View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10568_low_4 (Length: 264)
Name: NF10568_low_4
Description: NF10568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10568_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 49269413 - 49269648
Alignment:
| Q |
19 |
cctaaatcgaattttaatggaaagatcagtttgagttggaatatgtttaaaacctggtgcagagaagtacactggcgagccgagttctttagggttacga |
118 |
Q |
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| T |
49269413 |
cctaaatcgaattttaatggaaagatcagtttgagttggaatgtgtttaaaacctggtgcagagaagtacactggcgagccgagttctttagggttacga |
49269512 |
T |
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| Q |
119 |
attacatcaagaggacatgttttgtttcttgttgagcccaatgttaagcctccaatatcatgagcccaaaattgccatacatagtaaccttttcctgact |
218 |
Q |
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| T |
49269513 |
attacatcaagaggacatgttttgtttcttgttgagctcaatgttaagcctccaatatcatgagcccaaaattgccatacatagtaaccttttcctgact |
49269612 |
T |
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| Q |
219 |
caagaggcttaccgtgtctgtctactactctctctg |
254 |
Q |
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| T |
49269613 |
caagaggcttaccgtgtctgtctactactctatctg |
49269648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 150
Target Start/End: Original strand, 49271912 - 49271992
Alignment:
| Q |
70 |
acctggtgcagagaagtacactggcgagccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgt |
150 |
Q |
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| T |
49271912 |
acctgatgcagagaaatacaccggtgtgccgattgcatcagggttacggattacatcaagagggcatgttttgtttcttgt |
49271992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 247
Target Start/End: Original strand, 49277854 - 49278009
Alignment:
| Q |
89 |
actggcgagccgagttctttagggttacgaattacatcaagaggacatgttttgtttcttgttgagcccaatgttaagcctccaatatcatgagcccaaa |
188 |
Q |
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| T |
49277854 |
actggcgagccaatggcttcagggttacggataacatcaagagggcatgttttgtttcttgtttgtcctaatgttatgcctccattgtc---agcccaaa |
49277950 |
T |
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| Q |
189 |
attgccatacatagtaaccttttcctgactcaagaggcttaccgtgtctgtctactact |
247 |
Q |
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| T |
49277951 |
gtggaaatacgtagtaaccttcacctggtttaagagggttaccttgtttgtctactact |
49278009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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