View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10568_low_2 (Length: 396)

Name: NF10568_low_2
Description: NF10568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10568_low_2
NF10568_low_2
[»] chr1 (67 HSPs)
chr1 (16-385)||(23531705-23532086)
chr1 (208-297)||(5927355-5927444)
chr1 (214-352)||(48040418-48040560)
chr1 (227-356)||(48450550-48450672)
chr1 (227-299)||(398778-398850)
chr1 (212-300)||(1486721-1486809)
chr1 (233-297)||(18556471-18556535)
chr1 (205-297)||(21378531-21378622)
chr1 (278-356)||(2218264-2218347)
chr1 (218-297)||(14359537-14359614)
chr1 (205-356)||(35702542-35702689)
chr1 (239-356)||(22881567-22881689)
chr1 (227-299)||(6427324-6427396)
chr1 (233-297)||(46348398-46348462)
chr1 (212-299)||(10577748-10577835)
chr1 (254-356)||(13436459-13436562)
chr1 (308-358)||(5944365-5944415)
chr1 (310-356)||(21365992-21366038)
chr1 (310-356)||(22515827-22515873)
chr1 (235-297)||(22515902-22515964)
chr1 (234-357)||(35919225-35919359)
chr1 (306-356)||(37598900-37598950)
chr1 (205-299)||(39130780-39130874)
chr1 (306-356)||(46940748-46940798)
chr1 (217-286)||(1262848-1262917)
chr1 (205-351)||(3490352-3490497)
chr1 (226-354)||(25452108-25452234)
chr1 (261-358)||(28460776-28460873)
chr1 (306-358)||(1704933-1704985)
chr1 (229-293)||(21366039-21366103)
chr1 (205-297)||(31014995-31015087)
chr1 (228-355)||(9103615-9103741)
chr1 (321-356)||(9630561-9630596)
chr1 (228-299)||(34298411-34298482)
chr1 (205-297)||(38078676-38078769)
chr1 (307-354)||(42359391-42359438)
chr1 (227-293)||(2896140-2896206)
chr1 (227-297)||(5376515-5376585)
chr1 (306-356)||(6427544-6427594)
chr1 (306-356)||(9828124-9828174)
chr1 (211-297)||(10572604-10572690)
chr1 (306-356)||(18337398-18337448)
chr1 (310-356)||(18556385-18556431)
chr1 (218-320)||(22794071-22794172)
chr1 (205-243)||(24577249-24577287)
chr1 (205-299)||(34315665-34315758)
chr1 (254-296)||(39953162-39953204)
chr1 (306-356)||(40917829-40917879)
chr1 (306-356)||(46348323-46348373)
chr1 (310-356)||(51410098-51410144)
chr1 (236-297)||(1705007-1705068)
chr1 (236-317)||(1815240-1815321)
chr1 (218-299)||(5898279-5898359)
chr1 (235-304)||(7353501-7353570)
chr1 (307-356)||(15765828-15765877)
chr1 (254-299)||(40181872-40181917)
chr1 (245-297)||(113291-113343)
chr1 (306-354)||(1486646-1486694)
chr1 (227-300)||(5944255-5944330)
chr1 (235-351)||(12443422-12443537)
chr1 (227-299)||(15641043-15641115)
chr1 (259-311)||(16927186-16927238)
chr1 (306-354)||(17778622-17778670)
chr1 (255-299)||(34712396-34712440)
chr1 (239-299)||(36878447-36878507)
chr1 (321-357)||(38078600-38078636)
chr1 (218-297)||(40917716-40917793)
[»] chr6 (61 HSPs)
chr6 (212-356)||(7938075-7938219)
chr6 (205-297)||(8365534-8365626)
chr6 (205-297)||(12696277-12696368)
chr6 (228-356)||(7086770-7086904)
chr6 (227-356)||(9027152-9027286)
chr6 (205-299)||(9658832-9658925)
chr6 (308-362)||(10339048-10339102)
chr6 (205-299)||(30866157-30866251)
chr6 (218-356)||(426478-426608)
chr6 (212-297)||(16766656-16766741)
chr6 (254-353)||(9025448-9025552)
chr6 (307-355)||(17841530-17841578)
chr6 (233-297)||(17841604-17841668)
chr6 (205-300)||(3398571-3398665)
chr6 (218-297)||(10770689-10770767)
chr6 (205-355)||(31959112-31959268)
chr6 (227-317)||(8776968-8777058)
chr6 (228-298)||(8805586-8805656)
chr6 (254-340)||(21924907-21924993)
chr6 (218-299)||(5732523-5732604)
chr6 (218-299)||(34073360-34073441)
chr6 (205-297)||(853874-853966)
chr6 (308-356)||(13360313-13360361)
chr6 (218-297)||(7977845-7977924)
chr6 (218-297)||(9107385-9107464)
chr6 (218-297)||(34595099-34595178)
chr6 (237-299)||(7265606-7265668)
chr6 (306-356)||(8365448-8365498)
chr6 (306-356)||(8776908-8776958)
chr6 (306-356)||(28152167-28152217)
chr6 (307-356)||(9629464-9629513)
chr6 (239-295)||(10842518-10842574)
chr6 (227-267)||(21068199-21068239)
chr6 (233-297)||(21395323-21395386)
chr6 (227-299)||(33001302-33001374)
chr6 (227-298)||(31579239-31579310)
chr6 (208-243)||(35123625-35123660)
chr6 (205-295)||(6389695-6389785)
chr6 (306-356)||(6898221-6898271)
chr6 (205-299)||(7996391-7996485)
chr6 (205-299)||(8022316-8022410)
chr6 (233-299)||(10888987-10889053)
chr6 (227-297)||(16833282-16833352)
chr6 (306-356)||(17327590-17327640)
chr6 (230-300)||(17341676-17341746)
chr6 (251-316)||(32298603-32298668)
chr6 (323-356)||(32511606-32511639)
chr6 (254-311)||(32511667-32511724)
chr6 (218-297)||(3209347-3209426)
chr6 (321-357)||(3209483-3209519)
chr6 (308-356)||(4878014-4878061)
chr6 (251-299)||(7151410-7151458)
chr6 (306-358)||(7625185-7625237)
chr6 (308-356)||(7977770-7977818)
chr6 (307-359)||(9107296-9107348)
chr6 (321-357)||(9911481-9911517)
chr6 (231-299)||(19044442-19044510)
chr6 (235-299)||(26562671-26562735)
chr6 (233-297)||(28152079-28152142)
chr6 (263-299)||(32248938-32248974)
chr6 (306-358)||(34595203-34595255)
[»] chr2 (51 HSPs)
chr2 (205-356)||(20539632-20539781)
chr2 (205-298)||(21782832-21782925)
chr2 (228-313)||(21616737-21616822)
chr2 (306-359)||(26769591-26769644)
chr2 (205-299)||(23717979-23718072)
chr2 (205-299)||(24105651-24105744)
chr2 (205-297)||(19536412-19536505)
chr2 (233-354)||(42832234-42832355)
chr2 (231-299)||(31018568-31018636)
chr2 (205-297)||(21374714-21374807)
chr2 (218-297)||(30404865-30404943)
chr2 (228-299)||(34784995-34785066)
chr2 (231-297)||(6940233-6940299)
chr2 (231-297)||(18421941-18422007)
chr2 (306-356)||(35056948-35056998)
chr2 (306-356)||(37419823-37419873)
chr2 (205-274)||(21624218-21624287)
chr2 (307-356)||(34993922-34993971)
chr2 (212-317)||(40361749-40361854)
chr2 (321-357)||(10535684-10535720)
chr2 (228-304)||(30335392-30335468)
chr2 (312-356)||(44635568-44635612)
chr2 (260-299)||(2665901-2665940)
chr2 (234-297)||(24894370-24894433)
chr2 (307-358)||(29367281-29367332)
chr2 (308-354)||(2438661-2438707)
chr2 (205-299)||(20242740-20242833)
chr2 (306-356)||(27084338-27084388)
chr2 (228-298)||(28412325-28412395)
chr2 (233-299)||(30527608-30527674)
chr2 (205-267)||(33519738-33519800)
chr2 (228-298)||(36409641-36409711)
chr2 (306-356)||(38117099-38117149)
chr2 (306-356)||(42511322-42511372)
chr2 (308-357)||(11223792-11223841)
chr2 (306-351)||(12224292-12224337)
chr2 (205-297)||(14996238-14996330)
chr2 (227-304)||(15657838-15657915)
chr2 (307-356)||(15909570-15909619)
chr2 (233-298)||(16069268-16069333)
chr2 (308-365)||(18840944-18841001)
chr2 (306-355)||(28596538-28596587)
chr2 (254-299)||(28677910-28677955)
chr2 (232-297)||(30717545-30717610)
chr2 (307-360)||(32749750-32749803)
chr2 (308-356)||(6180790-6180838)
chr2 (228-304)||(12940943-12941019)
chr2 (307-359)||(24975252-24975304)
chr2 (267-299)||(28602361-28602393)
chr2 (239-299)||(31808063-31808123)
chr2 (233-297)||(37558957-37559021)
[»] chr5 (35 HSPs)
chr5 (205-300)||(22013366-22013461)
chr5 (205-269)||(19820437-19820501)
chr5 (227-297)||(21522724-21522794)
chr5 (227-297)||(21533290-21533360)
chr5 (205-356)||(2436880-2437030)
chr5 (233-358)||(14674249-14674370)
chr5 (218-356)||(6326253-6326391)
chr5 (227-297)||(21191071-21191141)
chr5 (218-300)||(25888305-25888389)
chr5 (205-297)||(6247574-6247666)
chr5 (205-297)||(21576760-21576847)
chr5 (306-356)||(21576685-21576735)
chr5 (227-297)||(24906316-24906386)
chr5 (307-353)||(39268541-39268587)
chr5 (310-356)||(39698625-39698671)
chr5 (308-357)||(19820327-19820376)
chr5 (229-293)||(19552562-19552626)
chr5 (205-297)||(37328859-37328951)
chr5 (208-292)||(40000555-40000639)
chr5 (229-359)||(22423761-22423895)
chr5 (306-357)||(31084397-31084448)
chr5 (212-294)||(13287417-13287499)
chr5 (227-300)||(14422878-14422949)
chr5 (306-356)||(14873591-14873641)
chr5 (233-299)||(16203808-16203874)
chr5 (233-299)||(27144443-27144509)
chr5 (260-297)||(33178032-33178069)
chr5 (227-300)||(36642774-36642847)
chr5 (236-297)||(39698524-39698585)
chr5 (227-304)||(41633709-41633786)
chr5 (212-297)||(41995430-41995515)
chr5 (224-304)||(12927625-12927705)
chr5 (308-356)||(17123119-17123166)
chr5 (306-354)||(21190998-21191046)
chr5 (233-297)||(43001780-43001844)
[»] scaffold0020 (1 HSPs)
scaffold0020 (205-356)||(135263-135419)
[»] chr3 (53 HSPs)
chr3 (228-358)||(11610496-11610630)
chr3 (209-317)||(8383213-8383321)
chr3 (218-352)||(10335249-10335380)
chr3 (205-297)||(55401027-55401119)
chr3 (221-300)||(14840303-14840382)
chr3 (205-311)||(14216845-14216950)
chr3 (205-311)||(14222974-14223079)
chr3 (200-317)||(8842277-8842393)
chr3 (205-297)||(8587036-8587128)
chr3 (205-356)||(32429331-32429487)
chr3 (306-356)||(25074864-25074914)
chr3 (306-356)||(40052381-40052431)
chr3 (306-356)||(55401144-55401194)
chr3 (251-316)||(4201394-4201459)
chr3 (233-352)||(10317998-10318113)
chr3 (205-298)||(25064861-25064954)
chr3 (205-297)||(14747513-14747606)
chr3 (231-330)||(10268468-10268567)
chr3 (218-297)||(28917966-28918045)
chr3 (306-356)||(21211363-21211413)
chr3 (218-320)||(24205034-24205135)
chr3 (233-311)||(25948888-25948966)
chr3 (306-356)||(41961579-41961629)
chr3 (254-299)||(11313813-11313858)
chr3 (305-354)||(25775575-25775624)
chr3 (307-356)||(34185052-34185101)
chr3 (318-358)||(8842410-8842450)
chr3 (254-298)||(27277852-27277896)
chr3 (254-297)||(1509540-1509583)
chr3 (305-356)||(3163971-3164022)
chr3 (308-355)||(8789489-8789536)
chr3 (218-297)||(15796309-15796388)
chr3 (236-299)||(49505167-49505230)
chr3 (227-297)||(3610607-3610677)
chr3 (306-356)||(8101892-8101942)
chr3 (218-296)||(14979147-14979224)
chr3 (308-358)||(20503536-20503586)
chr3 (227-297)||(26492220-26492290)
chr3 (306-356)||(27505320-27505370)
chr3 (240-297)||(4987306-4987363)
chr3 (212-297)||(4990982-4991067)
chr3 (254-299)||(7928451-7928496)
chr3 (218-299)||(10455755-10455836)
chr3 (260-297)||(14209120-14209157)
chr3 (307-351)||(1509637-1509681)
chr3 (218-294)||(3164043-3164119)
chr3 (306-354)||(4987222-4987270)
chr3 (207-295)||(10954911-10954994)
chr3 (236-304)||(18426932-18427000)
chr3 (306-354)||(28918072-28918120)
chr3 (259-299)||(38731224-38731264)
chr3 (308-356)||(40993275-40993323)
chr3 (261-297)||(55212971-55213007)
[»] scaffold0223 (1 HSPs)
scaffold0223 (205-297)||(20124-20216)
[»] chr8 (41 HSPs)
chr8 (212-297)||(2572071-2572156)
chr8 (260-357)||(4948659-4948755)
chr8 (227-297)||(8343290-8343360)
chr8 (218-297)||(22197757-22197836)
chr8 (212-299)||(24362215-24362302)
chr8 (254-331)||(14731713-14731791)
chr8 (227-297)||(20873043-20873113)
chr8 (227-356)||(27213521-27213644)
chr8 (236-300)||(15816141-15816205)
chr8 (239-299)||(39954292-39954352)
chr8 (310-357)||(11944749-11944796)
chr8 (227-286)||(22651950-22652009)
chr8 (205-300)||(25192359-25192454)
chr8 (218-300)||(926800-926882)
chr8 (227-297)||(29510319-29510389)
chr8 (205-286)||(13436990-13437071)
chr8 (238-311)||(30077388-30077461)
chr8 (205-297)||(4298901-4298992)
chr8 (239-299)||(13844609-13844669)
chr8 (308-356)||(18407790-18407838)
chr8 (205-297)||(31556949-31557040)
chr8 (227-299)||(34222922-34222993)
chr8 (207-291)||(41838144-41838228)
chr8 (305-356)||(22204711-22204762)
chr8 (307-358)||(29447525-29447576)
chr8 (204-299)||(34451050-34451144)
chr8 (310-356)||(949205-949251)
chr8 (306-352)||(5813661-5813707)
chr8 (259-297)||(8342978-8343016)
chr8 (205-299)||(13203593-13203687)
chr8 (306-356)||(29510233-29510283)
chr8 (217-299)||(33405397-33405479)
chr8 (205-243)||(40332157-40332195)
chr8 (212-297)||(4673440-4673525)
chr8 (226-299)||(12570521-12570594)
chr8 (307-356)||(22652057-22652106)
chr8 (218-299)||(28385007-28385088)
chr8 (307-356)||(30067968-30068017)
chr8 (205-269)||(126392-126455)
chr8 (308-356)||(13397622-13397670)
chr8 (233-297)||(36450769-36450833)
[»] scaffold0003 (2 HSPs)
scaffold0003 (218-298)||(241559-241639)
scaffold0003 (306-358)||(241674-241726)
[»] chr7 (47 HSPs)
chr7 (205-297)||(24105631-24105722)
chr7 (205-297)||(27944993-27945085)
chr7 (212-297)||(24339601-24339686)
chr7 (205-294)||(43027487-43027576)
chr7 (231-297)||(11061091-11061157)
chr7 (229-356)||(30813788-30813916)
chr7 (205-293)||(2034394-2034481)
chr7 (306-356)||(5409771-5409821)
chr7 (205-299)||(7328704-7328798)
chr7 (227-297)||(13770665-13770735)
chr7 (227-317)||(25481876-25481966)
chr7 (218-299)||(17851396-17851477)
chr7 (233-349)||(18215144-18215265)
chr7 (218-299)||(19206015-19206096)
chr7 (224-300)||(4017806-4017882)
chr7 (218-286)||(11722124-11722192)
chr7 (233-317)||(15680789-15680873)
chr7 (231-299)||(18013087-18013155)
chr7 (205-297)||(33994164-33994256)
chr7 (216-299)||(5235949-5236032)
chr7 (308-355)||(20549862-20549909)
chr7 (205-297)||(21864758-21864852)
chr7 (321-356)||(32093954-32093989)
chr7 (239-286)||(45056927-45056974)
chr7 (306-356)||(598277-598327)
chr7 (229-299)||(3721070-3721139)
chr7 (306-356)||(7133212-7133262)
chr7 (306-356)||(9778574-9778624)
chr7 (314-356)||(11738151-11738193)
chr7 (306-356)||(15680878-15680928)
chr7 (306-356)||(17852069-17852119)
chr7 (261-356)||(38143231-38143318)
chr7 (306-356)||(43027404-43027454)
chr7 (307-356)||(6490786-6490835)
chr7 (307-356)||(24105748-24105797)
chr7 (228-297)||(26733279-26733348)
chr7 (254-299)||(27093426-27093471)
chr7 (254-299)||(27184830-27184875)
chr7 (308-356)||(2334331-2334379)
chr7 (321-357)||(7328638-7328674)
chr7 (261-297)||(9408349-9408385)
chr7 (227-299)||(15902796-15902868)
chr7 (254-294)||(19213804-19213844)
chr7 (310-358)||(24339726-24339774)
chr7 (209-304)||(32094028-32094124)
chr7 (307-355)||(32287404-32287452)
chr7 (308-356)||(33994283-33994331)
[»] chr4 (44 HSPs)
chr4 (228-354)||(22440559-22440684)
chr4 (308-358)||(29205539-29205589)
chr4 (306-357)||(34306743-34306794)
chr4 (227-310)||(36635298-36635381)
chr4 (254-358)||(37203265-37203373)
chr4 (306-356)||(19482748-19482798)
chr4 (254-299)||(15029766-15029811)
chr4 (212-297)||(23293001-23293086)
chr4 (212-317)||(35157980-35158085)
chr4 (308-356)||(3064868-3064916)
chr4 (308-356)||(16184902-16184950)
chr4 (205-297)||(31800493-31800585)
chr4 (228-311)||(19482643-19482726)
chr4 (306-353)||(28084593-28084640)
chr4 (308-358)||(715543-715593)
chr4 (308-358)||(752869-752919)
chr4 (276-358)||(10499225-10499306)
chr4 (306-356)||(23292926-23292976)
chr4 (212-317)||(12895269-12895374)
chr4 (218-299)||(24343472-24343553)
chr4 (207-291)||(11651155-11651239)
chr4 (308-356)||(16073465-16073513)
chr4 (306-358)||(24343582-24343634)
chr4 (254-317)||(8423713-8423776)
chr4 (321-356)||(12895214-12895249)
chr4 (305-359)||(2361912-2361966)
chr4 (226-300)||(14126123-14126197)
chr4 (310-356)||(28964188-28964234)
chr4 (251-297)||(29205442-29205488)
chr4 (254-299)||(13134451-13134496)
chr4 (306-355)||(14465006-14465055)
chr4 (307-356)||(18513175-18513224)
chr4 (307-356)||(20633541-20633590)
chr4 (228-297)||(27706192-27706261)
chr4 (306-355)||(44081508-44081557)
chr4 (260-317)||(54580018-54580075)
chr4 (245-297)||(2361990-2362042)
chr4 (205-297)||(3947781-3947872)
chr4 (227-299)||(5414185-5414257)
chr4 (261-297)||(6485626-6485662)
chr4 (308-356)||(8423658-8423706)
chr4 (308-356)||(11596297-11596345)
chr4 (233-297)||(14465090-14465154)
chr4 (307-355)||(40965341-40965389)
[»] scaffold0053 (2 HSPs)
scaffold0053 (212-297)||(8757-8842)
scaffold0053 (306-358)||(8867-8919)
[»] scaffold0027 (1 HSPs)
scaffold0027 (227-356)||(46656-46776)
[»] scaffold0022 (1 HSPs)
scaffold0022 (216-304)||(90806-90894)
[»] scaffold0008 (1 HSPs)
scaffold0008 (212-300)||(263384-263472)
[»] scaffold0361 (1 HSPs)
scaffold0361 (306-357)||(14596-14647)
[»] scaffold0171 (1 HSPs)
scaffold0171 (205-300)||(23373-23467)
[»] scaffold0306 (1 HSPs)
scaffold0306 (205-297)||(13352-13444)
[»] scaffold0152 (1 HSPs)
scaffold0152 (205-297)||(21883-21975)
[»] scaffold0103 (1 HSPs)
scaffold0103 (233-297)||(51791-51855)
[»] scaffold0018 (1 HSPs)
scaffold0018 (206-297)||(178833-178925)
[»] scaffold0793 (1 HSPs)
scaffold0793 (308-358)||(4819-4869)
[»] scaffold0652 (2 HSPs)
scaffold0652 (212-297)||(477-562)
scaffold0652 (306-355)||(403-452)
[»] scaffold0450 (1 HSPs)
scaffold0450 (306-358)||(8562-8614)
[»] scaffold0279 (1 HSPs)
scaffold0279 (205-269)||(17913-17977)
[»] scaffold0475 (1 HSPs)
scaffold0475 (313-356)||(3384-3427)
[»] scaffold0512 (1 HSPs)
scaffold0512 (306-356)||(4976-5026)
[»] scaffold0380 (1 HSPs)
scaffold0380 (306-356)||(8670-8720)
[»] scaffold0227 (1 HSPs)
scaffold0227 (260-305)||(7318-7363)
[»] scaffold0057 (1 HSPs)
scaffold0057 (307-356)||(24107-24155)
[»] scaffold0021 (2 HSPs)
scaffold0021 (212-297)||(130441-130526)
scaffold0021 (308-356)||(2978-3026)
[»] scaffold0011 (1 HSPs)
scaffold0011 (260-297)||(17764-17801)
[»] scaffold0136 (1 HSPs)
scaffold0136 (308-356)||(3778-3826)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 67)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 23532086 - 23531705
Alignment:
Q  16 attaatgatacaaacttaaagcgaacatccaaacatacaaaacaagcaggctaactattatacttggaccatgactaagaatatatattatgactaagaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23532086 attaatgatacaaacttaaagcgaacatccaaacatacaaaacaagcaggctaactattatacttgaaccatgactaagaatatatattatgactaagaa 23531987  T
Q  116 catctgaatggacaaacaaaaaagctaactactaagaacatgtactaatagcattcaaa------tagctacatactcctatactatgcaaccccatgaa 209  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||| ||||    
T  23531986 catctgaatggacaaccaaaaaagctaactactaagaacatgtactaatagcattcaaatgcagctagctacatactcctatactatgcaaccccgtgaa 23531887  T
Q  210 gcacggat------acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatg 303  Q
    ||||||||      ||||| ||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||| | ||||||||||||||    
T  23531886 gcacggatacggacacggacactggacacgatacggacaccgacacttcaatactgctaataatttgaaaatatcacataattcaatgtaattataaatg 23531787  T
Q  304 ttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatgcaacctattaaattttctctcccttt 385  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23531786 ttcgcgtccgacactgaaacacgcttaatcggaggagtgttcgtgcttcatagatgcaacctattaaattttctctcccttt 23531705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 208 - 297
Target Start/End: Complemental strand, 5927444 - 5927355
Alignment:
Q  208 aagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||| || ||||||||||||||||| ||||| | ||||||||||||||||| |||| |||| |||||||| ||||||||    
T  5927444 aagcacggatacggacaccggacacgacacggacactgacacgctaacactgctaataatttgaaaaaatcatataatttaatgtaatta 5927355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 48040560 - 48040418
