View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_18 (Length: 311)
Name: NF10569_18
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_18 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 33253461 - 33253755
Alignment:
| Q |
1 |
caacatagtgggagaacttttctatcttttccaaacgaccagattctgatctaccaacatgaggaatgatcttctcatctgtcaccaccgtggactcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
33253461 |
caacatagtgggagaacttttctatcttttccaaacgaccagattctgttctatcaacgtgaggaatgatcttatcatctgtcaccaccgtggactcttg |
33253560 |
T |
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| Q |
101 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccggcaaaggaggcagccagaacatgtgtgagccggatggctttaccaataccatctgaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33253561 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccggcaaaggaggcagctagaacatgtgtgagccggatggctttaccaataccatctgaaaaa |
33253660 |
T |
|
| Q |
201 |
cattatgaaccaaattgaattgaacatatgcttagtattttatgttttgtgaatgaaagaagaatgaagagaaaaagataaaataccttgctccat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| || |||||||||||||||| |
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| T |
33253661 |
cattatgaaccaaattgaattgaacatatgcttagtattttat-ttttgtgaatgaaagaagaataaagagagaaaaattaaataccttgctccat |
33253755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 33273633 - 33273927
Alignment:
| Q |
1 |
caacatagtgggagaacttttctatcttttccaaacgaccagattctgatctaccaacatgaggaatgatcttctcatctgtcaccaccgtggactcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
33273633 |
caacatagtgggagaacttttctatcttttccaaacgaccagattctgttctatcaacgtgaggaatgatcttatcatctgtcaccaccgtggactcttg |
33273732 |
T |
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| Q |
101 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccggcaaaggaggcagccagaacatgtgtgagccggatggctttaccaataccatctgaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273733 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccggcaaaggaggcagctagaacatgtgtgagccggatggctttaccaataccatctgaaaaa |
33273832 |
T |
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| Q |
201 |
cattatgaaccaaattgaattgaacatatgcttagtattttatgttttgtgaatgaaagaagaatgaagagaaaaagataaaataccttgctccat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| || |||||||||||||||| |
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| T |
33273833 |
cattatgaaccaaattgaattgaacatatgcttagtattttat-ttttgtgaatgaaagaagaataaagagagaaaaattaaataccttgctccat |
33273927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33284791 - 33284970
Alignment:
| Q |
1 |
caacatagtgggagaacttttctatcttttccaaacgaccagattctgatctaccaacatgaggaatgatcttctcatctgtcaccaccgtggactcttg |
100 |
Q |
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||||||| |||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33284791 |
caacataatgggtgaacttttctctcttttccaaacgaccagattctgttctatcaacatgaggaatgatcttctcatctgtcaccactgtggactcttg |
33284890 |
T |
|
| Q |
101 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccggcaaaggaggcagccagaacatgtgtgagccggatggctt |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||| |
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| T |
33284891 |
cttccggtaacgcgaggcagcagccgcggcaatcaaaccgtcaaaggaggcagctagaacatgtgtgaggcggattgctt |
33284970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 33284996 - 33285035
Alignment:
| Q |
257 |
aagaagaatgaagagaaaaagataaaataccttgctccat |
296 |
Q |
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|||||||||||||||||| | ||||||||||||||||||| |
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| T |
33284996 |
aagaagaatgaagagaaacaaataaaataccttgctccat |
33285035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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