaccatgcatgcagagaatggggtttctt |
250 |
Q |
| |
|
|||||||| | ||||| | || || |||||||||||||||||| ||||| || |||||| ||||| ||||||| |||||| ||||||||||||||| |
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|
| T |
22932231 |
ctttaccacatgttcctattattgacctgcataaattgttgtctgatgattcagctgagctagaaaagctcgaccaaacatgcaaagaatggggtttctt |
22932330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 21209189 - 21209259
Alignment:
| Q |
42 |
tctctcttggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttca |
112 |
Q |
| |
|
||||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
21209189 |
tctctcttggtgccttctgtacaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttca |
21209259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 22973496 - 22973334
Alignment:
| Q |
90 |
aaagttccagaacaatatcttcaaccgaatcaagaccttgttgtagtatgtaacacaacttctttaccaaaagttccggtaatcgatctgcataaattgt |
189 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | | || | |||| |||||||||||| ||||||||| | || || |||||||| |||||||| |
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|
| T |
22973496 |
aaagttccagaacaatatcttcaaccaaatcaagatcctatttttgtatctaacacaacttccttaccaaaactcccagttatcgatcttagtaaattgt |
22973397 |
T |
|
| Q |
190 |
tgtctaatgatacaattgagctggaaaatttcgaccatgcatgcagagaatggggtttctttc |
252 |
Q |
| |
|
| | | | ||| || ||||| | || || | |||||||| |||| |||||||||||||||| |
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| T |
22973396 |
tatgtgaagattcagttgagttagagaagctagaccatgcttgcaaggaatggggtttctttc |
22973334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 22927663 - 22927698
Alignment:
| Q |
91 |
aagttccagaacaatatcttcaaccgaatcaagacc |
126 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
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|
| T |
22927663 |
aagttccagaacaatatcttcaaccaaatcaagacc |
22927698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 21318045 - 21318113
Alignment:
| Q |
90 |
aaagttccagaacaatatcttcaaccgaatcaagaccttgttgtagtatgtaacacaacttctttacca |
158 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||| | || | |||| ||||||||| |||| |||| |
|
|
| T |
21318045 |
aaagttcccgaacaatatcttcaaccaaatcaagactctattcttgtatctaacacaacatcttcacca |
21318113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 26915635 - 26915417
Alignment:
| Q |
35 |
tggaacttctctcttggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttcaaccgaatcaagaccttgttgta |
134 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||||| |||| |||| | || ||||| | | |||| |
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|
| T |
26915635 |
tggaacatctctcttggttccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaaccaagaaccttctgta |
26915536 |
T |
|
| Q |
135 |
gtatgtaacacaacttctttaccaaaagttccggtaatcgatctgcataaattgttgtct---aatgatacaattgagctggaaaatttcgaccatgcat |
231 |
Q |
| |
|
|||| || ||||| ||||||||| ||||||| || |||||| || | || || |||||| | ||| || ||| || ||||| ||||| ||||||| |
|
|
| T |
26915535 |
gtatctagcacaatctctttaccacaagttccagtcatcgatttgaagaagttattgtctgaagaagatggaactgaactagaaaaattcgatcatgcat |
26915436 |
T |
|
| Q |
232 |
gcagagaatggggtttctt |
250 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
26915435 |
gcaaagaatggggtttctt |
26915417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 73933 - 73875
Alignment:
| Q |
54 |
ccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttca |
112 |
Q |
| |
|
||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
73933 |
ccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttca |
73875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 5232 - 5300
Alignment:
| Q |
90 |
aaagttccagaacaatatcttcaaccgaatcaagaccttgttgtagtatgtaacacaacttctttacca |
158 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| | |||| |||| ||||||||| ||||||||| |
|
|
| T |
5232 |
aaagttccaaaacaatatcttcaaccaaatcaagaccctattgttgtatctaacacaacctctttacca |
5300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 219326 - 219291
Alignment:
| Q |
90 |
aaagttccagaacaatatcttcaaccgaatcaagac |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
219326 |
aaagttccagaacaatatcttcaaccaaatcaagac |
219291 |
T |
|
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