View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_1 (Length: 958)
Name: NF10569_1
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 703; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 23 - 870
Target Start/End: Complemental strand, 41755058 - 41754215
Alignment:
| Q |
23 |
catcacaataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
122 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41755058 |
catcataataattcaattaaatgtctttggtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagg |
41754959 |
T |
|
| Q |
123 |
gactaagaaatcatatggtgtatacgacaacaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
222 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754958 |
gactaagaaatcatatggtgtatacgacaaca---gcaactctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctca |
41754862 |
T |
|
| Q |
223 |
ccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatattggtaactatcttc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
41754861 |
ccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgttggaagattcagtgatggtcgtgttcttaccgattatattggtaactatcttc |
41754762 |
T |
|
| Q |
323 |
tcatctatggaatactactaaatcacacttttagattattccgattttgtagcatgcatggtagttagtatgcataaaatatttttgttcttatattcta |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41754761 |
tcatctatggaatactactaaatcacacttttagattattccgattttgtagcatgcatggtagttagtatgcataaaatatttttgttcttatattcta |
41754662 |
T |
|
| Q |
423 |
atgacctctagggtttgtcaaataactactacaaaactgggcatagccatactaatttgcactgtt-tattcatttaacctcattttgctctta--ctca |
519 |
Q |
| |
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| T |
41754661 |
atgacctctagggtttgtcaaataactactacaaaactgggcatagccatactaatttgcactgttggtttgatttga-ttcatt---cacttaacctca |
41754566 |
T |
|
| Q |
520 |
tgtatgtatgtgttattaaatgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaact |
619 |
Q |
| |
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|| ||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41754565 |
tgcatgtatgtgttattacatgcagcttcctttttgaaaattgaaacccctgcaccatatgcattgagaaattcctcaactctacaaaatggaatcaact |
41754466 |
T |
|
| Q |
620 |
ttgcttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcnnnnnnn |
719 |
Q |
| |
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| T |
41754465 |
ttgcttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcaaaaaaa |
41754366 |
T |
|
| Q |
720 |
tgtctataccaaacaagaccttcaatcctctgttgcccttgtgacagttgctggcaacgattacgaggcatttatagtaaacaataaaagcattatagtg |
819 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41754365 |
tgtctataccaaacaagaccttcaatcctctgttgcccttgtgacagctgctggcaacgattacgaggcttttatagtaaacaataaaagcattatagtg |
41754266 |
T |
|
| Q |
820 |
agtggttaacataattttacttaacatttatacttacactaagccatggac |
870 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
41754265 |
agtggttaacataattttacttcacatttatacttacactaagccatggac |
41754215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 52 - 393
Target Start/End: Complemental strand, 41760936 - 41760605
Alignment:
| Q |
52 |
gtttattcatttttattgtttcgaaatcatgtgacataagttaatgcaaatgttacagaagtagttgaagggactaagaaatcatatggtgtatacgaca |
151 |
Q |
| |
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|||||||||||||||||| || || |||||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||| || |||| |
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| T |
41760936 |
gtttattcatttttattggttttctattgtgtgacataaattaatgcaaattttacagaagtggtcgaagggactaagaaatcatatggtgtgtatgaca |
41760837 |
T |
|
| Q |
152 |
acaacagcagctctgtaaaattgtttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaaccttatggaatcac |
251 |
Q |
| |
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| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41760836 |
aaaac------tctgtaaaattgtttgtatttggagactcatatgctgatacaggcaattttatgggctcaccatcgtacaagcaaccttatggaatcac |
41760743 |
T |
|
| Q |
252 |
atttcctggtaaacctgctggaagattcagtaatggtcgtgttcttaccgattatattggtaactatcttctc-atctatggaatactactaaatcacac |
350 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||| ||| |||||||||| || |
