View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10568_low_8 (Length: 224)
Name: NF10568_low_8
Description: NF10568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10568_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 54393402 - 54393208
Alignment:
| Q |
17 |
atttacaatcttctccctctttcactcttccttcccacgcaaccgttcgttacggtgttaacctccgtccttccgcctacggtggcggtggcaacttcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54393402 |
atttacaatcttctccctctttcactcttccttcccacgcaaccgttcgttatggtgttaacctccgtccttccgcctacggtggcggtggcaacttcag |
54393303 |
T |
|
| Q |
117 |
aagacctcctcctgacaaagacgccgacaatgaacaagctctcgacctctccacacttaggtacgtattctaactcatacttgattccatttcat |
211 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54393302 |
aagagctcctcctgagaaagacgccgacgatggacaagctctcgacctctccacacttaggtacgtattctaactcatacttgattccatttcat |
54393208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University