Alignment:
Q  214 ggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaata-tcacataatttagtgtaattataaatgt---tcgtg 309  Q
    ||||||||| || ||||||||||||||||| ||||| || |||| | ||||||||| ||||   ||||||| |||||||||| || || |||   |||||    
T  48040560 ggatacggacaccggacacgacacggacactgacacgccgacacagataataatttgaaaaaggtcacatattttagtgtaaatacaagtgtcggtcgtg 48040461  T
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttc 352  Q
    |||||||||| |||||||||||| |||||||||| ||||||||    
T  48040460 tccgacactgggacacgcctaattggaggagtgtccgtgcttc 48040418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 227 - 356
Target Start/End: Complemental strand, 48450672 - 48450550
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacg 326  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||| |||| || ||||||||||||||||||| ||      ||||| ||||| | ||||||    
T  48450672 ggacacgacacggacactgacacgccaacacagctaataatttgaaaaaataacataatttagtgtaattacaa------gtgtcggacacag-gacacg 48450580  T
Q  327 cctaatcggaggagtgttcgtgcttcatag 356  Q
     |||||| ||||||||| ||||||||||||    
T  48450579 tctaatccgaggagtgtccgtgcttcatag 48450550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 398850 - 398778
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||||| ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  398850 ggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattata 398778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 1486809 - 1486721
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    ||||| |||||||| ||| |||||||||| || ||||| |  |||| ||||||||||| |||| ||||||||||| |||||||||||||    
T  1486809 acggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataa 1486721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 18556535 - 18556471
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||| ||||||||    
T  18556535 gacacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaatta 18556471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 21378531 - 21378622
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||| |||| |||||||||||||||||  ||||| || |||| |||||||| || |||| || |||||||| ||||||||||    
T  21378531 atgaagcacggatacagata-tggacacgacacggacatggacacaccgacacagctaataaattgaaaaaattacataattcagtgtaatta 21378622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 2218264 - 2218347
Alignment:
Q  278 cacataatttagtgtaattataaatgt-----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||||||||| || |||     ||||||||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgtccgacactaggacacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 14359614 - 14359537
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||| ||||||||||| ||||| ||||| || |||| ||||||||||| |||| ||||||||||||||||||||||    
T  14359614 acggatac-ggacacgacacagacacggacacgccgacacagctaataatttgaaaa-atcacataatttagtgtaatta 14359537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 35702689 - 35702542
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||| || ||||||||||| ||||        || |||| ||||||||||| ||||  ||| |||||| |||||||||| || |||    
T  35702689 atgaagcacggatacggacaccggacacgacactgacatg------ccgacacagctaataatttgaaaacttcaaataattaagtgtaattacaagtgt 35702596  T
Q  305 tcgtgtccgacac--tgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
      ||||| |||||  || ||||||||||||| ||||||||| ||||||||||||    
T  35702595 cagtgtcggacacgatgggacacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 356
Target Start/End: Complemental strand, 22881689 - 22881567
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc-----cgacactgagacacgcctaatc 333  Q
    ||||| ||||| || ||||  |||||||||| |||| |||||||||||||||||||||| || |||  |||||     |||||| | |||||| ||||||    
T  22881689 gacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacaccgggacacgtctaatc 22881590  T
Q  334 ggaggagtgttcgtgcttcatag 356  Q
     ||||||||| ||||||||||||    
T  22881589 cgaggagtgtccgtgcttcatag 22881567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 6427324 - 6427396
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||| ||||||||| ||||| ||||||| ||||||||||| | || ||||||||||| | ||||||||||    
T  6427324 ggacacggcacggacactgacacgccaacaccgctaataatttgagaaaatcacataattcaatgtaattata 6427396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 46348462 - 46348398
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||| ||||||||||| |||| |||| |||||||||||||||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 46348398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 10577835 - 10577748
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| || ||||||||||||||||||||||| || |||| ||||||  ||||| || |||||| |||  ||||||||||||    
T  10577835 acggacacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattata 10577748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 356
Target Start/End: Original strand, 13436459 - 13436562
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgag-acacgcctaatcggaggagtgttcgtgcttc 352  Q
    |||||||||||||||| |  | ||||||||||| ||||||||||||  |||| ||||| |||||  || ||||| |||||| ||| ||||| ||||||||    
T  13436459 acactgctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacacgtagaacacgactaatccgagaagtgtccgtgcttc 13436558  T
Q  353 atag 356  Q
    ||||    
T  13436559 atag 13436562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 5944365 - 5944415
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||| | || |||||||||| ||||||||||||||||||||||||    
T  5944365 tgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatagat 5944415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 21366038 - 21365992
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  21366038 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 21365992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 22515873 - 22515827
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  22515873 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 297
Target Start/End: Complemental strand, 22515964 - 22515902
Alignment:
Q  235 cacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| ||||| |  |||| ||||||||||| |||| ||||||||||||||||||||||    
T  22515964 cacggacacggacacgcagacacagctaataatttgaaaaaatcacataatttagtgtaatta 22515902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 357
Target Start/End: Complemental strand, 35919359 - 35919225
Alignment:
Q  234 acacggacaccgacactccaacactgctaataattttaa-----aatatcacataatttagtgtaattataaatgt-----tcgtgtccgacact-gaga 322  Q
    ||||||||||| ||||||| ||||  |||||||||| ||     || ||||||||||| ||||||||||||| |||     ||||||| |||||  | ||    
T  35919359 acacggacaccaacactccgacacatctaataatttgaagaaaaaaaatcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcggga 35919260  T
Q  323 cacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||||||| ||| |||||||||||||    
T  35919259 cacgcctaatcggaggactgtccgtgcttcataga 35919225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 37598900 - 37598950
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| || ||||||||||||| ||||||||| ||||||||||||    
T  37598900 cgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 39130874 - 39130780
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||| || |||||||||| ||| |  ||||| |  |||||  ||||||||||| || || | |||||||||||||||||||    
T  39130874 atgaagcacggatacggacaccggacacgacatggatattgacacgctgacactattaataattttagaaaattatataatttagtgtaattata 39130780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 46940798 - 46940748
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| |  |||||||||||| ||||||||||||||||||||||    
T  46940798 cgtgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatag 46940748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 1262848 - 1262917
Alignment:
Q  217 tacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatt 286  Q
    ||||||||| |||||||||||| |||| ||||| || |||| ||||||||||| | || |||||||||||    
T  1262848 tacggataccggacacgacacgaacacggacacgccgacacagctaataatttgagaaaatcacataatt 1262917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 351
Target Start/End: Complemental strand, 3490497 - 3490352
Alignment:
Q  205 atgaagcacggatacggatactggacac--gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaat 302  Q
    |||||||||||||||||||||  |||||  ||||| ||||| ||||| || |||||||||||||||| | || |  |||| ||| |||||||||| || |    
T  3490497 atgaagcacggatacggatac-agacaccggacac-gacactgacacgccgacactgctaataatttgagaaaactacattattcagtgtaattacaagt 3490400  T
Q  303 gttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgctt 351  Q
    | |||||||||||| || |||||  |||||| ||| ||||| |||||||    
T  3490399 g-tcgtgtccgacattgggacacatctaatccgagaagtgtccgtgctt 3490352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 354
Target Start/End: Complemental strand, 25452234 - 25452108
Alignment:
Q  226 tggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacac 325  Q
    |||||| ||||  ||||||||||  ||||||||||||||||||| | || ||| ||||||| |||||||||||   |||  ||||| ||||| |  ||||    
T  25452234 tggacatgacaaagacaccgacatgccaacactgctaataatttgagaaaatctcataattcagtgtaattat--gtgtcggtgtcagacaccggaacac 25452137  T
Q  326 gcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||  ||| ||||| ||||||||||    
T  25452136 gcctaattcgagcagtgtccgtgcttcat 25452108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 358
Target Start/End: Original strand, 28460776 - 28460873
Alignment:
Q  261 taataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    ||||||||| | || |||| |||||| | |||||||||| |||| |||||||||||| || |||||||||||   |  ||| ||||||||||||||||    
T  28460776 taataatttcagaaaatcaaataattaaatgtaattatatatgtacgtgtccgacaccgaaacacgcctaattttaaaagtattcgtgcttcatagat 28460873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 1704985 - 1704933
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| |||||||||||||||  |||||||| | ||||||||||||    
T  1704985 cgtgtccgacaccgagacacgcctaatccaaggagtgtccatgcttcatagat 1704933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 21366103 - 21366039
Alignment:
Q  229 acacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgta 293  Q
    |||||||||| |||||||||| ||  ||| |||||||||||||||| || |||||||| ||||||    
T  21366103 acacgacacgaacaccgacacgccggcacagctaataattttaaaaaataacataattcagtgta 21366039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 31014995 - 31015087
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||| || || || || |||||||||| ||| ||| | || |||| ||||||||||| | || ||||||||||| ||||||||||    
T  31014995 atgaagcacggacacagacaccgggcacgacacgggcactgacgcgcctacacagctaataatttgagaaaatcacataattcagtgtaatta 31015087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 9103615 - 9103741
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgc 327  Q
    |||| ||| ||||||| ||||| || |||| | ||||||||| |||| ||||||||||||||| ||| || || |||  ||||| ||||| || | ||||    
T  9103615 gacaggactcggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtttaa-tacaagtgtcggtgtcggacaccgaaaaacgc 9103713  T
Q  328 ctaatcggaggagtgttcgtgcttcata 355  Q
    ||||||  | |||||| |||||||||||    
T  9103714 ctaatcttaagagtgtccgtgcttcata 9103741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 356
Target Start/End: Complemental strand, 9630596 - 9630561
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9630596 gacacgcctaatccgaggagtgttcgtgcttcatag 9630561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 299
Target Start/End: Original strand, 34298411 - 34298482
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||| || ||||| || ||||  |||||||||| | || ||||||||||| ||||||||||||    
T  34298411 gacacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattata 34298482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 38078769 - 38078676
Alignment:
Q  205 atgaagcacggatacggatactggacac--gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||||||  |||||| |||| |||||  | |||| ||||||||||| |||| ||||||||||| | ||||||||    
T  38078769 atgaagcacggatacggacac-ggacaccggacacgaacactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaatta 38078676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 42359438 - 42359391
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    ||||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  42359438 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 293
Target Start/End: Complemental strand, 2896206 - 2896140
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgta 293  Q
    |||||| |||||||||| ||||| || |||| ||||||||||| | || ||||||||||| ||||||    
T  2896206 ggacacaacacggacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgta 2896140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 5376585 - 5376515
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||  |||| || |||| ||||||||||| | || || |||||||| ||||||||||    
T  5376585 ggacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 6427544 - 6427594
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| || |||||| ||||||||||||    
T  6427544 cgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 9828124 - 9828174
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | |||||| |||||| ||||||||| ||||||||||||    
T  9828124 cgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 10572690 - 10572604
Alignment:
Q  211 cacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||| || |||||||||| | |||| ||||| || ||||  |||||||||| | || |||||||||||  |||||||||    
T  10572690 cacggatacggacaccggacacgacatgaacactgacacgccgacaccactaataatttgagaaaatcacataattcggtgtaatta 10572604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 18337398 - 18337448
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| |||| |||| ||| ||||||||| ||||||||||||    
T  18337398 cgtgtccgacactgggacatgcctgatccgaggagtgtccgtgcttcatag 18337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 18556431 - 18556385
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| ||||||||||||| ||| ||||| ||||||||||||    
T  18556431 tccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 22794172 - 22794071
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||||| ||| ||||||  ||||| |||||  |||||| | ||||||||| |||| || |||||||  ||||||||||||  || |||||||||||||    
T  22794172 acggataccggatacgacatagacactgacacgtcaacacggataataatttgaaaaaatgacataatacagtgtaattataggtg-tcgtgtccgacac 22794074  T
Q  318 tga 320  Q
    |||    
T  22794073 tga 22794071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 24577287 - 24577249
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacac 243  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  24577287 atgaagcacggatacggacactgaacacgacacggacac 24577249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 34315665 - 34315758
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||||| ||||||||||||||| || ||||  || |||| |||||   |||||||| |  ||||||||  |||||||||||    
T  34315665 atgaagcacggatacggata-tggacacgacacggatactgacatgccgacacagctaaattttttaaaaaactacataattcggtgtaattata 34315758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 39953204 - 39953162
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaatt 296  Q
    |||| ||||||||||||| || |||||||||||||||||||||    
T  39953204 acaccgctaataattttagaaaatcacataatttagtgtaatt 39953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 40917829 - 40917879
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||||| ||| ||||||||||||    
T  40917829 cgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 46348373 - 46348323
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| ||||||||||| ||| |||| |||| ||||||||||||    
T  46348373 cgtgtccgacaccgagacacgcctgatccgaggtgtgtccgtgcttcatag 46348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 51410098 - 51410144
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| |||||||||||||||  |||||| ||||||||||||||    
T  51410098 tccgacaccgagacacgcctaatccaaggagtattcgtgcttcatag 51410144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Complemental strand, 1705068 - 1705007
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||| || ||||  |||||||||| |||| ||||||||||| || |||||||    
T  1705068 acggacaccgacacaccgacacatctaataatttgaaaaaatcacataattcagggtaatta 1705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 1815240 - 1815321
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||||| ||||| || ||||   |||| ||||||||| ||||||||||| |||||||||| || |||  |||||||||||    
T  1815240 acggacactgacacgccgacacaaataattattttaaaaaatcacataattcagtgtaattacaagtgtcggtgtccgacac 1815321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 5898359 - 5898279
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||| ||||| ||||| ||||| || || || |||| ||||||||| | |||| ||||||||||| ||||||||||||    
T  5898359 acggatac-ggacatgacacagacactgagacgccgacaccgctaataatctgaaaaaatcacataattcagtgtaattata 5898279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 304
Target Start/End: Complemental strand, 7353570 - 7353501
Alignment:
Q  235 cacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||| |||||||||| || || |||||| |||||  |||| || ||||||||||||||||||||| ||||    
T  7353570 cacgtacaccgacacaccgacgctgctattaattcgaaaaaattacataatttagtgtaattatatatgt 7353501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 15765828 - 15765877
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||| ||||||| ||||||||||||| || |||||| ||||||||||||    
T  15765828 gtgtctgacactgggacacgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 40181872 - 40181917
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||| | || ||||||||||| ||||||||||||    
T  40181872 acactgctaataatttgagaaaatcacataattcagtgtaattata 40181917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 113291 - 113343
Alignment:
Q  245 gacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  113291 gacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 113343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 1486694 - 1486646
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||||| | ||||||||||||| |||||||||  |||||||||    
T  1486694 cgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 5944255 - 5944330
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaata--tcacataatttagtgtaattataa 300  Q
    ||||||||||| ||||| ||||| ||  ||| ||||||||||| |||| |  |||||||||| |||||||||||||    
