View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10567_low_3 (Length: 432)
Name: NF10567_low_3
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10567_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 15)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Complemental strand, 30431323 - 30430912
Alignment:
| Q |
14 |
aatttgaacacaaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30431323 |
aatttgaacataaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
30431224 |
T |
|
| Q |
114 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30431223 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatga |
30431124 |
T |
|
| Q |
214 |
ttaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcacttatttaatgatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30431123 |
ttaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttattttctccgaatgtgatttctcacttatttaatgatt |
30431024 |
T |
|
| Q |
314 |
aatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgatcatcatgcacaaaatcaatc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30431023 |
aatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgatcatcacgcacaaaatcaatc |
30430924 |
T |
|
| Q |
414 |
ggattcttctct |
425 |
Q |
| |
|
| |||||||||| |
|
|
| T |
30430923 |
gaattcttctct |
30430912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 30419450 - 30419084
Alignment:
| Q |
14 |
aatttgaacacaaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| ||| ||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
30419450 |
aatttgaacacaaaaataatataaacatatttaaattt------ctgaaaagttttcatac-attgactataacatggtgtggtacaaatatttggttct |
30419358 |
T |
|
| Q |
114 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatga |
213 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30419357 |
ttaaccatttagttaaattatttattgagttttatgcttatacaaacacaaatgtagggatggatcaatctattaaatatatgtcaatcatcttggatga |
30419258 |
T |
|
| Q |
214 |
ttaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtga-tttctcacttatttaatgat |
312 |
Q |
| |
|
|||||| |||||||||| |||||||| | | |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
30419257 |
ttaatc-tttgtaaatgccaacttaatccccaagttgataaaactattatttttatcaatttgttttctccgaatgtgattttctcacttatttaatgat |
30419159 |
T |
|
| Q |
313 |
taatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcct |
387 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
30419158 |
caatatttttgtatccatgatgtagaaaaagaagaagtcactagtaaggaatgaagcaagaatgactcattgcct |
30419084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 177 - 386
Target Start/End: Complemental strand, 30416005 - 30415796
Alignment:
| Q |
177 |
atcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttg |
276 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||||||||||||| |
|
|
| T |
30416005 |
atcaatctattaaatacatgttaatcatctaggatgattaatcttt-gtaaatgccaacttaatccccaagttgataaaactattatttttaccaatttg |
30415907 |
T |
|
| Q |
277 |
ttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaat |
375 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| |||||||||||||| |
|
|
| T |
30415906 |
ttttctctgaatgcgattttctcacttatttaatgattaatatttttgtatccatgatgcagaaaaagaagaagtcactagtaaggaaagaagcaagaat |
30415807 |
T |
|
| Q |
376 |
gactcattgcc |
386 |
Q |
| |
|
||||||||||| |
|
|
| T |
30415806 |
gactcattgcc |
30415796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 65 - 280
Target Start/End: Complemental strand, 30429559 - 30429345
Alignment:
| Q |
65 |
gttttcatacgattaactataatatggtgtggcacaaatgtttggttctttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaa |
164 |
Q |
| |
|
|||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| |||| ||| |
|
|
| T |
30429559 |
gttttcatacgattgactataacatggagtagcacaaatgtttggttctttaaccatttagctaaagatttgattgtggtttatgcatataaaaattcaa |
30429460 |
T |
|
| Q |
165 |
atgtaaggatggatcaatctattaaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatt |
264 |
Q |
| |
|
|||| |||||||||||| | |||| || || |||||||||| |||| |||| || |||||||| ||| | ||||| || || |||||||| ||||||| |
|
|
| T |
30429459 |
atgttgggatggatcaatatcttaattagatctcaatcatcttagattattagtc-tttgtaaaggtccatttaagatccaaactgataaaattattatt |
