View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_13 (Length: 349)
Name: NF10569_13
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_13 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 33618719 - 33618386
Alignment:
| Q |
16 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattagctaacaaaaggatagataggtttagttcgcttaccaagca |
115 |
Q |
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| T |
33618719 |
atgacgcaatgatgttaaacaacttaaaaatatatttcatagggacacaaaatatattaactaacaaaaagatagataggtttagttcgcttaccaagca |
33618620 |
T |
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| Q |
116 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
215 |
Q |
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| T |
33618619 |
gacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaaaggctaacagatcca |
33618520 |
T |
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| Q |
216 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagctgtt |
315 |
Q |
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| T |
33618519 |
agtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgtt |
33618420 |
T |
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| Q |
316 |
ggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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| T |
33618419 |
ggaaaaacgggattgcaaatgccatcaccaagtg |
33618386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 101 - 349
Target Start/End: Complemental strand, 33609459 - 33609211
Alignment:
| Q |
101 |
ttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagacaaa |
200 |
Q |
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| T |
33609459 |
ttcgcttaccaagcagacaaacatcataatacccccagttatgaacaggaatcttcgaccaaatcgatcaacaataccggcagagataacgttagacaca |
33609360 |
T |
|
| Q |
201 |
aggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttga |
300 |
Q |
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| T |
33609359 |
aggctaacggatccaagtacaatggcggaaattaaagcgccgtcacgtcccaagcccacagaatggaagaggttaggtgaatagaaagcgacgatgttga |
33609260 |
T |
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| Q |
301 |
tccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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| T |
33609259 |
tcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtg |
33609211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 33588632 - 33588495
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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| T |
33588632 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33588533 |
T |
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| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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| T |
33588532 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtg |
33588495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 33595804 - 33595667
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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| T |
33595804 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33595705 |
T |
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| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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| T |
33595704 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtg |
33595667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 212 - 349
Target Start/End: Complemental strand, 33602935 - 33602798
Alignment:
| Q |
212 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgttgatccctgtaagc |
311 |
Q |
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|||||| |||| ||| ||||||||||| |||| || ||| ||||||||||| ||||||||||| |||||||| || || ||||||||||||||||||| | |
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| T |
33602935 |
tccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaac |
33602836 |
T |
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| Q |
312 |
tgttggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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| T |
33602835 |
tgttgaaaaaatgggattgaaaatgccatgaccaagtg |
33602798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 349
Target Start/End: Complemental strand, 33627851 - 33627601
Alignment:
| Q |
99 |
agttcgcttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaacaataccagcagagataaggttagaca |
198 |
Q |
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||||| |||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||||| |||||||| || | || ||||| ||| |||| |
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| T |
33627851 |
agttcacttaccaagcagacaaacatgataatacccccagtaatgaacaagaatcttcgaccaaatcgatcaataacagtagaagagacgaggatagatg |
33627752 |
T |
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| Q |
199 |
aaaggctaacagatccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatgtt |
298 |
Q |
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| T |
33627751 |
caaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaatagaaagcaataatgtt |
33627652 |
T |
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| Q |
299 |
gatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtg |
349 |
Q |
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||||||||||| ||||| |||||||||||||| | ||||| |||||||| |
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| T |
33627651 |
gatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtg |
33627601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 33622824 - 33622758
Alignment:
| Q |
105 |
cttaccaagcagacaagcatcataattcccccagatatgaacaagaatcttcgaccaattcgatcaa |
171 |
Q |
| |
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||||| |||||||||| |||||||| ||||| | ||||||||||||||||||||||| || ||||| |
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| T |
33622824 |
cttacaaagcagacaaacatcataacacccccggttatgaacaagaatcttcgaccaaatctatcaa |
33622758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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