T  5944255 ggacacgacacagacactgacacgccgccacagctaataatttgaaaaaaaatcacataattcagtgtaattataa 5944330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 351
Target Start/End: Complemental strand, 12443537 - 12443422
Alignment:
Q  235 cacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcg 334  Q
    |||||| || ||||| || |||| ||||||||||| | || ||||||||||| ||||||||| ||  ||  |||||| ||||| ||||||| |||||||     
T  12443537 cacggatacggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaattgtatgtg-acgtgtcggacaccgagacacacctaatcc 12443439  T
Q  335 gaggagtgttcgtgctt 351  Q
    |||| || | |||||||    
T  12443438 gaggggtatccgtgctt 12443422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 15641115 - 15641043
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||||||||| ||||  || |||||||||||||||| | || ||||||| ||| ||||||| ||||    
T  15641115 ggacatgacacggacactgacatgccgacactgctaataatttaagaaaatcacatgattcagtgtaactata 15641043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 16927238 - 16927186
Alignment:
Q  259 gctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||||||||| |||| |||| |||||| |||||||||||| ||||| |||||    
T  16927238 gctaataatttgaaaaaatcatataattcagtgtaattatatatgttggtgtc 16927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 17778622 - 17778670
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||||| | |||| |||||||| ||| ||||||||||||||||    
T  17778622 cgtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 34712440 - 34712396
Alignment:
Q  255 cactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||| | || || |||||||||||||||||||||    
T  34712440 cactgctaataatttgagaaaataacataatttagtgtaattata 34712396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 36878447 - 36878507
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| || |||| ||||||||||| | || ||||||||||| ||||||||||||    
T  36878447 gacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattata 36878507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 38078636 - 38078600
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  38078636 gacacgcctaatccgaggagtattcgtgcttcataga 38078600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 40917716 - 40917793
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || |||||||||||||| || ||||| || |||| ||||||||||| |||| |||||  |||| ||||||||||    
T  40917716 acggacaccggacacgacacggatactgacacgccgacacagctaataatttgaaaaaatcac--aattaagtgtaatta 40917793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 61)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 212 - 356
Target Start/End: Original strand, 7938075 - 7938219
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||| ||||| || |||||||||| |||||| ||||| || |||| ||||||||||| |||| |||| |||||||||||||||||||| |||  |||||    
T  7938075 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtc 7938174  T
Q  312 cgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||| ||||||||||| ||| ||||||||| ||||||||||||    
T  7938175 cgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 8365626 - 8365534
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| ||  |||||||||||||||| ||||| || ||||  |||||||||| ||||||||||||||||  |||||||||    
T  8365626 atgaagcacggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaatta 8365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 12696277 - 12696368
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||||||||||||||||| ||||| || |||| ||||||||||| |||| || |||||||| ||||||||||    
T  12696277 atgaagcacggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 356
Target Start/End: Original strand, 7086770 - 7086904
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt-----tcgtgtccgacac-tgag 321  Q
    |||||||||| |||||||||||  |  ||||||||||||||| | || ||||||||||||||||||||||||  |||     | ||||| ||||| ||||    
T  7086770 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgtagtgtcagacacgtgag 7086869  T
Q  322 acacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||| |||||||| ||||||| | ||||||||||||    
T  7086870 acatgcctaatccgaggagtttccgtgcttcatag 7086904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 9027152 - 9027286
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt-----tcgtgtccgacactgag 321  Q
    ||||||||||||||||| ||||| || |||| ||||||||||| | |  |||||||||||  |||||||||||  |||     ||||||||||||| | |    
T  9027152 ggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatatgtgtcggtgtcgtgtccgacaccggg 9027251  T
Q  322 acacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||| ||||||  ||||||||| |||||||||||    
T  9027252 acacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 9658832 - 9658925
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||| || || | ||||||||||||||| ||||| || |||| ||||||||||| | || ||||||||||| ||||||||||||    
T  9658832 atgaagcacggatacagacacag-acacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattata 9658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 10339102 - 10339048
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatgcaa 362  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||| |||||    
T  10339102 tgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcataggtgcaa 10339048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 30866251 - 30866157
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||| ||| ||||||| || ||||| ||||| ||||||||||| ||||||| ||||||||||| | || ||||||||||| | ||||||||||    
T  30866251 atgaagtacgaatacggacaccggacatgacactgacaccgacacaccaacaccgctaataatttgagaaaatcacataattcaatgtaattata 30866157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 426608 - 426478
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||||| ||||||||||||||||| ||||| || |||| | ||||||||| |||| ||||||||||| | |||||||| || |||  |||||          
T  426608 acggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaagtgtcggtgtc------ 426515  T
Q  318 tgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
       ||||||||||||| ||||||||| ||||||||||||    
T  426514 --ggacacgcctaatctgaggagtgtccgtgcttcatag 426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 16766656 - 16766741
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || |||||||||| |||||| ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  16766656 acggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 16766741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 353
Target Start/End: Complemental strand, 9025552 - 9025448
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgt-----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtg 348  Q
    |||||||||||||||| | || ||||||||||| ||||||||||||  |||     ||||||||||||| | ||||||||||||| ||| ||||| ||||    
T  9025552 acactgctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtg 9025453  T
Q  349 cttca 353  Q
    |||||    
T  9025452 cttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 17841578 - 17841530
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  17841578 gtgtccgacactgagacacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 17841668 - 17841604
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||| ||||||||||| |||| ||||||||||||||||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaatta 17841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 3398571 - 3398665
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||| ||||||||| |  | ||||||||||||||| ||||| || |||| ||||||||||| |||| |||| |||||| |||||||||||||    
T  3398571 atgaagcatggatacggacatcgaacacgacacggacactgacacgccgacacagctaataatttgaaaa-atcatataattcagtgtaattataa 3398665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 10770767 - 10770689
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||| |||||||||| |||||| ||||| |||||||  |||||||||| |||| ||||||||||| ||||||||||    
T  10770767 acggatac-ggacacgacatggacactgacacgccaacacaactaataatttgaaaaaatcacataattcagtgtaatta 10770689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 355
Target Start/End: Original strand, 31959112 - 31959268
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||| || ||||| |||||| |||| ||||| ||  ||| ||||||||||| |||| ||||||||||  |||||||||| || |||    
T  31959112 atgaagcacggatacggacac-ggacatgacacgaacactgacacgccgtcacagctaataatttgaaaaaatcacataatgcagtgtaattacaagtgt 31959210  T
Q  305 -------tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
             ||||||||||| | ||||| ||||||| ||||||||| |||||||||||    
T  31959211 cggcgacatgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 8777058 - 8776968
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    ||||||||||||||||| ||||| || ||||  |||||||||| |||| |||||| |||| |||||||||| || |||| ||||| |||||    
T  8777058 ggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaagtgttggtgtcggacac 8776968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 8805656 - 8805586
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    |||||||||| |||||||||||  |  ||||||||||||||| | || |||||||||||||||||||||||    
T  8805656 gacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacataatttagtgtaattat 8805586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 340
Target Start/End: Complemental strand, 21924993 - 21924907
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcggaggag 340  Q
    |||||||||||||||| | ||||||| |||||| ||||||||||||  |||  ||||| ||||| | ||||||||||||| ||||||    
T  21924993 acactgctaataatttgagaatatcaaataattcagtgtaattatatgtgtcggtgtcggacaccgggacacgcctaatccgaggag 21924907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 5732604 - 5732523
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||||||||||| |||||| ||||| || |||| | ||||||||| | || |||||||| |||||||||||||||    
T  5732604 acggacactggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattata 5732523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 34073441 - 34073360
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| |||||||||||||||||||| ||||  ||||||  ||||||||||| | || ||| ||||||| ||||||||||||    
T  34073441 acggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaattata 34073360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 853966 - 853874
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| |||||||||||| || ||||||||||||||  | ||||| || ||||  |||||||||| |||| ||||||||||| |||| |||||    
T  853966 atgaatcacggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacataattaagtgcaatta 853874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 13360361 - 13360313
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||    
T  13360361 tgtccgacactgagacacgcctaatccgaagagtgtccgtgcttcatag 13360313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 7977924 - 7977845
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||||||||||| ||| || ||||| || |||| ||||||||||| |||| || |||||||| ||||||||||    
T  7977924 acggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 7977845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 9107464 - 9107385
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || |||||||||||||||||  |||| || |||| ||||||||||| |||| |||||| |||| ||||||||||    
T  9107464 acggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaatta 9107385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 34595099 - 34595178
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || ||||||||||||||||  ||||| || ||||  |||||||||| |||| ||||||||||| ||||||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatta 34595178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 299
Target Start/End: Complemental strand, 7265668 - 7265606
Alignment:
Q  237 cggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||| ||||| ||||||| ||||||||||| | || ||||||||||| ||||||||||||    
T  7265668 cggacactgacacgccaacaccgctaataatttgagaaaatcacataattcagtgtaattata 7265606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 8365498 - 8365448
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||||||||||| ||||||| | ||||||||||||    
T  8365498 cgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatag 8365448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 8776958 - 8776908
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| ||||||| ||||||| ||||||||| ||||||||||||    
T  8776958 cgtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatag 8776908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 28152167 - 28152217
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | |||| |||||||| ||||||||||||||||||||||    
T  28152167 cgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 9629464 - 9629513
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||||||||| |||||| ||||||||| | ||||||||||    
T  9629464 gtgtccgacactgagacacgtctaatccgaggagtgtccatgcttcatag 9629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 295
Target Start/End: Original strand, 10842518 - 10842574
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaat 295  Q
    ||||| ||||| || |||| ||||||||||| |||| ||||||||||||||||||||    
T  10842518 gacacggacacgccgacaccgctaataatttgaaaaaatcacataatttagtgtaat 10842574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 21068239 - 21068199
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataat 267  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  21068239 ggacacgacacagacaccgacacgccaacactgctaataat 21068199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 21395386 - 21395323
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||| |||||||||||| ||||||| ||||||||||| | || || |||||||||||||||||||    
T  21395386 gacatggacaccgacacgccaacaccgctaataatttgagaaaat-acataatttagtgtaatta 21395323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 33001374 - 33001302
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||| |||||| ||  ||||| || |||||||||||||||| |||| ||||||||||| | ||||||||||    
T  33001374 ggacacaacacggtcaatgacacgccgacactgctaataatttgaaaaaatcacataattaaatgtaattata 33001302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 31579310 - 31579239
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    |||||||||| |||||| | ||| ||||||| | ||||||||| | || ||||||||||| |||||||||||    
T  31579310 ggacacgacatggacactgccacaccaacaccgttaataatttgagaaaatcacataattcagtgtaattat 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 243
Target Start/End: Complemental strand, 35123660 - 35123625
Alignment:
Q  208 aagcacggatacggatactggacacgacacggacac 243  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35123660 aagcacggacacggatactggacacgacacggacac 35123625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 295
Target Start/End: Original strand, 6389695 - 6389785
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaat 295  Q
    |||||||||||| || || || |||||||||||||||||  |||| || |||| | ||||||||| | || || | |||||||||||||||    
T  6389695 atgaagcacggacacagacaccggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaat 6389785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 6898271 - 6898221
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| |||| || |||||||||||| || |||||||||||||||||||    
T  6898271 cgtgtccaacaccgaaacacgcctaatccgatgagtgttcgtgcttcatag 6898221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 7996485 - 7996391
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||| ||||| || || | ||| |||| |||||| ||||  || |||||||||||||||| | || |||| |||||| ||||||||||||    
T  7996485 atgaagcacagatacagacacagtacatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 7996391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 8022316 - 8022410
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||| ||||| || || | ||| |||| |||||| ||||  || |||||||||||||||| | || |||| |||||| ||||||||||||    
T  8022316 atgaagcacagatacagacacagtacatgacaaggacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattata 8022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 10889053 - 10888987
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||    |||| ||||||||||| | || ||||||||||||||||| ||||||    
T  10889053 gacacggacaccgacacatagacaccgctaataatttgataaaatcacataatttagtgtgattata 10888987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 16833282 - 16833352
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| ||||| || ||||  |||||||||| |||| |||||||| || ||||||||||    
T  16833282 ggacacgacacagacactgacacgccgacacaactaataatttgaaaaaatcacatacttcagtgtaatta 16833352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 17327640 - 17327590
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||| ||||| | ||||||||||||| ||||||||| ||||||||||||    
T  17327640 cgtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 17341746 - 17341676
Alignment:
Q  230 cacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||| ||| ||||| || |||| | ||||||||| | || ||||||||||| |||||||||||||    
T  17341746 cacgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattataa 17341676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 32298668 - 32298603
Alignment:
Q  251 ccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgaca 316  Q
    ||||||| ||||||||||| | |  ||||||||||||||||||||||||  |||| ||||| ||||    
T  32298668 ccaacaccgctaataatttaagatcatcacataatttagtgtaattatatgtgttggtgtcagaca 32298603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 32511639 - 32511606
Alignment:
Q  323 cacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||||||||||| ||||||||||||    
T  32511639 cacgcctaatcggaggagtgtccgtgcttcatag 32511606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 32511724 - 32511667
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    |||| ||||||||||| | || ||||||||||| ||||||||||||| |||| |||||    
T  32511724 acaccgctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtc 32511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 3209347 - 3209426
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaata-tcacataatttagtgtaatta 297  Q
    ||||| || |||||||||||| |||| ||||| || |||| ||||||||||| |||| | |||||||||||||||| ||||    
T  3209347 acggacaccggacacgacacg-acacagacacgccgacacagctaataatttgaaaaaaatcacataatttagtgttatta 3209426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 3209483 - 3209519
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  3209483 gacacgcctaatccgaggagtgtttgtgcttcataga 3209519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 4878014 - 4878061
