View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_17 (Length: 315)
Name: NF10569_17
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2789529 - 2789314
Alignment:
| Q |
1 |
aattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggc |
100 |
Q |
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| T |
2789529 |
aattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggc |
2789430 |
T |
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| Q |
101 |
acaatcaacaatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtcc |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2789429 |
acaatcaacaatatcacatccatcagctccattttgctttgctttctcacactcattcaagaatgtattgaatgcaacctcgacatatttaactgcgtcc |
2789330 |
T |
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| Q |
201 |
aaaacacacaggttct |
216 |
Q |
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|||||||||| ||||| |
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| T |
2789329 |
aaaacacacatgttct |
2789314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2830783 - 2830568
Alignment:
| Q |
1 |
aattatatgcaaagttaattattcaccgatcacaggttatacaagacaacatcttgtgaaagaaattttcggaattgcgacgtgtactgcatgtattggc |
100 |
Q |
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|||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||| || |
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| T |
2830783 |
aattatgtgcaaagttaactattcaccgatcacgtgttatacaagacaacatcttgtgaaagaaatttttggaattgggtagtttactgcatgtattagc |
2830684 |
T |
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| Q |
101 |
acaatcaacaatatcacatccatcagcgccattttgctttgctttctcacactcattcaagaatgtattgaatgcatcctcgacatatttaactgcgtcc |
200 |
Q |
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| T |
2830683 |
acaatcaacaatatcacatccatcagctccattttgcttggctttctcacactcattcaaaaatgtattgaatgcatcctcggcatatttaactgcgtcc |
2830584 |
T |
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| Q |
201 |
aaaacacacaggttct |
216 |
Q |
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||||||||| ||||| |
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| T |
2830583 |
gaaacacacatgttct |
2830568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 8682843 - 8682744
Alignment:
| Q |
216 |
tgctcgttcactggctgtggtgctggcttcacttcctctacttttgtgccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
315 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8682843 |
tgctctttcactggctgtggtgctggcttcacttcctctacttttgagccaccacctgcatttttaccaccgccttcattggccgttttgttgtcatcac |
8682744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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