View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10567_low_28 (Length: 222)
Name: NF10567_low_28
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 25866165 - 25865979
Alignment:
| Q |
17 |
acatttaaagtaagatcaattaattgcaactcaatttcattaaaaagttactatatagtttaaaatatactcctcatatttatttattttgtgtattgca |
116 |
Q |
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| T |
25866165 |
acatttaaagtaagatcaattaattgcaactcaatttcattaaaaagttactatatagtttaaaatatactcttcatatttatttattttgtgtattgca |
25866066 |
T |
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| Q |
117 |
gttgtggagaataaacaaagaaactttcagattcaaggtgtttaataaacaatttgtggggttggatggatacaacgttgttgctgt |
203 |
Q |
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| T |
25866065 |
gttgtggagaataaacaaagaaactttcagatttagggtgtttaacaaacaatttgtggggttggatggatataacgttgttgctgt |
25865979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 25817249 - 25817053
Alignment:
| Q |
17 |
acatttaaagtaagatcaattaattgcaactcaatttcattaaaaagtta-----------ctatatagtttaaaatatactcctcatatttatttattt |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
25817249 |
acatttagagtaagatcaattaattgcaactcaatttcattaaaaagttagtaatacattactatatagtttaaa-tatactcctcatatttatttattt |
25817151 |
T |
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| Q |
106 |
tgtgtattgcagttgtggagaataaacaaagaaactttcagattcaaggtgtttaataaacaatttgtggggttggatggatacaacgttgttgctgt |
203 |
Q |
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| T |
25817150 |
tgtgtattgcagttgtggagaataaacaaagaaactttcagatttaaggtgtttaacaaacaatttgtggggttggatggatataacgttgttgctgt |
25817053 |
T |
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