30429361 |
T |
|
| Q |
265 |
tttaccaatttgtttt |
280 |
Q |
| |
|
||||||| ||| |||| |
|
|
| T |
30429360 |
tttaccattttttttt |
30429345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 30431834 - 30431528
Alignment:
| Q |
14 |
aatttgaacacaaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||||||| ||||||| || ||| || ||||||||||| |||| |
|
|
| T |
30431834 |
aatttgaacacaaaaataatttaaacata----aatttcattaacatataagttttcatacgattgactataacatagtgcggtacaaatgtttgtttct |
30431739 |
T |
|
| Q |
114 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||| |||| | || |||||||||| | |||| |
|
|
| T |
30431738 |
ttaaccatttagttaaagattttattgaggtttatg--------aatacaaacgttgggatggat--atctcttaagaagatctcaatcatctcacatga |
30431649 |
T |
|
| Q |
214 |
ttaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtga-tttctcacttatttaatgat |
312 |
Q |
| |
|
||| || |||||||| ||| ||||||| | |||||||||||| || |||||||||||||| ||||| || | ||| |||||||||||||||| |
|
|
| T |
30431648 |
ttagtc-tttgtaaaggtcgacttaagacc-------ataaaactatta-ttataccaatttgtttttcctgaacgtcattttttcacttatttaatgat |
30431558 |
T |
|
| Q |
313 |
taatatttttgtatccatgatgctgaagaa |
342 |
Q |
| |
|
||||||||| |||||||| ||| |||||| |
|
|
| T |
30431557 |
taatattttcatatccatgttgcagaagaa |
30431528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 30447474 - 30447120
Alignment:
| Q |
14 |
aatttgaacacaaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||| | | ||||||||| |||| |||||| ||||| || ||||||||||||| ||| |
|
|
| T |
30447474 |
aatttgaacacaaaaataatgtaaatata----aatttcattaacatacatgttttcatatgatttactatagcatggtatgtcacaaatgtttggctct |
30447379 |
T |
|
| Q |
114 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctattaaatatatgtcaatcatctaagatga |
213 |
Q |
| |
|
| |||||||| ||||||||||| |||| ||||||||| |||| ||||| |||| | ||||| |||||||| ||||||| | |||||||||| |||||| |
|
|
| T |
30447378 |
tgaaccattttgttaaagatttgattgtggtttatgcatatagaaatataaat-tttggatgcatcaatctcttaaataggtctcaatcatctcagatga |
30447280 |
T |
|
| Q |
214 |
ttaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttc--tctgaatgtgatttctcacttatttaatga |
311 |
Q |
| |
|
||| ||| | ||| ||| |||||| | ||| | |||||||||||||||||||||||| ||||| || ||||| ||||| | |||||||||||| |
|
|
| T |
30447279 |
ttagtctatgtaaaaggtcgacttaaaacccaagctaataaaactattatttttaccaattatttttctgtcataatgtcatttcacgcttatttaatga |
30447180 |
T |
|
| Q |
312 |
ttaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaa |
374 |
Q |
| |
|
|| |||| || ||| | ||| || |||| ||||| ||||||||||||||| ||| ||||| |
|
|
| T |
30447179 |
ttgatatcattatatgc---atgttgtagaagaagaattcactagtaagaaaaaaagaaagaa |
30447120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 247 - 342
Target Start/End: Complemental strand, 30448219 - 30448121
Alignment:
| Q |
247 |
gttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcact---tatttaatgattaatatttttgtatccatgatgctgaagaa |
342 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| | |||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
30448219 |
gttgataaaactattatatttaccaatttgttttctccgaatattatttctcacttattatttaatgattaatatttttgtatccatgttgcagaagaa |
30448121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 30430799 - 30430694
Alignment:
| Q |
45 |
taaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttctttaaccatttagttaaagattttattgaggt |
144 |
Q |
| |
|
||||||| ||||| |||| |||||||||| ||| ||||||| ||||||||| ||||| | ||||| ||||||||||||||||||||| || |||| ||| |
|
|
| T |
30430799 |
taaatttcattaacggatatgttttcatactattgactataacatggtgtggtacaaaagcttggtactttaaccatttagttaaagaattgattgtggt |
30430700 |
T |
|
| Q |
145 |
ttatgc |
150 |
Q |
| |
|
||||| |
|
|
| T |
30430699 |
atatgc |
30430694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 88 - 342
Target Start/End: Complemental strand, 30430244 - 30429991
Alignment:
| Q |
88 |
atggtgtggcacaaatgtttggttctttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaaggatggatcaatctatt |
187 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| |||| ||||||||||| |||| |||||||| |||| |||| ||||| | ||||| | |||| | || |
|
|
| T |
30430244 |