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  4878014 tgtccgacacag-gacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 7151410 - 7151458
Alignment:
Q  251 ccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||  |||||||||| |||| ||||||||||| ||||||||||||    
T  7151410 ccaacacctctaataatttgaaaaaatcacataattaagtgtaattata 7151458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 7625185 - 7625237
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| |  |||||| |||||  |||||||||||||||||||||||    
T  7625185 cgtgtccgacaccggaacacgcttaatccaaggagtgttcgtgcttcatagat 7625237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 7977818 - 7977770
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||  || ||||||||||||  |||||||||||||||||||||    
T  7977818 tgtccgacaacgaaacacgcctaatctaaggagtgttcgtgcttcatag 7977770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 9107348 - 9107296
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatg 359  Q
    ||||||||||| | ||||| ||||||| ||||||||  |||||||||||||||    
T  9107348 gtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatagatg 9107296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 9911517 - 9911481
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  9911517 gacacgcctaatccgaggagtgttcatgcttcataga 9911481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 19044442 - 19044510
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||| |||||| ||||| || ||||  |||||||||| | |||||||||||||| ||||| ||||||    
T  19044442 acgacatggacactgacacgccgacacgactaataatttgagaatatcacataattcagtgttattata 19044510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 299
Target Start/End: Original strand, 26562671 - 26562735
Alignment:
Q  235 cacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| |||| ||||| || |||||||||| ||||| | || ||||||||||| ||||||||||||    
T  26562671 cacgaacacggacacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattata 26562735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 28152079 - 28152142
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||  ||||||||||| |||| ||||||||||| ||||||||||    
T  28152079 gacacggacactgacacgccgacaaagctaataatttgaaaa-atcacataattcagtgtaatta 28152142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 32248974 - 32248938
Alignment:
Q  263 ataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||| |||||||||||||| |||||||||    
T  32248974 ataattttaaaaaatcacataatttagggtaattata 32248938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 34595203 - 34595255
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||| ||||| | ||||| ||||||| ||||||||| ||||||||||||||    
T  34595203 cgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagat 34595255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 51)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 20539781 - 20539632
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||| |||||||||||||||||||| |||||  | |||| ||||||||||| |||| |||| ||||||||||||||||| || |||    
T  20539781 atgaagcacggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgt 20539682  T
Q  305 tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
      |||| ||   | ||||||||||| ||| ||||||||| ||||||||||||    
T  20539681 cggtgt-cgtggc-gagacacgcctgatccgaggagtgtccgtgcttcatag 20539632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 205 - 298
Target Start/End: Complemental strand, 21782925 - 21782832
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    |||||||||| |||| || ||||||||||||||  |||| ||||| || |||||||||||||||| | || ||||||||||| |||||||||||    
T  21782925 atgaagcacgaatacagacactggacacgacacaaacactgacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 21616737 - 21616822
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccg 313  Q
    |||||||||||||||| ||||| || |||| ||||||||||| | || ||||||||||| ||||||||||||  ||| ||||||||    
T  21616737 gacacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgtacgtgtccg 21616822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 26769591 - 26769644
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatg 359  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  26769591 cgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagatg 26769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 23717979 - 23718072
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||| || || ||||| ||||||||||| ||||| || |||| ||||||||||| | ||  |||||||||| ||||||||||||    
T  23717979 atgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattata 23718072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 24105651 - 24105744
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||| || || ||||| ||||||||||| ||||| || |||| ||||||||||| | ||  |||||||||| ||||||||||||    
T  24105651 atgaagcacggatacagacac-ggacatgacacggacactgacacaccgacaccgctaataatttgagaaagtcacataattcagtgtaattata 24105744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 19536505 - 19536412
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattt-taaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||||||| || ||||||||||||||||  ||||| || ||||  ||||||||||  |||| ||||||||||| ||||||||||    
T  19536505 atgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaatta 19536412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 42832355 - 42832234
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaat 332  Q
    ||||||||| | ||||| || |||| ||||||||||| | || || ||||| || ||||||||||||| |||  ||||||||| | | ||||||||||||    
T  42832355 gacacggactcagacacaccgacaccgctaataatttgagaaaattacatatttcagtgtaattataagtgtcggtgtccgactccgggacacgcctaat 42832256  T
Q  333 cggaggagtgttcgtgcttcat 354  Q
    |  |||||||| | ||||||||    
T  42832255 ccaaggagtgtccttgcttcat 42832234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 31018568 - 31018636
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||| |||||| ||||| ||||||| ||||||||||| | || ||||||| ||||||||||||||||    
T  31018568 acgacatggacactgacacgccaacaccgctaataatttcagaaaatcacatgatttagtgtaattata 31018636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 21374807 - 21374714
Alignment:
Q  205 atgaagcacggatacggatactggacac--gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||||||  |||||||||||  |||| || |||| ||||||||||| |||| || |||||||| ||||||||||    
T  21374807 atgaagcacggatacggacac-ggacaccggacacggacactaacacgccgacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 30404943 - 30404865
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||| ||||| ||||||||||| ||||| || |||| | ||||||||| |||| ||||||||||| ||||||||||    
T  30404943 acggatac-ggacatgacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaatta 30404865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 34785066 - 34784995
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||| ||||| || ||||  |||||  ||||| || ||||||||||||||||||||||||    
T  34785066 gacacgacacggacactgacacaccgacacaactaatttttttagaaaatcacataatttagtgtaattata 34784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 6940233 - 6940299
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||| ||||| || |||| ||||||||||||||||  | |||||||| ||||||||||    
T  6940233 acgacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaatta 6940299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 18421941 - 18422007
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||| ||||| || ||||   ||||||||| |||||||||||||||| ||||||||||    
T  18421941 acgacacggacactgacacgccgacacaattaataatttaaaaatatcacataattcagtgtaatta 18422007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 35056948 - 35056998
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| || |||||||||||| ||||||||| ||||||||||||    
T  35056948 cgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 37419823 - 37419873
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  37419823 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 274
Target Start/End: Original strand, 21624218 - 21624287
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaa 274  Q
    ||||||| |||||||||| || | ||||||||| ||||| ||||| || |||| ||||||||||||||||    
T  21624218 atgaagcccggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaa 21624287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 34993971 - 34993922
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  34993971 gtgtccgacactgggacacgcctaattcaaggagtgttcgtgcttcatag 34993922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 40361854 - 40361749
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||| |||||||| | ||||||||| || || ||||||   |||||  ||||||||| |||| || |||||||||||||||||||||  |||| |||||    
T  40361854 acggacacggataccgaacacgacacagatacggacactatgacactattaataatttgaaaaaattacataatttagtgtaattatatctgttggtgtc 40361755  T
Q  312 cgacac 317  Q
     |||||    
T  40361754 agacac 40361749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 10535720 - 10535684
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10535720 gacacgcctaatccgaggagtgttcgtgcttcataga 10535684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 30335392 - 30335468
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    ||||||||||||||||   ||| || ||||  |||||||||| |||| || ||||||||||||||||||| ||||||    
T  30335392 gacacgacacggacactagcacgccgacacaactaataatttgaaaaaatgacataatttagtgtaattacaaatgt 30335468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 44635568 - 44635612
Alignment:
Q  312 cgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||| ||||||||||||||| ||||||||| ||||||||||||    
T  44635568 cgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 299
Target Start/End: Complemental strand, 2665940 - 2665901
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  2665940 ctaataattttagaaaatcacataatttagtgtaattata 2665901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 24894370 - 24894433
Alignment:
Q  234 acacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||| ||||| || |||| ||||||||||| |||| ||||||||||| |||| |||||    
T  24894370 acacggacactgacacgccgacacagctaataatttaaaaaaatcacataattcagtgcaatta 24894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Complemental strand, 29367332 - 29367281
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    ||||||||||| |||||| |||||||| ||||| |||| |||||||||||||    
T  29367332 gtgtccgacaccgagacatgcctaatccgaggaatgtttgtgcttcatagat 29367281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 354
Target Start/End: Complemental strand, 2438707 - 2438661
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||    
T  2438707 tgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 20242833 - 20242740
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||  || | |||||||| |||||| ||||| || ||||  |||||  ||||| || ||||||||||| ||||||||||||    
T  20242833 atgaagcacggatacgggcacag-acacgacatggacactgacacgccgacacaactaatttttttagaaaatcacataattcagtgtaattata 20242740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27084338 - 27084388
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| |||| |||||||||||||||||||||||||   ||||||||||    
T  27084338 cgtgtccaacaccgagacacgcctaatcggaggagtgtctctgcttcatag 27084388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 28412325 - 28412395
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    ||||||||||||||||  ||||  |||||| | ||||||||| | || ||||||||||| |||||||||||    
T  28412325 gacacgacacggacactaacacgtcaacaccgttaataatttgataaaatcacataattcagtgtaattat 28412395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 30527674 - 30527608
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| ||||| || |||||| ||||||||| | || |||| |||||||||||||||||||    
T  30527674 gacactgacactgacacacccacactgttaataatttgagaaaatcatataatttagtgtaattata 30527608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 33519738 - 33519800
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataat 267  Q
    |||||||||||||||||| || ||||||||| |||| || ||||| || |||| |||||||||    
T  33519738 atgaagcacggatacggacaccggacacgacgcggatactgacacaccgacaccgctaataat 33519800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 36409711 - 36409641
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    ||||||||||||| ||  |||  || |||| ||| ||||||| |||| |||||||||||||||||||||||    
T  36409711 gacacgacacggatactcacatgccgacaccgctgataatttgaaaaaatcacataatttagtgtaattat 36409641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 38117149 - 38117099
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| |||| |||| ||||||||||||    
T  38117149 cgtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 42511372 - 42511322
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | |||||| |||||| ||||||||| ||||||||||||    
T  42511372 cgtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 11223841 - 11223792
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||| ||||| | ||||||||||||| ||||||||| |||||||||||||    
T  11223841 tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcataga 11223792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 12224292 - 12224337
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgctt 351  Q
    |||||||||||||| |||||||||||||  ||||||||| ||||||    
T  12224292 cgtgtccgacactgggacacgcctaatccaaggagtgtttgtgctt 12224337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 14996330 - 14996238
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaata-tcacataatttagtgtaatta 297  Q
    ||||||||||||||||||  | | ||| ||||||||||| ||||  || |||| ||||||||||| |||| | ||| |||||||||||||||||    
T  14996330 atgaagcacggatacggacgcag-acatgacacggacactgacaagccgacacagctaataatttgaaaaaaatcatataatttagtgtaatta 14996238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 15657838 - 15657915
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||  |||| || || |  ||||||||||  ||| ||||||||||| |||||||||| ||||||    
T  15657838 ggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgt 15657915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 15909619 - 15909570
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| | ||||||||||||  || |||||||||||||||||||    
T  15909619 gtgtccgacacagggacacgcctaattcgaagagtgttcgtgcttcatag 15909570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 16069333 - 16069268
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    ||||||||||| ||||| || |||| | ||||||||| |||| |||| |||||| |||||||||||    
T  16069333 gacacggacactgacacgccgacaccgttaataatttaaaaaaatcatataattcagtgtaattat 16069268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 365
Target Start/End: Complemental strand, 18841001 - 18840944
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatgcaacct 365  Q
    |||||||||| | ||||| ||||||| ||||||||| |||||||||||| ||| ||||    
T  18841001 tgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagttgccacct 18840944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 28596538 - 28596587
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    |||||||||||||  ||||| ||||||| ||||||||| |||||||||||    
T  28596538 cgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttcata 28596587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 28677910 - 28677955
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  28677910 acaccgctaataatttgaaaaaatcacataattcagtgtaattata 28677955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 30717610 - 30717545
Alignment:
Q  232 cgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||| ||||  || |||  ||||||||||| |||| ||||||||||| ||||||||||    
T  30717610 cgacacggacactgacaaaccgacaaagctaataatttgaaaaaatcacataattcagtgtaatta 30717545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 32749803 - 32749750
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatgc 360  Q
    ||||||||||||| ||||||||| |||  |||||||| || |||||||||||||    
T  32749803 gtgtccgacactgggacacgccttatctaaggagtgtccgcgcttcatagatgc 32749750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 6180838 - 6180790
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| |||||||||| ||||||| ||||||| | ||||||||||||    
T  6180838 tgtccgatactgagacacacctaatctgaggagtttccgtgcttcatag 6180790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 12941019 - 12940943
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||| |||||    ||||  |||||||||| |||| |||| |||||| |||||||||| ||||||    
T  12941019 gacacgacacggacactgacacgttgacacaactaataatttgaaaaaatcatataattcagtgtaattacaaatgt 12940943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 24975304 - 24975252
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatg 359  Q
    ||||||||||||| ||||   |||||| ||||||||| |||||||||||||||    
T  24975304 gtgtccgacactgggacaaatctaatctgaggagtgtccgtgcttcatagatg 24975252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 299
Target Start/End: Complemental strand, 28602393 - 28602361
Alignment:
Q  267 ttttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||||||| ||||||||||    
T  28602393 ttttaaaatatcacataatttaatgtaattata 28602361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 31808063 - 31808123
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| || |||| ||||||||||| | || ||||||||||| ||||||||||||    
T  31808063 gacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattata 31808123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 37558957 - 37559021
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||| |||||||||||  ||| ||||||||||| | ||||||||    
T  37558957 gacacggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaatta 37559021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 22013366 - 22013461
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||||||||||| || ||||||||||||||||| ||||| || |||| |||||||||||  ||| || ||||||||||||||||||||||    
T  22013366 atgaagcacggatacggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaattacataatttagtgtaattataa 22013461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 19820501 - 19820437
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattt 269  Q
    |||||||||||||||||| || ||||||||||||||||| |||||||| |||| |||||||||||    
T  19820501 atgaagcacggatacggacaccggacacgacacggacactgacactccgacaccgctaataattt 19820437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 21522724 - 21522794
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||| || |||| |||||||||||||||| || |||||||| ||||||||||    