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| T |
41760742 |
atttcctggtaaacctgctggaagattcagtgatggtcgtgttcttaccgattacattggtaacaatcttctctctctattgaa---tactaaatcatac |
41760646 |
T |
|
| Q |
351 |
ttttagattattccgattttgtagcatgcatggtagttagtat |
393 |
Q |
| |
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| |||||| | ||||||||| |||||| |||||||||||||| |
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| T |
41760645 |
tgttagatcaatccgattttatagcat--atggtagttagtat |
41760605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 521 - 814
Target Start/End: Complemental strand, 41758789 - 41758502
Alignment:
| Q |
521 |
gtatgtatgtgttattaaatgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaactt |
620 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41758789 |
gtatgtatgtgttattaaatgcagcttcctttctgaaaattaaaacccctacaccatatgcattgagaaattcctcaactctacaaaatggaatcaactt |
41758690 |
T |
|
| Q |
621 |
tgcttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcnnnnnnnt |
720 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| |||| | |
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| T |
41758689 |
tgcttatggaggaacaggtgttttccaaacat------tgaccaatggaccaaacatgactgttcaaattgactcacttgagaagctaatcaaacaaaat |
41758596 |
T |
|
| Q |
721 |
gtctataccaaacaagaccttcaatcctctgttgcccttgt-gacagttgctggcaacgattacgaggcatttatagtaaacaataaaagcatta |
814 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| | || || ||||||| |||||| || ||| |||||||||||| |||||||| |
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| T |
41758595 |
gtctataccaaacaagacctccaatcctctgttgctcttgtcgtcaatt-ctggcaatgattacactgcttttttagtaaacaatagaagcatta |
41758502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 41749311 - 41749211
Alignment:
| Q |
175 |
tttgtatttggagattcatatgctgacacaggaaattttgtgggctcaccatcgtacaagcaaccttatggaatcacatttcctggtaaacctgctggaa |
274 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||||||| | ||||||||| || |||| |||||||||||||| ||||||||||||||| |||||| |
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|
| T |
41749311 |
tttgtatttggagactcatatgttgatacaggaaattactttacctcaccatcatataagcttccttatggaatcacttttcctggtaaaccttctggaa |
41749212 |
T |
|
| Q |
275 |
g |
275 |
Q |
| |
|
| |
|
|
| T |
41749211 |
g |
41749211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 749
Target Start/End: Complemental strand, 41748140 - 41747936
Alignment:
| Q |
539 |
atgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaactttgcttttggaggaacagg |
638 |
Q |
| |
|
||||||||||||||||||| || || |||||| ||||||| |||||| || || ||| |||||| |||| || |||||||| | |||||| || || |
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|
| T |
41748140 |
atgcagcttcctttctgaatataaaatcccctagaccatattcattgaagaaatcctcagaactacaatatggcatgaactttgcctatggagggactgg |
41748041 |
T |
|
| Q |
639 |
tgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcnnnnnnntgtctataccaaacaagac |
738 |
Q |
| |
|
||||||||| || |||| | |||||||||| |||||||||||||| ||| || ||||||||||||| | ||| |||||||||| ||| |
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|
| T |
41748040 |
tgttttccatactttgattg------atggaccaaacatgactgtccaaatcgacacatttgagaagttaatccaacaaaatgtgtataccaaacccgac |
41747947 |
T |
|
| Q |
739 |
cttcaatcctc |
749 |
Q |
| |
|
||||||||||| |
|
|
| T |
41747946 |
cttcaatcctc |
41747936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 539 - 593
Target Start/End: Complemental strand, 41734471 - 41734417
Alignment:
| Q |
539 |
atgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattc |
593 |
Q |
| |
|
|||||||||||||| ||||||| || |||| ||||| ||||||||||||||||| |
|
|
| T |
41734471 |
atgcagcttcctttttgaaaataaaatcccccacaccgtatgcattgagaaattc |
41734417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 42225971 - 42225933
Alignment:
| Q |
168 |
aaaattgtttgtatttggagattcatatgctgacacagg |
206 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
42225971 |
aaaattgtttgtctttggagattcatatgcagacacagg |
42225933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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