View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10568_low_9 (Length: 205)
Name: NF10568_low_9
Description: NF10568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10568_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 1971578 - 1971743
Alignment:
| Q |
1 |
tctttcgccttgattcatatcttcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtg |
100 |
Q |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
1971578 |
tctttcgccttgattcttatcatcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacgcatgccggtgtaaccac-acgtactttggtg |
1971676 |
T |
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| Q |
101 |
ttctgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt |
167 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1971677 |
ttatgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt |
1971743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 19962559 - 19962725
Alignment:
| Q |
1 |
tctttcgccttgattcatatcttcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtg |
100 |
Q |
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|||||||||||||||| |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
19962559 |
tctttcgccttgattcttatcgtcgatgtactcgctgaagtttttgttgattttctcatgcgttttacacatgcccgtgtaaccacgacgtactttggtg |
19962658 |
T |
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| Q |
101 |
ttctgaaggaagcttttgggtctgttggagctttgtttatcgcggtgagttttgtttatttttaatt |
167 |
Q |
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|| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
19962659 |
ttatgaaggaagcttttgagtctgttggagctttgtttatcacggtgagttttgtttatttttaatt |
19962725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 32394973 - 32395079
Alignment:
| Q |
28 |
gtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtctgttg |
127 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| ||||||||||||||||||| |||| |
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| T |
32394973 |
gtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttttgggtccgttg |
32395072 |
T |
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| Q |
128 |
gagcttt |
134 |
Q |
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||||||| |
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| T |
32395073 |
gagcttt |
32395079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 32392913 - 32393016
Alignment:
| Q |
27 |
tgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccacgacgtactttggtgttctgaaggaagcttttgggtctgtt |
126 |
Q |
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|||||| ||||||||||| || ||||||||||||||||||||| | || ||||||| || ||||| | |||| ||| |||||||||||| |||||| |
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| T |
32392913 |
tgtgcttgctgaagtttcagtggattttctcatgcgttttacagaagcaggtgtaaagacaacgtatgctagtgtgatgagggaagcttttggatctgtt |
32393012 |
T |
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| Q |
127 |
ggag |
130 |
Q |
| |
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|||| |
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|
| T |
32393013 |
ggag |
32393016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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