T  21522724 ggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21522794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 21533290 - 21533360
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||| || |||| |||||||||||||||| || |||||||| ||||||||||    
T  21533290 ggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaatta 21533360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 356
Target Start/End: Original strand, 2436880 - 2437030
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||| || ||||||||||| |||||       || |||| |||||||||||  ||| |||||||||||   ||| ||||||  |||    
T  2436880 atgaagcacggatacggacaccggacacgacactgacacg------ccgacaccgctaataatttgcaaaaatcacataattcgttgtgattatatgtgt 2436973  T
Q  305 -----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
         |||||||||||||  |||||||||||||| ||||||||||||||||||||||    
T  2436974 cggtgtcgtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 358
Target Start/End: Original strand, 14674249 - 14674370
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgaca--ctgagacacgccta 330  Q
    ||||||||||| ||||| || |||| ||||||||||| |||| |||||||||||||||||||||| ||      ||||| ||||  | ||||||| ||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaa------gtgtcggacaggccgagacacaccta 14674342  T
Q  331 atcggaggagtgttcgtgcttcatagat 358  Q
    ||| |||||||||  |||||||||||||    
T  14674343 atccgaggagtgtctgtgcttcatagat 14674370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 356
Target Start/End: Complemental strand, 6326391 - 6326253
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||||| ||||||||||||||||| ||||| || |||  |||| |||||| | || || |||||||| |||||||||| || |||  | ||| |||||    
T  6326391 acggataccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaattacaagtgtcagcgtcggacac 6326292  T
Q  318 tgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
     |  |||||||||||  ||| ||||| ||||||||||||    
T  6326291 cggaacacgcctaattcgagaagtgtccgtgcttcatag 6326253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 21191141 - 21191071
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||  || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  21191141 ggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 25888389 - 25888305
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataatttt--aaaatatcacataatttagtgtaattataa 300  Q
    ||||| || |||||||||||||| || ||||| |||||||| |||||||||||  |||| |||| |||||| |||||||||||||    
T  25888389 acggacacaggacacgacacggatacagacacaccaacactactaataattttaaaaaaaatcatataattcagtgtaattataa 25888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 6247574 - 6247666
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||||| |||| || |||||||| ||| |||| ||||| || ||||  |||||||||| |||| ||||||||||| ||||||||||    
T  6247574 atgaaacacggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaatta 6247666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 21576847 - 21576760
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||| || |||||||||||     |||| || || ||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  21576847 atgaagcacggatacagacactggacacga-----acactgatacgccaacacagctaataatttgaaaaaatcacataattcagtgtaatta 21576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 21576735 - 21576685
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  21576735 cgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 24906386 - 24906316
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||| |||| ||||| ||||||| | ||||||||| |||| || |||||||| ||||||||||    
T  24906386 ggacacgacacgaacactgacacgccaacacagataataatttgaaaaaatgacataattcagtgtaatta 24906316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 39268587 - 39268541
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttca 353  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  39268587 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 39698625 - 39698671
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  39698625 tccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 308 - 357
Target Start/End: Complemental strand, 19820376 - 19820327
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||||| | ||||||||||||| ||||||||| |||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcataga 19820327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 19552626 - 19552562
Alignment:
Q  229 acacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgta 293  Q
    ||||||||||||||| ||||| || |||| | ||||||||| |||| ||||||||||| ||||||    
T  19552626 acacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaagtgta 19552562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 37328951 - 37328859
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||| ||||| || | ||||||||||||||| || || || |||| || ||||||||  ||| |||||| |||| ||||||||||    
T  37328951 atgaagcacggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaatta 37328859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 40000639 - 40000555
Alignment:
Q  208 aagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgt 292  Q
    ||||||||||||||||| |||  ||||||||||||| ||||   | |||||  ||||||||| |||| ||||||||||| |||||    
T  40000639 aagcacggatacggatattgggtacgacacggacactgacatgtcgacactcttaataatttgaaaaaatcacataattcagtgt 40000555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 22423895 - 22423761
Alignment:
Q  229 acacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt-----tcgtgtccgacactgagac 323  Q
    |||||||||||| || ||||| |  ||||| |||||||||| | || ||||||||||| | | |||||||| ||||     ||||||| |   ||| |||    
T  22423895 acacgacacggatactgacaccctgacactactaataatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtctg-gac 22423797  T
Q  324 acgcctaatcggaggagtgttcgtgcttcatagatg 359  Q
    |||||||||| ||||||||| |||||||||||||||    
T  22423796 acgcctaatccgaggagtgtccgtgcttcatagatg 22423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 31084397 - 31084448
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||||||||| |||| |||||||| ||||||||| |||| ||||||||    
T  31084397 cgtgtccgacactgggacatgcctaatccgaggagtgtccgtggttcataga 31084448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 13287499 - 13287417
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaa 294  Q
    ||||| ||||| || |||||||||||||||||  ||||  | |||| | ||||||||| |||| ||||||||||| |||||||    
T  13287499 acggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaa 13287417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 14422878 - 14422949
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||| |||||| ||||| || | || |||||||||||  ||| ||||||||||| |||||||||||||    
T  14422878 ggacacgacaaggacactgacacaccgatacagctaataattt--aaaaatcacataattcagtgtaattataa 14422949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 14873591 - 14873641
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| |||| | ||||||||||||| ||||||||| ||||||||||||    
T  14873591 cgtgtccaacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 16203874 - 16203808
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||  |||  || |||||||||||||||| | || ||| ||||||||||||||||||||    
T  16203874 gacacggacactaacatgccgacactgctaataatttgagaaaatctcataatttagtgtaattata 16203808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 27144443 - 27144509
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| ||||| || |||| ||||||||||| |  | ||||||||||||||||||||||||    
T  27144443 gacacagacactgacacgccgacaccgctaataatttgaggaaatcacataatttagtgtaattata 27144509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 33178032 - 33178069
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  33178032 ctaataatttaaaaaaatcacataatttagtgtaatta 33178069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 36642847 - 36642774
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    ||||||||||||||||| ||||| || |||| | ||||||||| ||||  | ||||| |||||||||| |||||    
T  36642847 ggacacgacacggacactgacacgccgacacagttaataatttgaaaaagtgacatattttagtgtaaatataa 36642774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 39698524 - 39698585
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||| ||||| |  |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  39698524 acggacactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaatta 39698585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 41633709 - 41633786
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||| |||| || || |||||||| |||| ||||||||||| ||||  | |||||||| |||||||||| ||||||    
T  41633709 ggacaccacacagatactgacactccgacacagctaataatttgaaaaatttacataattcagtgtaattacaaatgt 41633786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 41995430 - 41995515
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| |||||| ||||||| ||||| ||||| || ||||  |||||||||  |||| ||||||||||| | ||||||||    
T  41995430 acggacacggacactggatacgacacagacactgacacgccgacacaactaataattcgaaaaaatcacataattcaatgtaatta 41995515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 12927625 - 12927705
Alignment:
Q  224 actggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||| || || ||||| ||||| || |||  ||||||||||| | || |||| ||||||||||||||||||| ||||    
T  12927625 actggacatgatacagacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatatatgt 12927705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 17123119 - 17123166
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  17123119 tgtccgacacgg-gacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 21191046 - 21190998
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||| | | ||||||||||||| ||||||||| ||||||||||    
T  21191046 cgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 43001780 - 43001844
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||   | |||||||||||||||| |||| || |||||||| ||||||||||    
T  43001780 gacacggacactgacatgtcgacactgctaataatttgaaaaaattacataattcagtgtaatta 43001844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 135419 - 135263
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||| ||||||||| || | | ||||||| |||||| |||| || |||||||||||||||| | || |||||||||||  |||||||||||  |||    
T  135419 atgaagcatggatacggacaccgaatacgacacagacaccaacacaccgacactgctaataatttgagaaaatcacataattctgtgtaattatatgtgt 135320  T
Q  305 -----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
         |||||||||||||   ||||||||||||| |||| |||||||||||||||||    
T  135319 cggtgtcgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatag 135263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 53)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 358
Target Start/End: Original strand, 11610496 - 11610630
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt----tcgtgtccgacactgagac 323  Q
    ||||| |||| || || ||||| ||||||| ||||||||||| |||| ||||||||||| |||||| ||| || |||    ||||||||||||  | |||    
T  11610496 gacacaacacagatactgacacgccaacaccgctaataatttaaaaaaatcacataattcagtgtagttacaagtgtcaagtcgtgtccgacatcgggac 11610595  T
Q  324 acgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||| ||||||||| ||||||||||||||    
T  11610596 acgcctaatctgaggagtgtccgtgcttcatagat 11610630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 317
Target Start/End: Original strand, 8383213 - 8383321
Alignment:
Q  209 agcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgt 308  Q
    |||||||| ||||| |||||||||||||||||||  ||||| || |||| ||||||||||| | || |||| |||||| ||||||||||||| |||  ||    
T  8383213 agcacggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggt 8383312  T
Q  309 gtccgacac 317  Q
    ||| |||||    
T  8383313 gtcggacac 8383321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 352
Target Start/End: Complemental strand, 10335380 - 10335249
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    ||||| || ||||||||||||||||| ||||| || ||||  |||||||||| ||||  ||||||| |||||||||| || || |||  ||||| | |||    
T  10335380 acggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaaatacaagtgtcggtgtcgggcac 10335281  T
Q  318 tgagacacgcctaatcggaggagtgttcgtgcttc 352  Q
       |||||||||||| |||||||||||||||||||    
T  10335280 ---gacacgcctaattggaggagtgttcgtgcttc 10335249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 55401027 - 55401119
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||||||| || ||| ||||||||||||| || || || ||||  |||||||||| |||| ||||||||||||||||||||||    
T  55401027 atgaagcacagatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaatta 55401119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 14840382 - 14840303
Alignment:
Q  221 gatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||||||||||||| |||||||| |||||||   ||||||||| | || ||||||||||| |||||||||||||    
T  14840382 gatactggacacgacacggataccgacacgccaacaccattaataatttcagaaaatcacataattcagtgtaattataa 14840303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 14216845 - 14216950
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    ||||||||||||| |||| || | ||||||||||||||| |||||  | ||||  |||||||||||||||||||| |||||| |||||||||| || |||    
T  14216845 atgaagcacggatgcggacacag-acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgt 14216943  T
Q  305 tcgtgtc 311  Q
     ||||||    
T  14216944 ccgtgtc 14216950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 311
Target Start/End: Original strand, 14222974 - 14223079
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    ||||||||||||| |||| || | ||||||||||||||| |||||  | ||||  |||||||||||||||||||| |||||| |||||||||| || |||    
T  14222974 atgaagcacggatgcggacacag-acacgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgt 14223072  T
Q  305 tcgtgtc 311  Q
     ||||||    
T  14223073 ccgtgtc 14223079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 317
Target Start/End: Original strand, 8842277 - 8842393
Alignment:
Q  200 accccatgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| |||||||||||||||||| || ||| |||||||||| |  ||||  || |||| |||||||||||| ||| |||||||||||| |||||||||||    
T  8842277 accctatgaagcacggatacggacaccggatacgacacggaaattgacatgccgacaccgctaataattttgaaa-atcacataatttggtgtaattata 8842375  T
Q  300 aatgttcgtgtccgacac 317  Q
     ||||  ||||| |||||    
T  8842376 tatgtcggtgtcagacac 8842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 8587128 - 8587036
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||||||| || ||||| ||||||||||| ||||| || ||||  ||| |||||| |||| ||||||||||| ||||||||||    
T  8587128 atgaagcacagatacggacaccggacatgacacggacactgacacgccgacacatctagtaatttgaaaaaatcacataattaagtgtaatta 8587036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 32429487 - 32429331
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||| ||||||| || |||||| ||||| |||  |||||||| |||  ||||||||||| | || ||||||||||| |||| |||||||||| |    
T  32429487 atgaagcacgtatacggacaccggacacaacacgaacattgacactccgacaacgctaataatttaagaaaatcacataattcagtgcaattataaatat 32429388  T
Q  305 -----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
         || ||||  | ||  ||||||| |||||||||||||||||||| ||||||||    
T  32429387 cggtgtcatgtcgaataccaagacacgtctaatcggaggagtgttcgtacttcatag 32429331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 25074864 - 25074914
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  25074864 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 40052381 - 40052431
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||||||||||||||||||||||    
T  40052381 cgtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 55401144 - 55401194
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| ||||||||||||||| ||||||||| ||||||||||||    
T  55401144 cgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 4201394 - 4201459
Alignment:
Q  251 ccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgaca 316  Q
    ||||||| | ||||||||| |||| ||||||||||| |||||||||||| ||||| ||||||||||    
T  4201394 ccaacaccgttaataatttgaaaaaatcacataattaagtgtaattatatatgttggtgtccgaca 4201459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 10318113 - 10317998
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaat 332  Q
    ||||||||||| ||||| || |||| ||||||||||| ||||  ||||||  |||||||||| ||||| |||  ||||| | |||   ||||||||||||    
T  10318113 gacacggacactgacacgccgacacagctaataatttgaaaaagtcacatt-tttagtgtaaatataagtgtcggtgtcgggcac---gacacgcctaat 10318018  T
Q  333 cggaggagtgttcgtgcttc 352  Q
     |||||||||||||||||||    
T  10318017 tggaggagtgttcgtgcttc 10317998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 298
Target Start/End: Original strand, 25064861 - 25064954
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    ||||| ||||| ||| || || ||||||||||| ||||  ||||| || |||| |||||| |||| |||| |||||||||||||||||||||||    
T  25064861 atgaaacacgggtacagacaccggacacgacacagacattgacacgccgacaccgctaatgatttgaaaaaatcacataatttagtgtaattat 25064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 14747513 - 14747606
Alignment:
Q  205 atgaagcacggatacggatactggacac--gacacggacaccgacactccaacactgctaataattttaaaata-tcacataatttagtgtaatta 297  Q
    ||||||||||||||||||||| ||||||  |||||| |||| ||||| || |||| ||||||||||| |||| | |||||||||||||||||||||    
T  14747513 atgaagcacggatacggatac-ggacaccggacacg-acactgacacgccgacacagctaataatttgaaaaaaatcacataatttagtgtaatta 14747606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 10268567 - 10268468
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgccta 330  Q
    |||||| |||||| ||||| || |||| | ||||||||| |||| |||||||||||||||||||||| || |||  ||||| ||||| |  |||||||||    
T  10268567 acgacatggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaattacaagtgtcagtgtcagacaccggaacacgccta 10268468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 28917966 - 28918045
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || |||||||||||||| || ||||| || |||  ||||||||||| |||| ||||||||||| ||||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaatta 28918045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 21211363 - 21211413
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||| ||||||| |||||||||| |||||||||||    
T  21211363 cgtgtccgacactgggacactcctaatccgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 24205135 - 24205034
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    ||||| || ||||||||||||||||| ||||| || |||| | ||||||||| | || || |||||||  ||||||||||||| || ||||||| |||||    
