View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_14 (Length: 348)
Name: NF10569_14
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 30088468 - 30088684
Alignment:
| Q |
27 |
aaatctcaccaagcttatacttttcaacaatgccttcaagggtccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaac |
126 |
Q |
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| T |
30088468 |
aaatctcaccaagcttatacttttcaacaatgccttcaagggtccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaac |
30088567 |
T |
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| Q |
127 |
aattttctttctggtacaattcctgttggttttggtaagcttgagaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgagg |
226 |
Q |
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| T |
30088568 |
aattttttttctggtacaattcctgttggttttggtaagcttgagaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgagg |
30088667 |
T |
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| Q |
227 |
acattgcttcttccaca |
243 |
Q |
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| T |
30088668 |
acattgcttcttccaca |
30088684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 39469482 - 39469269
Alignment:
| Q |
28 |
aatctcaccaagcttatacttttcaacaatgccttcaagggtccgattccaacaagcctatccaaatgtccttcactcgttcgtgttcggattcaaaaca |
127 |
Q |
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| T |
39469482 |
aatcttaccaagctaatacttttcaacaatgctttctctggtccaattccatcaagcctatcaatgtgttcttctcttgttcgtgttcgaattcacaaca |
39469383 |
T |
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| Q |
128 |
attttctttctggtacaattcctgttggttttggtaagcttgagaagcttcagaggctagaattggctaacaatagtctcactggtggaattcctgagga |
227 |
Q |
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| T |
39469382 |
attttctttctggaaaagttcctgttggtcttggcaagcttgagaagcttcaaaggttagaattagcaaacaatagtctcactggtgaaattccagatga |
39469283 |
T |
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| Q |
228 |
cattgcttcttcca |
241 |
Q |
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| T |
39469282 |
tattccttcttcca |
39469269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 249 - 348
Target Start/End: Complemental strand, 8682843 - 8682744
Alignment:
| Q |
249 |
tgctcgttcactggctgtggtgctggcttcacttcctctacttttgtgccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
348 |
Q |
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| T |
8682843 |
tgctctttcactggctgtggtgctggcttcacttcctctacttttgagccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
8682744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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