View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_11 (Length: 360)
Name: NF10569_11
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 43377837 - 43377487
Alignment:
| Q |
10 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
109 |
Q |
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| T |
43377837 |
cagagaaacaaaccttcacacaatcatatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatag |
43377738 |
T |
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| Q |
110 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattg |
209 |
Q |
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| T |
43377737 |
agacaaatgacaacaaaccacaactttttgtttcaattttgttgcttcttgaagaatattattcaaccattctatttgtttctttccaatacctccattg |
43377638 |
T |
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| Q |
210 |
aacatgagaaaccttctttcaagtccaaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttt |
309 |
Q |
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| T |
43377637 |
aacatgagaaaccttctttcaagtccaactaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctccgatgttt |
43377538 |
T |
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| Q |
310 |
tatgatgatcttttggccaaccaattgcacttatatcatatccatcaagaa |
360 |
Q |
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| T |
43377537 |
tatgatgatcttttggccaaccaattgcacttatatcatatccatcaagaa |
43377487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 349
Target Start/End: Complemental strand, 34428800 - 34428487
Alignment:
| Q |
36 |
tatctatgtatcaaatttatcacttcatcataattccacaacaatgcttccttagatgatgcaccaggatatagagacaaatgacaacaaaccacaactt |
135 |
Q |
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| T |
34428800 |
tatctgtgtatcaaattcatcacttcatcacaattccacagtagcgcctcctcggatgttgcacaaggatctagaggcagatggcatgtgacaaccactt |
34428701 |
T |
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| Q |
136 |
tttgtttcaattttgttgcttcttgaagaatattattcaaccattccatttgtttctttccaatacctccattgaacatgagaaaccttctttcaagtcc |
235 |
Q |
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| T |
34428700 |
tctgtttcaatttggttgcatcctggagaataccatccaaccattccatctgttcctttccaacacctccgttaaacataagaaaccttctttcaagccc |
34428601 |
T |
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| Q |
236 |
aaccaaacctgttggactattcttatcttcatttggattcttctctttgagaaatttcattgcctctgatgttttatgatgatcttttggccaaccaatt |
335 |
Q |
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| T |
34428600 |
ctttaaattatttggactattcttatcttcatttggattcttctccctaagcaatttcaaggcctccaatgtttttggatgatcctgaggccaaccaatg |
34428501 |
T |
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| Q |
336 |
gcacttatatcata |
349 |
Q |
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| T |
34428500 |
gcactgatgtcata |
34428487 |
T |
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