View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10568_low_3 (Length: 352)
Name: NF10568_low_3
Description: NF10568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10568_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 26314517 - 26314196
Alignment:
| Q |
19 |
attatagggactaatcataaagagaatccaagactctatatcaagtgagaaaaataaaagatttatctatcttggtgatggtagtggagattattgtcca |
118 |
Q |
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| T |
26314517 |
attacagggactaatcataaagagaatccaagactctatatcaagtgagaaaaataaaagatttatctatcttggtgatggtagtggagattattgtcca |
26314418 |
T |
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| Q |
119 |
agcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaattt |
218 |
Q |
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| T |
26314417 |
agcttaagccttaaagaaaaagactttgtgatgccaaggaagaattttcctgtatgggacttgatatgcaaagatccttcacttgttaaagctaaaattt |
26314318 |
T |
|
| Q |
219 |
atgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaa |
318 |
Q |
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| T |
26314317 |
atgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaa |
26314218 |
T |
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| Q |
319 |
catgcatgctttatcgttttct |
340 |
Q |
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| T |
26314217 |
catgcatactccatcgttttct |
26314196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 43109471 - 43109167
Alignment:
| Q |
14 |
atatgattatagggactaatcataaagagaatccaagactctatatcaagtgagaaaaataaaagatttatctatcttggtgatggtagtggagattatt |
113 |
Q |
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| T |
43109471 |
atatcattacagggtctaatcataaatagaatccaagagtctatatcatgtgaagagaataaaaggtttatctatcttggggatggtagtggagattatt |
43109372 |
T |
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| Q |
114 |
gtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaa |
213 |
Q |
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| T |
43109371 |
gtccaagcttgaggcttaaagaaaaagactttgtgatgccaaggaagaattttcctgtgtgggatttaatttgcaaagatccttcacttgttaaagctaa |
43109272 |
T |
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| Q |
214 |
aatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaa |
313 |
Q |
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||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
43109271 |
aatttatgaatggagtgatggtgaagatcaagaaagggttttgcatcaattaatcaacaaaatatcaatggaagaaactgctgaattcatttcaactgaa |
43109172 |
T |
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| Q |
314 |
ttcaa |
318 |
Q |
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||||| |
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| T |
43109171 |
ttcaa |
43109167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 80 - 308
Target Start/End: Original strand, 5251771 - 5251999
Alignment:
| Q |
80 |
tttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggcct |
179 |
Q |
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| T |
5251771 |
tttatctaccttggtgatggcattggagattattgtcctagtttaaggcttagagagaaagatttcatgatgccaaggaagaattttccagtgtgggatt |
5251870 |
T |
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| Q |
180 |
tgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatttc |
279 |
Q |
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| T |
5251871 |
tgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaagagcttgaacaaattttgattcaattgatcaacaaaattat |
5251970 |
T |
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| Q |
280 |
aatggaagaaagtgctcaattcatttcaa |
308 |
Q |
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| T |
5251971 |
cattgaggaaaatgctcaattcatttcaa |
5251999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 80 - 277
Target Start/End: Complemental strand, 5272058 - 5271861
Alignment:
| Q |
80 |
tttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggcct |
179 |
Q |
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|||||||| |||||||||||| |||||||||||| || ||||| || ||||||| | |||||||||||||||||||||||||||||| || |||| | |
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| T |
5272058 |
tttatctaccttggtgatggtgctggagattattgccctagcttgaggtttaaagagagagactttgtgatgccaaggaagaattttccagtgtgggatt |
5271959 |
T |
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| Q |
180 |
tgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaagagttttgcatcaattaatcaacaaaatt |
277 |
Q |
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| T |
5271958 |
tgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaagagcttgaacaaattttgattcaattgatcaacaaaatt |
5271861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 77 - 240
Target Start/End: Original strand, 5269612 - 5269775
Alignment:
| Q |
77 |
agatttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatggg |
176 |
Q |
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||||||||||| |||||||||||| ||| || ||||| || ||||| || |||| ||| | |||||||||||||||||||||||||||||| || |||| |
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| T |
5269612 |
agatttatctaccttggtgatggtgctggggactattgccctagcttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtggg |
5269711 |
T |
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| Q |
177 |
ccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
240 |
Q |
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| T |
5269712 |
atttgatatgcaaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaaga |
5269775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 5276047 - 5275887
Alignment:
| Q |
80 |
tttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatgggcct |
179 |
Q |
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|||||||| |||||||||||| || || ||||| || || || || |||| ||| | |||||||||||||||||||||||||||||| || |||| | |
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| T |
5276047 |
tttatctaccttggtgatggtgcaggggactattgccctagtttgaggcttagagaaagagactttgtgatgccaaggaagaattttccagtgtgggatt |
5275948 |
T |
|
| Q |
180 |
tgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
240 |
Q |
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||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |
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| T |
5275947 |
tgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
5275887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 14945038 - 14945163
Alignment:
| Q |
77 |
agatttatctatcttggtgatggtagtggagattattgtccaagcttaagccttaaagataaagactttgtgatgccaaggaagaattttcctgtatggg |
176 |
Q |
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| T |
14945038 |
agatttatctaccatggtgatggtattggagactattgccctagtttgagacttagagaaagagactttgttatgtcaaggaagaactttccagtatggg |
14945137 |
T |
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| Q |
177 |
ccttgatatgcaaagatccttcactt |
202 |
Q |
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||||||||| ||||| |||| |||| |
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| T |
14945138 |
acttgatatgaaaagaccctttactt |
14945163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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