T  24205135 acggacaccggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattataagtg-tcgtgtcggacac 24205037  T
Q  318 tga 320  Q
    |||    
T  24205036 tga 24205034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 311
Target Start/End: Complemental strand, 25948966 - 25948888
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||||||||| ||||  || | || ||||||||||| |||| ||||||||||| ||||||||||||| |||| |||||    
T  25948966 gacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtc 25948888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 41961629 - 41961579
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||||||||||| ||| ||||| ||||||||||||    
T  41961629 cgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 11313858 - 11313813
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||| | || ||||||||||||||||||||||||    
T  11313858 acactgctaataatttgagaaaatcacataatttagtgtaattata 11313813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 354
Target Start/End: Original strand, 25775575 - 25775624
Alignment:
Q  305 tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||||||   ||||||||||||| ||||||||||||||||||||    
T  25775575 tcgtgtccgacaccaggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 8842410 - 8842450
Alignment:
Q  318 tgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  8842410 tgagacacgcctaatccgaggagtgtccgtgcttcatagat 8842450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 27277896 - 27277852
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    |||||||||||||||| | || |||||||||||||||||||||||    
T  27277896 acactgctaataatttgagaaaatcacataatttagtgtaattat 27277852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 1509540 - 1509583
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||    
T  1509540 acacagctaataatttgaaaaaatcacataatttagtgtaatta 1509583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 3164022 - 3163971
Alignment:
Q  305 tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||||  ||||||||| | ||||||||||    
T  3164022 tcgtgtccgacaccgagacacgcctaattcgaggagtgtccatgcttcatag 3163971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 8789536 - 8789489
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    |||| ||||| ||||||||||||||| ||||||||| |||||||||||    
T  8789536 tgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 15796388 - 15796309
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || ||||||||||||||||  ||||| || |||| | ||||||||| |||| |||| |||||| ||||||||||    
T  15796388 acggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaatta 15796309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 299
Target Start/End: Complemental strand, 49505230 - 49505167
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||| |  | || ||||||||||| | || ||||||||||||||||||||||||    
T  49505230 acggacaccgacacgcagagaccgctaataatttgagaaaatcacataatttagtgtaattata 49505167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 3610607 - 3610677
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| ||||| ||||||| | ||||||||| |||| || |||||| | ||||||||||    
T  3610607 ggacacgacacagacactgacacgccaacacagttaataatttaaaaaaataacataactcagtgtaatta 3610677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 8101942 - 8101892
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||| |||||||  ||||| |||||| ||||||||||||||||||||||    
T  8101942 cgtgtcggacactggtacacgtctaatctgaggagtgttcgtgcttcatag 8101892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 14979147 - 14979224
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatt 296  Q
    |||||||| |||||||||| |||||  | ||| || |||| ||||||||||| |||| ||||||||||| |||||||||    
T  14979147 acggatac-ggacacgacaaggacaatggcacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatt 14979224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 20503536 - 20503586
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||| ||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  20503536 tgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagat 20503586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 26492290 - 26492220
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||| || |||  ||||||||||| |||| |||| | |||| ||||||||||    
T  26492290 ggacacgacacggacactgacacgccgacagagctaataatttgaaaaaatcatacaattcagtgtaatta 26492220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27505320 - 27505370
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | |||| |||||||| ||||||||| ||||||||||||    
T  27505320 cgtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 297
Target Start/End: Complemental strand, 4987363 - 4987306
Alignment:
Q  240 acaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||| ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  4987363 acactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 4987306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 4991067 - 4990982
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || | |||||||||||| || |||||||| |||| ||||||| ||| | || || |||||||| ||||||||||    
T  4991067 acggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaatta 4990982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 7928451 - 7928496
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| ||||||||||| |||| ||||||||||| ||||||||||||    
T  7928451 acaccgctaataatttgaaaaaatcacataattcagtgtaattata 7928496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 10455755 - 10455836
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| |||||||||||||| | ||  ||||| ||||||||||||||||| | | || |||| |||| | ||||||||||||    
T  10455755 acggacactggacacgacacaggcattgacacgccaacactgctaataatatgagaaaatcatataactaagtgtaattata 10455836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 14209120 - 14209157
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  14209120 ctaataattttaaaaaatcacataattcagtgtaatta 14209157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 1509637 - 1509681
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgctt 351  Q
    ||||||||||| |  |||||||||||||||||||||| |||||||    
T  1509637 gtgtccgacaccggtacacgcctaatcggaggagtgtccgtgctt 1509681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 3164119 - 3164043
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaa 294  Q
    ||||| || ||||||||||||||||  | |||  | |||| ||||||||||| |||| ||||||||||| |||||||    
T  3164119 acggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaa 3164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 4987270 - 4987222
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||||| | ||||||||||||| ||||||||| ||| ||||||    
T  4987270 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 10954911 - 10954994
Alignment:
Q  207 gaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaat 295  Q
    |||||||||||||||| || ||||||||     |||| ||||| || ||||  |||||||||| |||| ||||||||||| ||||||||    
T  10954911 gaagcacggatacggacaccggacacga-----acactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaat 10954994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 304
Target Start/End: Original strand, 18426932 - 18427000
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||| ||||| || ||||  |||||||||| |||| |||||||||||  ||||||||||| ||||    
T  18426932 acggacacggacacgccgacaccactaataatttcaaaaaatcacataattcggtgtaattatatatgt 18427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 28918072 - 28918120
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcat 354  Q
    |||||||||||||| |||||||||||||  |||||||| | ||||||||    
T  28918072 cgtgtccgacactgggacacgcctaatccaaggagtgtccctgcttcat 28918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 38731224 - 38731264
Alignment:
Q  259 gctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||| ||||||||||| |||||| |||||    
T  38731224 gctaataattttaaaaaatcacataattcagtgtagttata 38731264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 40993323 - 40993275
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| | ||||||||||||| ||||||||| | ||||||||||    
T  40993323 tgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 55212971 - 55213007
Alignment:
Q  261 taataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||| |||||||||||||||| |||||    
T  55212971 taataattttaaaaaatcacataatttagtgcaatta 55213007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 20124 - 20216
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||||||| || ||||||||||||||||  ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  20124 atgaagcacagatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 20216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 2572156 - 2572071
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| ||||||||||||||||| ||||||||  | ||||  |||||||||| |||| ||||||||||||||||||||||    
T  2572156 acggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaatta 2572071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 4948659 - 4948755
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||||| |||| ||||||||||| |||||||||| || |||  ||||| ||||| |||||||||||||||| | |||||| |||||||||||||    
T  4948659 ctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacac-gagacacgcctaatcgaatgagtgtacgtgcttcataga 4948755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 8343290 - 8343360
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||||||||| || |||  ||||||||||| |||| ||||||||||||||||||||||    
T  8343290 ggacacgacactgacaccgacacaccgacatagctaataatttgaaaaaatcacataatttagtgtaatta 8343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 22197836 - 22197757
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || ||||||||||| |||||  |||| ||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  22197836 acggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaatta 22197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 24362302 - 24362215
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||| || ||| ||||||| ||||||||||| || |||| ||||||||||| | |  ||||||||||| ||||||||||||    
T  24362302 acggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaattata 24362215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 331
Target Start/End: Original strand, 14731713 - 14731791
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgt-tcgtgtccgacactgagacacgcctaa 331  Q
    |||||||||||||||| | || ||||||||||||||||||||||||  ||| |||||||||||||   |||||||||||    
T  14731713 acactgctaataatttgagaaaatcacataatttagtgtaattatatgtgtgtcgtgtccgacaccaggacacgcctaa 14731791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 20873043 - 20873113
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||| || |||  | ||||||||| |||| ||||||||||||||||||||||    
T  20873043 ggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaatta 20873113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 27213521 - 27213644
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacg 326  Q
    |||||||||||||| || ||||| || |||||||||||||||| | || ||||||||||| | ||||||||||       ||||| ||||| | ||||||    
T  27213521 ggacacgacacggatacagacacgccgacactgctaataatttcagaaaatcacataattcactgtaattata------tgtgtcggacaccgggacacg 27213614  T
Q  327 cctaatcggaggagtgttcgtgcttcatag 356  Q
     |||||| ||| ||||| ||||||||||||    
T  27213615 gctaatccgagaagtgtccgtgcttcatag 27213644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 15816205 - 15816141
Alignment:
Q  236 acggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||| ||||| || ||||  |||||||||| |||| |||||||||||||||||||||||||    
T  15816205 acggacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattataa 15816141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 39954352 - 39954292
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||| || |||| ||||||||||| | || ||||||||||||||||||||||||    
T  39954352 gacaccgacacgccgacaccgctaataatttgagaaaatcacataatttagtgtaattata 39954292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 357
Target Start/End: Original strand, 11944749 - 11944796
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||| ||||||||||||||| || ||||||||||||||||||||    
T  11944749 tccgacaccgagacacgcctaatccgatgagtgttcgtgcttcataga 11944796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 22651950 - 22652009
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatt 286  Q
    ||||||||||||||||| ||||| || |||| ||||||||||| |||| |||||||||||    
T  22651950 ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 22652009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 25192454 - 25192359
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||| ||||||| |  |||||||| |||||||| ||||| || |||| ||||||||||| ||||  | |||||||| ||| |||||||||    
T  25192454 atgaagcacgaatacggacatcggacacgatacggacactgacacgccgacacagctaataatttgaaaaagtgacataattcagtataattataa 25192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 926882 - 926800
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    ||||| || ||||||||||||||||| ||||| |||||||| |||||||||| | || ||| |||  || |||||||||||||    
T  926882 acggacaccggacacgacacggacactgacacgccaacactcctaataatttgagaaaatctcattgttcagtgtaattataa 926800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Complemental strand, 29510389 - 29510319
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| ||||| || |||| ||||||||||| |||| |||||| |||| ||| ||||||    
T  29510389 ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataatta 29510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 13437071 - 13436990
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatt 286  Q
    |||||||||||| | ||| || ||||| |||| |||||| ||||| || |||| ||||||||||| |||| |||||||||||    
T  13437071 atgaagcacggacatggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataatt 13436990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 30077461 - 30077388
Alignment:
Q  238 ggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    |||||| ||||| ||||| | ||||||||||| |||| ||||||||||| |||||||||| || ||| ||||||    
T  30077461 ggacacggacacgccaacgcagctaataatttgaaaacatcacataattcagtgtaattacaagtgtccgtgtc 30077388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 4298992 - 4298901
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||| ||| || ||||||||||| || ||  |||| || |||| | ||||||||| |||| ||||||||||||| ||||||||    
T  4298992 atgaagcacggatatggacac-ggacacgacacagatactaacacgccgacacagttaataatttgaaaaaatcacataatttaatgtaatta 4298901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 299
Target Start/End: Complemental strand, 13844669 - 13844609
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| ||||| || |||||||||||||||| | || ||||||||||| ||||||||||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattata 13844609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 18407790 - 18407838
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||  |||||||||||| |||||||||| ||||||||||||    
T  18407790 tgtccgacactaggacacgcctaattggaggagtgtccgtgcttcatag 18407838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 31556949 - 31557040
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||| ||||||||||| || ||||| |||| || ||| ||||| || |||| | ||||||||| |||| ||||||||||| ||||||||||    
T  31556949 atgaagtacggatacggacaccggacatgacatggtcactgacacgccgacacagttaataatttgaaaa-atcacataattcagtgtaatta 31557040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 34222922 - 34222993
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||| |||||||||  ||||||  ||||||||||| | || ||||||||||| ||||||||||||    
T  34222922 ggacacgacacgaacaccgacag-ccaacatcgctaataatttaataaaatcacataattaagtgtaattata 34222993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 41838228 - 41838144
Alignment:
Q  207 gaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtg 291  Q
    |||||||||||||||| |   ||||||| |||||||| |||||  | |||| ||||||||||| |||| ||||||||||| ||||    
T  41838228 gaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataatttaaaaaaatcacataattcagtg 41838144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 22204711 - 22204762
Alignment:
Q  305 tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||||||||||| ||||||  |||||||||| ||||| ||||    
T  22204711 tcgtgtccgacactgagacacgtctaatccaaggagtgttcatgctttatag 22204762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 29447525 - 29447576
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    ||||||||||| | |||| | |||||||||||||||| ||||||||||||||    
T  29447525 gtgtccgacaccgggacaggtctaatcggaggagtgtccgtgcttcatagat 29447576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 34451144 - 34451050
Alignment:
Q  204 catgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||| |  |||| ||||||  ||||  || |||||| |||  ||||||||||||    
T  34451144 catgaagcacggatacggacac-ggacacgacacgggcaccgacacactgacacagctaattttttttgaaaatcacaaaatgcagtgtaattata 34451050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 949251 - 949205
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  949251 tccgacaccgagacactcctaatctgaggaatgttcgtgcttcatag 949205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 5813661 - 5813707
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttc 352  Q
    |||||||||||| | |||||||||||| |||||||||| ||||||||    
T  5813661 cgtgtccgacaccgggacacgcctaattggaggagtgtccgtgcttc 5813707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Original strand, 8342978 - 8343016
Alignment:
Q  259 gctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  8342978 gctaataatttgaaaaaatcacataatttagtgtaatta 8343016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 299
Target Start/End: Original strand, 13203593 - 13203687
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||||||  ||||||||||  |||| || ||  |||||   |||||||||| | || || |||||||| ||||||||||||    
T  13203593 atgaagcacggatacggatacccgacacgacacaaacactgatacgtcaacaacactaataatttgagaaaattacataattcagtgtaattata 13203687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 29510283 - 29510233
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||| ||||||| ||||||||| ||||||||||||    
T  29510283 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 33405479 - 33405397
Alignment:
