View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10567_low_30 (Length: 215)

Name: NF10567_low_30
Description: NF10567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10567_low_30
NF10567_low_30
[»] chr8 (2 HSPs)
chr8 (158-204)||(34866398-34866444)
chr8 (166-198)||(34389343-34389375)
[»] chr7 (2 HSPs)
chr7 (166-198)||(47326250-47326282)
chr7 (166-198)||(10243871-10243903)
[»] chr3 (3 HSPs)
chr3 (166-198)||(47235399-47235431)
chr3 (166-198)||(20611467-20611499)
chr3 (166-198)||(45163532-45163564)
[»] chr1 (3 HSPs)
chr1 (166-204)||(20113880-20113918)
chr1 (166-195)||(24450300-24450329)
chr1 (166-198)||(46693184-46693216)


Alignment Details
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 34866444 - 34866398
Alignment:
Q  158 cttgttaaggtgatttcctttagaagcaacctttgttacacaggttc 204  Q
    ||||||| |||||||||||||||||||||||| |||||||| |||||    
T  34866444 cttgttagggtgatttcctttagaagcaacctctgttacacgggttc 34866398  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 34389375 - 34389343
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||| ||||||||    
T  34389375 ggtgatttcctttagaagcaacctctgttacac 34389343  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 47326282 - 47326250
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||||||||||||    
T  47326282 ggtgatttcctttagaagcaacctttgttacac 47326250  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 10243871 - 10243903
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||| ||||||||    
T  10243871 ggtgatttcctttagaagcaacctctgttacac 10243903  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 47235399 - 47235431
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||||||||||||    
T  47235399 ggtgatttcctttagaagcaacctttgttacac 47235431  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 20611467 - 20611499
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||| ||||||||    
T  20611467 ggtgatttcctttagaagcaacctctgttacac 20611499  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 45163532 - 45163564
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    ||||||||||||||||||||| |||||||||||    
T  45163532 ggtgatttcctttagaagcaatctttgttacac 45163564  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 20113918 - 20113880
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacacaggttc 204  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  20113918 ggtgatttcctttagaagcaacctatgttacacgggttc 20113880  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 195
Target Start/End: Complemental strand, 24450329 - 24450300
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgtta 195  Q
    ||||||||||||||||||||||||||||||    
T  24450329 ggtgatttcctttagaagcaacctttgtta 24450300  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 46693216 - 46693184
Alignment:
Q  166 ggtgatttcctttagaagcaacctttgttacac 198  Q
    |||||||||||||||||||||||| ||||||||    
T  46693216 ggtgatttcctttagaagcaacctctgttacac 46693184  T

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