atggtgtgtcacaaatgtttgggtctttaacaattttgttaaagatttgattgttgtttatgcatatagaaatgcaaat-ttgggatgcaccaatatctt |
30430146 |
T |
|
| Q |
188 |
aaatatatgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaacta-ttatttttaccaatttgttttctctga |
286 |
Q |
| |
|
||||| || |||||||||| ||||| ||| ||| |||| || ||| || || || ||||||||||| || |||||||||| ||||||| | || |
|
|
| T |
30430145 |
aaatagatctcaatcatctcagatggccgatc-tttataaaggttgactaaaaatccaaagtgataaaactatttctttttaccaa-ttgtttttttaga |
30430048 |
T |
|
| Q |
287 |
atgtga-tttctcacttatttaatgattaatatttttgtatccatgatgctgaagaa |
342 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| || ||| |||| ||| |||||| |
|
|
| T |
30430047 |
atgtcattttctcacttatttaatgattaatattgttttatgcatgttgcagaagaa |
30429991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 30414887 - 30414757
Alignment:
| Q |
17 |
ttgaacacaaaaataatgtaaacatatttaaattttgttaactgataa--gttttcatacgattaactataatatggtgtggcacaaatgtttggttctt |
114 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| | ||||||| |||||||| ||| ||| | ||||||| |
|
|
| T |
30414887 |
ttgaacacaaaaataatgtaaacata----aattttgttaaccaatatatgttttcatacggctgactataaaatggtgtgcaacatatgctcggttctt |
30414792 |
T |
|
| Q |
115 |
taaccatttagttaaagattttattgaggtttatgc |
150 |
Q |
| |
|
|||| |||||||||||||||| |||| ||| ||||| |
|
|
| T |
30414791 |
taac-atttagttaaagatttgattgtggtatatgc |
30414757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 30436728 - 30436659
Alignment:
| Q |
66 |
ttttcatacgattaactataatatggtgtggcacaaatgtttggttctttaaccatttagttaaagattt |
135 |
Q |
| |
|
||||||||||||| ||||||| |||||||| ||| |||| || | ||||||||||||| ||||||||||| |
|
|
| T |
30436728 |
ttttcatacgattgactataacatggtgtgacaccaatgcttagctctttaaccattttgttaaagattt |
30436659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 158
Target Start/End: Complemental strand, 30440238 - 30440189
Alignment:
| Q |
109 |
gttctttaaccatttagttaaagattttattgaggtttatgcttatacaa |
158 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||| ||||||| |
|
|
| T |
30440238 |
gttctttaaccatttagttaaagatttgattgtggtttatgcatatacaa |
30440189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 30439856 - 30439651
Alignment:
| Q |
14 |
aatttgaacacaaaaataatgtaaacatatttaaattttgttaactgataagttttcatacgattaactataatatggtgtggcacaaatgtttggttct |
113 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||| ||| |||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
30439856 |
aatttgaacgcaaaaataatgtaaaca----taaatttcattaacatatatgttttcatacgacaaactataaactgatgtggcacaaactcttggttca |
30439761 |
T |
|
| Q |
114 |
ttaaccatttagttaaagattttattgaggtttatgcttatacaaatacaaatgtaa--ggatggatcaatctattaaatatatgtcaatcatctaagat |
211 |
Q |
| |
|
||||||||||| | | |||||| |||| ||| ||| | |||| ||| | || | ||| ||||||| ||||| | ||||| || ||||||||||| ||| |
|
|
| T |
30439760 |
ttaaccatttaataatagatttaattgtggtatatacatatagaaa-aaaactataatgtgatggattaatctctaaaatagatctcaatcatctatgat |
30439662 |
T |
|
| Q |
212 |
gattaatcttt |
222 |
Q |
| |
|
||||| ||||| |
|
|
| T |
30439661 |
gattagtcttt |
30439651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 364
Target Start/End: Complemental strand, 30415141 - 30415030
Alignment:
| Q |
251 |
ataaaactattatttttaccaa----tttgttttctctgaatgtga-tttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaa |
345 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| |||| |||||||||| || |
|
|
| T |
30415141 |
ataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcacttatttaatga-------ttttgtattcatgttgctgaagaagaa |
30415049 |
T |
|
| Q |
346 |
gaaatcactagtaagaaaa |
364 |
Q |
| |
|
||| ||| || |||||||| |
|
|
| T |
30415048 |
gaagtcattattaagaaaa |
30415030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 123
Target Start/End: Complemental strand, 30415597 - 30415534
Alignment:
| Q |
60 |
gataagttttcatacgattaactataatatggtgtggcacaaatgtttggttctttaaccattt |
123 |
Q |
| |
|
|||| |||||||||| ||| ||||||| |||| |||||||||| | ||||| |||||||||||| |
|
|
| T |
30415597 |
gatatgttttcatactattgactataacatggggtggcacaaaagcttggtactttaaccattt |
30415534 |
T |
|
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