Q  217 tacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||| ||||||||||||| |||||| ||||| |   | ||| ||||||||| | || | ||||||||||||||||||||||    
T  33405479 tacggacactggacacgacatggacactgacacactggccctgttaataatttgagaaaaacacataatttagtgtaattata 33405397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 40332157 - 40332195
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacac 243  Q
    |||||||||||||||||| || |||||||||||||||||    
T  40332157 atgaagcacggatacggacaccggacacgacacggacac 40332195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 4673525 - 4673440
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| |  ||||||||||| ||||| ||||| || |||| | ||||||||| |||| |||| | |||| ||||||||||    
T  4673525 acggatacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaatta 4673440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 12570594 - 12570521
Alignment:
Q  226 tggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||| || |||||||||||    |||||||||||||||| | || | ||||||||| ||||||||||||    
T  12570594 tggacacgatacagacaccgacacgttgacactgctaataatttaagaaaaacacataattaagtgtaattata 12570521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 22652057 - 22652106
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| | |||||| |||||| ||||||||| ||||||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 299
Target Start/End: Complemental strand, 28385088 - 28385007
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||| ||||||||||||||| ||||  || |||| | ||||||| | || | ||| ||||||| ||||||||||||    
T  28385088 acggatactgaacacgacacggacactgacataccgacaccgttaataatatgaataaatctcataattcagtgtaattata 28385007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 30068017 - 30067968
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||| ||||||| || |||||| ||||||||||||    
T  30068017 gtgtccgacactgggacacacctaatccgatgagtgtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 126455 - 126392
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattt 269  Q
    |||||||||||||||| | || |||||||| ||||| || ||||| ||||||| |||||||||||    
T  126455 atgaagcacggatacgcacac-ggacacgatacggatactgacacgccaacaccgctaataattt 126392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 13397622 - 13397670
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| ||||||||||||||   |||||||| ||||||||||||    
T  13397622 tgtccgacaccgagacacgcctaattcaaggagtgtccgtgcttcatag 13397670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 36450833 - 36450769
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || ||||  |||||||||| |||| |||||| |||| ||||||||||    
T  36450833 gacacggacactgacacgccgacacaactaataatttgaaaaaatcacagaattcagtgtaatta 36450769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 241559 - 241639
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattat 298  Q
    ||||| || ||||||||||||||||| ||||| || |||| |||||||||||  ||| |||||||||||||||||||||||    
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattat 241639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 241674 - 241726
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| | ||||||||||||| ||| ||||| ||||||||||||||    
T  241674 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagat 241726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 24105631 - 24105722
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| || |||| ||||||||||| |||| ||  ||| ||| ||||||||||    
T  24105631 atgaagcacggatacggatac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattgcatgattcagtgtaatta 24105722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 27944993 - 27945085
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||||||||||||||||| ||||| || ||||  |||||||||| | || || |||||||| ||||||||||    
T  27944993 atgaagcacggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaatta 27945085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 24339601 - 24339686
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| || |||||||||| |||||  ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  24339601 acggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 24339686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 294
Target Start/End: Complemental strand, 43027576 - 43027487
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaa 294  Q
    ||||||||||||| |||| |||||||||||||||||||| |||||  | || | ||||||||||| |||| ||||||||||  |||||||    
T  43027576 atgaagcacggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaa 43027487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 11061157 - 11061091
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||| ||||| || |||| ||||||||||| |||| ||||||||||||||| ||||||    
T  11061157 acgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataatta 11061091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 356
Target Start/End: Original strand, 30813788 - 30813916
Alignment:
Q  229 acacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgtt-cgtgtccgacactgaga-cacg 326  Q
    |||||| || ||||| || ||||| ||| |||||||||||| | || || |||||||| |||||||||| |  |||| ||||||||||| | ||| ||||    
T  30813788 acacgagacagacactgatactccgacattgctaataatttgagaaaattacataattcagtgtaattacaggtgttgcgtgtccgaca-tcagaacacg 30813886  T
Q  327 cctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| ||||||||| ||||||||||||    
T  30813887 cctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 2034394 - 2034481
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgta 293  Q
    |||||||||||||||||||||| ||||||||||||| ||  ||||  | ||||  |||||||||| | ||||||| |||||||||||||    
T  2034394 atgaagcacggatacggatact-gacacgacacggatacttacacgtcgacaccactaataatttgagaatatcatataatttagtgta 2034481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 5409821 - 5409771
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  5409821 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 299
Target Start/End: Complemental strand, 7328798 - 7328704
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||||| || | ||||||||| ||||   ||||  | | |||||||||||||| | || || |||||||||||||||||||||    
T  7328798 atgaagcacggatacggacaccgaacacgacacagacattaacacgtcgatactgctaataatttgagaaaataacataatttagtgtaattata 7328704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 13770665 - 13770735
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||||||||| || || || |||| ||||||||||| |||| || |||||||| ||||||||||    
T  13770665 ggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaatta 13770735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 25481876 - 25481966
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||| ||| |||||  ||||| || |||| ||||||||||| |||| ||||||||||| |||||||||| || |||| ||||| |||||    
T  25481876 ggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacac 25481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 17851396 - 17851477
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| || |||||||||| ||| ||||||||  | | || ||||||||||||| || ||||||||||| ||||||||||||    
T  17851396 acggacaccggacacgacatggataccgacacatcgataccgctaataattttagaaaatcacataattcagtgtaattata 17851477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 18215265 - 18215144
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt-----tcgtgtccgacactgagacacgc 327  Q
    |||||||||||  |||| || || | ||||||||||| |||| ||||||||||  |||||| ||| || |||     ||||||||||||| | |||||||    
T  18215265 gacacggacactaacacgccgacgcagctaataatttgaaaaaatcacataatgcagtgtagttacaagtgtcggtgtcgtgtccgacaccgggacacgc 18215166  T
Q  328 ctaatcggaggagtgttcgtgc 349  Q
    |||||| ||||||||| |||||    
T  18215165 ctaatctgaggagtgtccgtgc 18215144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 19206015 - 19206096
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||  ||||||||||||||||| |||| || |||| ||||||||||| | || ||||||||||| | | ||||||||    
T  19206015 acggataccagacacgacacggacaccaacacgccgacaccgctaataatttgagaaaatcacataattcattataattata 19206096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Complemental strand, 4017882 - 4017806
Alignment:
Q  224 actggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||||||||||||||||||| || |||| | ||||||||| | || |  | ||||||||||||||| ||||    
T  4017882 actggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcataa 4017806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 11722192 - 11722124
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatt 286  Q
    |||||||| ||||||||||||||||| ||||| || |||| ||||| ||||| | || |||||||||||    
T  11722192 acggataccggacacgacacggacactgacacgccgacaccgctaacaatttgagaaaatcacataatt 11722124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 15680789 - 15680873
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||| |||||| ||||| || |||  ||||||||||  |||| ||||||||||||||||||||||||| |||  ||||| |||||    
T  15680789 gacatggacactgacacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcggacac 15680873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 299
Target Start/End: Complemental strand, 18013155 - 18013087
Alignment:
Q  231 acgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||| |||| ||  ||||| |||||||||| |||| || |||||||| ||||||||||||    
T  18013155 acgacacggacactgacattctgacactactaataatttaaaaaaattacataattcagtgtaattata 18013087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 33994164 - 33994256
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| ||| ||||||||||| |||| ||||| || || |  ||| |||||| ||||  |||||||||| |||| |||||    
T  33994164 atgaagcacggatacggacacttgacacgacacgaacactgacacgccgacgcaactactaatttgaaaaggtcacataattcagtgcaatta 33994256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 299
Target Start/End: Original strand, 5235949 - 5236032
Alignment:
Q  216 atacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||| | |||||||||||| ||||| |||||  | |||| ||||||||||| | || || | |||||||||||||||||||    
T  5235949 atacggacattggacacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaattata 5236032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 20549862 - 20549909
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    ||||||||| |||||||||||||||| ||||||||  |||||||||||    
T  20549862 tgtccgacaatgagacacgcctaatccgaggagtgcccgtgcttcata 20549909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 21864758 - 21864852
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattt--taaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||  | |  ||||||||||||||||| ||||| |  |||| |||||||||||   |||| |||| |||||||||||||||||    
T  21864758 atgaagcacggatacacacatcggacacgacacggacacggacacacggacacagctaataatttgaaaaaaaatcatataatttagtgtaatta 21864852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 356
Target Start/End: Complemental strand, 32093989 - 32093954
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32093989 gacacgcctaatccgaggagtgttcgtgcttcatag 32093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 45056974 - 45056927
Alignment:
Q  239 gacaccgacactccaacactgctaataattttaaaatatcacataatt 286  Q
    ||||| ||||||||||||||||||||||||| | || |||||||||||    
T  45056974 gacacggacactccaacactgctaataatttgagaaaatcacataatt 45056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 598277 - 598327
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||| ||||| ||||||||||||    
T  598277 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Original strand, 3721070 - 3721139
Alignment:
Q  229 acacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||| |||| | | ||| |||||||||||| | || ||||||||||||||| ||||||||    
T  3721070 acacgacacggacactgacatttcgaca-tgctaataatttgagaaaatcacataatttagtataattata 3721139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 7133262 - 7133212
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||| ||||||| |||||| || ||||||||||||    
T  7133262 cgtgtccgacactgggacacacctaatctgaggagcgtccgtgcttcatag 7133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 9778574 - 9778624
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | |||||||||||||  |||||||| ||||||||||||    
T  9778574 cgtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 11738193 - 11738151
Alignment:
Q  314 acactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||||||||| ||||||||| |||| |||||||    
T  11738193 acactgagacacgcctaatcagaggagtgtccgtgtttcatag 11738151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 15680878 - 15680928
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| |||||||| |||||  ||||||||| ||||||||||||    
T  15680878 cgtgtccgacaccgagacacgtctaattcgaggagtgtccgtgcttcatag 15680928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 17852069 - 17852119
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| ||||||| ||||||  ||||||||| ||||||||||||    
T  17852069 cgtgtccgacaccgagacacacctaattcgaggagtgtccgtgcttcatag 17852119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 38143231 - 38143318
Alignment:
Q  261 taataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||| |||| ||||||||||||| ||||||||||  |||| |||||        |||||| ||||||| |||||||||||||| |||||||    
T  38143231 taataatttgaaaaaatcacataatttaatgtaattatatgtgttggtgtc--------agacacacctaatccgaggagtgttcgtgtttcatag 38143318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 43027454 - 43027404
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| || |||||| ||||||||||||    
T  43027454 cgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 6490786 - 6490835
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| | ||||||| ||||| ||||||||| ||||||||||||    
T  6490786 gtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 24105748 - 24105797
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| | ||||||||||| | |||||||||| |||||||||||    
T  24105748 gtgtccgacaccgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 26733279 - 26733348
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||| |||||  | |||| ||||||||||| | || ||||||||||| ||| ||||||    
T  26733279 gacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaatta 26733348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 27093471 - 27093426
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| ||||||||||| | || ||||||||||||||||||||||||    
T  27093471 acaccgctaataatttaagaaaatcacataatttagtgtaattata 27093426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 27184830 - 27184875
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||| ||||||||||| | || ||||||||||||||||||||||||    
T  27184830 acaccgctaataatttaagaaaatcacataatttagtgtaattata 27184875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 2334331 - 2334379
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||| |||||| ||||||||| |||| |||||||    
T  2334331 tgtccgacactgaaacacgtctaatccgaggagtgtccgtgtttcatag 2334379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 7328674 - 7328638
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    ||||||||||||| || ||||||||||||||||||||    
T  7328674 gacacgcctaatccgatgagtgttcgtgcttcataga 7328638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 9408385 - 9408349
Alignment:
Q  261 taataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  9408385 taataatttgaaaaaatcacataatttagtgtaatta 9408349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Original strand, 15902796 - 15902868
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||| ||||| ||||  || ||||   ||||||||| | || ||||||||||||||||||||||||    
T  15902796 ggacacgacacagacactgacatgccgacaccaataataatttgataaaatcacataatttagtgtaattata 15902868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 19213804 - 19213844
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaa 294  Q
    ||||||||||||||||||||| ||||||||||  |||||||    
T  19213804 acactgctaataattttaaaaaatcacataatgcagtgtaa 19213844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 24339726 - 24339774
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||| | ||||||||||||| ||||||||  ||||||||||||||    
T  24339726 tccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagat 24339774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 32094124 - 32094028
Alignment:
Q  209 agcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaata-tcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||| ||  ||||||||||  ||||  |||  |||||||  |||||||||| |||| | |||||||||| |||||||||| ||||||    
T  32094124 agcacggatacggacacaagacacgacacaaacactaacatgccaacacaactaataatttgaaaaaaatcacataattcagtgtaattacaaatgt 32094028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 32287452 - 32287404
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    ||||||||||| | ||||| ||||||| ||||||||| |||||||||||    
T  32287452 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 33994283 - 33994331
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||| |||| |||||||||||||||  ||||||||||||| |||||||    
T  33994283 tgtccaacaccgagacacgcctaatccaaggagtgttcgtgtttcatag 33994331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 354
Target Start/End: Complemental strand, 22440684 - 22440559
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgc 327  Q
    ||||||||| |||||| || ||  | |||| | ||||||||| | || ||||||||||| ||||||||||||  ||  |||||||||||||  |||||||    
T  22440684 gacacgacatggacactgatacatcgacaccgttaataatttgagaaaatcacataattcagtgtaattatatgtga-cgtgtccgacactaggacacgc 22440586  T
Q  328 ctaatcggaggagtgttcgtgcttcat 354  Q
    |||||| ||||||||| ||||||||||    
T  22440585 ctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 29205539 - 29205589
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagat 29205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 34306794 - 34306743
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||||||||    
T  34306794 cgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcataga 34306743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 310
Target Start/End: Original strand, 36635298 - 36635381
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgt 310  Q
    ||||||||| ||||||| ||||| |||||||  |||||||||| | || ||||||||||| ||||||||||||  |||||||||    
T  36635298 ggacacgactcggacactgacacgccaacaccactaataatttgagaaaatcacataattcagtgtaattatatgtgttcgtgt 36635381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 37203265 - 37203373
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgt----tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgc 349  Q
    |||| ||||||||||| |||| || ||||||||||||||||||| || |||    ||| ||||||||| | |||||| |||||| ||| ||||| |||||    
T  37203265 acacggctaataatttgaaaaaatgacataatttagtgtaattacaagtgtagtgtcgggtccgacaccgggacacgtctaatccgagaagtgtccgtgc 37203364  T
Q  350 ttcatagat 358  Q
    |||||||||    
T  37203365 ttcatagat 37203373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 19482748 - 19482798
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  19482748 cgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 15029766 - 15029811
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||    
T  15029766 acactgctaataatttgaaaatatcacataattcagtgtaattata 15029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 23293086 - 23293001
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || ||||||||||||||||  ||||| || |||| ||||||||||| |||| ||||||||||| ||| ||||||    
T  23293086 acggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataatta 23293001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 35158085 - 35157980
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||| ||||| || |||||| |||||||||| ||||| || || |  ||||||||||  ||| ||||||||||||||||||||||||| |||  |||||    
T  35158085 acggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattataagtgtcggtgtc 35157986  T
Q  312 cgacac 317  Q
     |||||    
T  35157985 tgacac 35157980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 3064916 - 3064868
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  3064916 tgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcatag 3064868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 16184902 - 16184950
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  16184902 tgtccgacactgggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 31800585 - 31800493
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||||||  || | |||||| |||||| |||||||||| || |||| |||||||||||||||| || | |||||||| ||||||||    
T  31800585 atgaaacacggatatagacattggacatgacacgaacaccgacacaccgacacagctaataattttaaaaaattaaataatttaatgtaatta 31800493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 311
Target Start/End: Original strand, 19482643 - 19482726
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    |||||||||| ||||| ||||| || ||||  |||||||||| ||||||||||||||||  ||||||||| || |||| |||||    
T  19482643 gacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgttggtgtc 19482726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 28084593 - 28084640
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttca 353  Q
    |||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  28084593 cgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 715593 - 715543
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 715543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 752919 - 752869
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 752869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 10499306 - 10499225
Alignment:
Q  276 atcacataatttagtgtaattataaatgttcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    ||||||||||||||||||||||||  |||  ||||| ||| | || |||||||||||| ||||| ||| ||||||||||||||    
T  10499306 atcacataatttagtgtaattatatgtgtcagtgtcggaccc-gacacacgcctaatccgaggattgtccgtgcttcatagat 10499225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 23292976 - 23292926
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||| | ||||||||||||| ||||||||| ||||||||||||    
T  23292976 cgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 317
Target Start/End: Complemental strand, 12895374 - 12895269
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtc 311  Q
    ||||||||||| || ||| |||||||| |||  ||||| || ||||   ||||||||| |||| |||||||||||| |||||||||||| |||  |||||    
T  12895374 acggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaattataagtgtcggtgtc 12895275  T
Q  312 cgacac 317  Q
     |||||    
T  12895274 ggacac 12895269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 24343472 - 24343553
Alignment:
Q  218 acggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||| || ||||||||||||||| ||||||| || |||| | ||||||||| | || || |||||||| ||||||||||||    
T  24343472 acggacaccggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattata 24343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 11651239 - 11651155
Alignment:
Q  207 gaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtg 291  Q
    |||||||||||||||| |   ||||||| |||||||| |||||  | |||| ||||||||||| |||| ||||||||||| ||||    
T  11651239 gaagcacggatacggacataagacacgatacggacactgacacgtcgacacagctaataatttaaaaaaatcacataattcagtg 11651155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 16073465 - 16073513
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| |||||||||||||| ||||||||| | ||||||||||    
T  16073465 tgtccgacactaagacacgcctaatccgaggagtgtccatgcttcatag 16073513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 24343582 - 24343634
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| | |||||||||| || ||||||||| ||||||||||||||    
T  24343582 cgtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 8423776 - 8423713
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||| ||||||||||| | || ||||||||||| |||||||||||||||||  ||||| |||||    
T  8423776 acaccgctaataatttgagaaaatcacataattcagtgtaattataaatgtcggtgtcggacac 8423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 356
Target Start/End: Complemental strand, 12895249 - 12895214
Alignment:
Q  321 gacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||||||||||||    
T  12895249 gacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 359
Target Start/End: Complemental strand, 2361966 - 2361912
Alignment:
Q  305 tcgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagatg 359  Q
    ||||||| ||||| ||||||| ||||||| || |||||| |||||||||||||||    
T  2361966 tcgtgtctgacaccgagacacacctaatctgacgagtgtccgtgcttcatagatg 2361912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 14126197 - 14126123
Alignment:
Q  226 tggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||||| |||||  |||| || |||||| ||||||||| | ||  |||||||||| |||||||||||||    
T  14126197 tggacacgacacagacactaacacgccgacactgttaataatttgataaagtcacataattcagtgtaattataa 14126123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 28964234 - 28964188
Alignment:
Q  310 tccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| ||||||||||||| ||||||||| | ||||||||||    
T  28964234 tccgacactgggacacgcctaatccgaggagtgtccatgcttcatag 28964188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 29205442 - 29205488
Alignment:
Q  251 ccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||| ||||||||||| |||| ||||||||||| ||||||||||    
T  29205442 ccaacacggctaataatttgaaaaaatcacataattcagtgtaatta 29205488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 299
Target Start/End: Original strand, 13134451 - 13134496
Alignment:
Q  254 acactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    |||||||| ||||||| | || ||||||||||||||||||||||||    
T  13134451 acactgcttataatttaagaaaatcacataatttagtgtaattata 13134496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 14465055 - 14465006
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    ||||| |||||||| |||||| |||||| ||||||||| |||||||||||    
T  14465055 cgtgttcgacactgggacacgtctaatctgaggagtgtccgtgcttcata 14465006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 18513224 - 18513175
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||   ||||||||||||| ||||||||| ||||||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 20633541 - 20633590
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||| |||||  ||||||||||||||  |||||||||||||||||||||    
T  20633541 gtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcatag 20633590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 27706261 - 27706192
Alignment:
Q  228 gacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||||| |||||  | ||||   ||||||||| |||| ||||||||||||||||||||||    
T  27706261 gacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaatta 27706192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 44081557 - 44081508
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    ||||| ||||||||||||| | |||||| || ||||||||||||||||||    
T  44081557 cgtgttcgacactgagacatgtctaatctgaagagtgttcgtgcttcata 44081508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 54580075 - 54580018
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacac 317  Q
    |||||||||| |||| ||||||||||| ||||||||||||| |||  ||||| |||||    
T  54580075 ctaataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcggacac 54580018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 2362042 - 2361990
Alignment:
Q  245 gacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| || |||| ||||||||||| |||| || |||||||||||||||||||    
T  2362042 gacacaccgacacagctaataatttgaaaaaattacataatttagtgtaatta 2361990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 3947872 - 3947781
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||| | |||||||| || |||||| |||| ||||| ||||  || |||| ||||||||||| |||| ||| ||||||| ||||||||||    
T  3947872 atgaagctcagatacggacac-ggacaccacacagacacggacatgccgacacagctaataatttgaaaaaatcgcataattcagtgtaatta 3947781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 5414257 - 5414185
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattata 299  Q
    ||||||||||||||||| ||||| || |||| ||||||  ||||| || |||||| |||  ||||||||||||    
T  5414257 ggacacgacacggacacggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattata 5414185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 6485662 - 6485626
Alignment:
Q  261 taataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  6485662 taataatttgaaaaaatcacataatttagtgtaatta 6485626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 8423706 - 8423658
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||| | ||||||||||||||||| ||||| ||||| ||||||    
T  8423706 tgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 11596345 - 11596297
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||  | ||||||||||||| ||||||||| ||||||||||||    
T  11596345 tgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 14465154 - 14465090
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| ||||||| |||||  |||||||||| |||| ||||||||||| | ||||||||    
T  14465154 gacacagacactgacactctaacacacctaataatttgaaaaaatcacataattcaatgtaatta 14465090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 40965341 - 40965389
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    |||||||||||  |||||||||||||| |||||||||  ||||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcata 40965389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 8757 - 8842
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || ||||||||||||||||| ||||| || |||| ||||||||||| |||| |||| || ||||||||||||||    
T  8757 acggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaatta 8842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 8867 - 8919
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||||| ||||||||||||||| ||||||| | ||||||||||||||    
T  8867 cgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatagat 8919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 356
Target Start/End: Original strand, 46656 - 46776
Alignment:
Q  227 ggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgttcgtgtccgacactgagacacg 326  Q
    ||||||||||||||||  ||||| || |||| | ||||||||| |||| ||||||||||| |||||||||| ||||||  |||||         ||||||    
T  46656 ggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaaatgtcggtgtc---------gacacg 46746  T
Q  327 cctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| ||||||||| ||||||||||||    
T  46747 cctaatccgaggagtgtccgtgcttcatag 46776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 304
Target Start/End: Original strand, 90806 - 90894
Alignment:
Q  216 atacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataaatgt 304  Q
    |||||||||||||||||||||| ||||| ||||| |||||||   ||||||||| | || |||| |||||| |||||||||||| ||||    
T  90806 atacggatactggacacgacacagacactgacacaccaacaccattaataatttgagaaaatcatataattcagtgtaattatatatgt 90894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 263472 - 263384
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    ||||| ||||| |||||| ||||||||||||| ||||   |||||||||||||||||| | || | ||||||||| |||||||||||||    
T  263472 acggacacggacactggatacgacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataa 263384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 357
Target Start/End: Original strand, 14596 - 14647
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcataga 357  Q
    |||||||||||| |||||||||||||||| |||||||| |||||||||||||    
T  14596 cgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcataga 14647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 300
Target Start/End: Original strand, 23373 - 23467
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaattataa 300  Q
    |||||||||||||||||| || ||||||||||| ||||| ||||| || |||| | |||||| |  |||| ||||||||||| |||||||||||||    
T  23373 atgaagcacggatacggacac-ggacacgacacagacactgacacgccgacacagataataactcaaaaaaatcacataattcagtgtaattataa 23467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Original strand, 13352 - 13444
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||| | ||||||||||| ||||| || ||||  |||||||||| | || ||||||||||| |||| |||||    
T  13352 atgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 205 - 297
Target Start/End: Complemental strand, 21975 - 21883
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||||||||||| || ||| | ||||||||||| ||||| || ||||  |||||||||| | || ||||||||||| |||| |||||    
T  21975 atgaagcacggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaatta 21883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 51791 - 51855
Alignment:
Q  233 gacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||||||||| ||||| || |||| ||||||||||| |||| ||||||||||| ||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 206 - 297
Target Start/End: Complemental strand, 178925 - 178833
Alignment:
Q  206 tgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatca-cataatttagtgtaatta 297  Q
    |||||||||||||  || || ||||||||||||||||| ||||| || ||||  |||||||||| |||| |||| ||||||| ||||||||||    
T  178925 tgaagcacggatattgacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcatcataattcagtgtaatta 178833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 4869 - 4819
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    |||||||||| | ||||||||||||| ||||||||| ||||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagat 4819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 562 - 477
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || | ||||| ||||||||| || || || |||||||||||||||| |||| |||||| |||| ||||||||||    
T  562 acggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaatta 477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 452 - 403
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcata 355  Q
    |||||||||||| | ||||| ||||||| ||||||||| |||||||||||    
T  452 cgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Complemental strand, 8614 - 8562
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatagat 358  Q
    ||||||||||||||  |||||||||||  ||||||||| ||||||||||||||    
T  8614 cgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagat 8562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 269
Target Start/End: Complemental strand, 17977 - 17913
Alignment:
Q  205 atgaagcacggatacggatactggacacgacacggacaccgacactccaacactgctaataattt 269  Q
    |||||||||||||||||| ||||||||||| ||  ||||| |||| || |||| |||||||||||    
T  17977 atgaagcacggatacggacactggacacgatacaaacaccaacacgcctacaccgctaataattt 17913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 3384 - 3427
Alignment:
Q  313 gacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  3384 gacactgggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0512 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 5026 - 4976
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||| ||||||| |||||||| |||||||||  |||||||||||    
T  5026 cgtgtccgacattgagacatgcctaatccgaggagtgtctgtgcttcatag 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 8670 - 8720
Alignment:
Q  306 cgtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||||||| || ||||||||||  |||||||| ||||||||||||    
T  8670 cgtgtccgacactgggatacgcctaatccaaggagtgtccgtgcttcatag 8720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 7363 - 7318
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaattataaatgtt 305  Q
    ||||||||||  ||| ||||||||||||||||||||||||| ||||    
T  7363 ctaataatttggaaaaatcacataatttagtgtaattataagtgtt 7318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 24107 - 24155
Alignment:
Q  307 gtgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| ||||||||||||| || |||||| ||||||||||||    
T  24107 gtgtccgacactg-gacacgcctaatccgatgagtgtccgtgcttcatag 24155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 297
Target Start/End: Original strand, 130441 - 130526
Alignment:
Q  212 acggatacggatactggacacgacacggacaccgacactccaacactgctaataattttaaaatatcacataatttagtgtaatta 297  Q
    ||||| ||||| || ||||||||||||||||  ||||  || |||| | ||||| ||| |||| ||||||||||| ||||||||||    
T  130441 acggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaatta 130526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 3026 - 2978
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    ||||||||||||| |||||||||||  | ||||||| ||||||||||||    
T  3026 tgtccgacactgaaacacgcctaatatggggagtgtccgtgcttcatag 2978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Complemental strand, 17801 - 17764
Alignment:
Q  260 ctaataattttaaaatatcacataatttagtgtaatta 297  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  17801 ctaataatttgaaaaaatcacataatttagtgtaatta 17764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 3826 - 3778
Alignment:
Q  308 tgtccgacactgagacacgcctaatcggaggagtgttcgtgcttcatag 356  Q
    |||||||||  ||||||||||||||| ||||||||| | ||||||||||    
T  3826 tgtccgacatcgagacacgcctaatccgaggagtgtccttgcttcatag 3778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University