View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10569_2 (Length: 877)

Name: NF10569_2
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10569_2
NF10569_2
[»] chr2 (11 HSPs)
chr2 (364-859)||(16315363-16315864)
chr2 (359-852)||(12807740-12808232)
chr2 (359-784)||(32991072-32991496)
chr2 (617-667)||(36804155-36804205)
chr2 (623-667)||(18844486-18844530)
chr2 (624-667)||(18489051-18489094)
chr2 (626-665)||(35488082-35488121)
chr2 (617-667)||(36804370-36804420)
chr2 (626-667)||(8066082-8066123)
chr2 (278-327)||(12332002-12332051)
chr2 (609-654)||(31071636-31071681)
[»] chr8 (9 HSPs)
chr8 (493-778)||(9781257-9781542)
chr8 (233-282)||(37811377-37811426)
chr8 (616-667)||(32266805-32266856)
chr8 (616-667)||(7924629-7924680)
chr8 (628-667)||(12134571-12134610)
chr8 (616-667)||(13396631-13396682)
chr8 (616-667)||(41665215-41665266)
chr8 (616-667)||(172346-172397)
chr8 (616-667)||(8300046-8300097)
[»] chr3 (11 HSPs)
chr3 (712-858)||(7516736-7516882)
chr3 (233-276)||(17027-17070)
chr3 (616-667)||(2364520-2364571)
chr3 (616-667)||(7313019-7313070)
chr3 (616-667)||(10323417-10323468)
chr3 (620-667)||(19920079-19920126)
chr3 (616-667)||(34332661-34332712)
chr3 (623-668)||(9509996-9510041)
chr3 (623-668)||(9517971-9518016)
chr3 (626-667)||(18368811-18368852)
chr3 (615-668)||(44888146-44888199)
[»] chr5 (6 HSPs)
chr5 (609-672)||(23878391-23878454)
chr5 (616-667)||(23238627-23238678)
chr5 (616-667)||(27117007-27117058)
chr5 (616-667)||(30732160-30732211)
chr5 (616-667)||(42513963-42514014)
chr5 (616-667)||(12825442-12825493)
[»] chr4 (9 HSPs)
chr4 (233-282)||(42060268-42060317)
chr4 (614-700)||(35324209-35324295)
chr4 (616-667)||(23642437-23642488)
chr4 (615-667)||(15740464-15740516)
chr4 (278-338)||(42059568-42059628)
chr4 (617-668)||(4640526-4640577)
chr4 (616-667)||(19755510-19755561)
chr4 (616-667)||(19784245-19784296)
chr4 (616-667)||(47419047-47419098)
[»] scaffold0472 (1 HSPs)
scaffold0472 (616-667)||(3495-3546)
[»] chr7 (9 HSPs)
chr7 (752-860)||(43004031-43004139)
chr7 (616-667)||(4937974-4938025)
chr7 (616-667)||(11277098-11277149)
chr7 (624-667)||(11338990-11339033)
chr7 (617-668)||(22819564-22819615)
chr7 (616-667)||(29968217-29968268)
chr7 (616-666)||(37919788-37919838)
chr7 (626-667)||(18671413-18671454)
chr7 (614-667)||(28173820-28173873)
[»] scaffold0034 (1 HSPs)
scaffold0034 (616-667)||(105689-105740)
[»] chr6 (3 HSPs)
chr6 (616-667)||(21168442-21168493)
chr6 (623-667)||(26513967-26514011)
chr6 (626-665)||(9565612-9565651)
[»] chr1 (7 HSPs)
chr1 (616-667)||(6050846-6050897)
chr1 (616-667)||(11908951-11909002)
chr1 (615-668)||(22191626-22191679)
chr1 (623-667)||(26805204-26805248)
chr1 (616-667)||(35541292-35541343)
chr1 (278-327)||(4433967-4434016)
chr1 (278-327)||(25665762-25665811)


Alignment Details
Target: chr2 (Bit Score: 184; Significance: 4e-99; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 364 - 859
Target Start/End: Original strand, 16315363 - 16315864
Alignment:
Q  364 ggggtcggtgtggtgaaggacgatagctagta------accgtgatggtgatggtgcgatgtcggatagttggtttcctgaaaatttacgtcttagtgtt 457  Q
    ||||||||||||||| | ||||||||||||||      |  ||||||||||||||||| | |||  || |||||||| ||||||||||||||| | |||     
T  16315363 ggggtcggtgtggtggaagacgatagctagtatttgagatggtgatggtgatggtgcggtatcgagtatttggtttcttgaaaatttacgtctcattgtc 16315462  T
Q  458 ggaaatagagttagctctctttattggttggataagtgtgtaggtgaggtccctctttgtgttaggtttcgccatttgtttgacttgtca-attataaaa 556  Q
    ||||   ||||||||||||||| ||||||||||| ||| ||  ||||||| ||||||||| ||||||| |||| |||||||||||| ||| |  ||||||    
T  16315463 ggaagcggagttagctctcttttttggttggataggtgggttagtgaggtacctctttgtattaggttccgccgtttgtttgacttatcagaagataaaa 16315562  T
Q  557 tggagactgtggcacaaatgtttgcttggggttgggatgatgatgtccatctcttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggtag 656  Q
    ||| || ||| ||||||||||| |||  ||| |||||||| |  |   |   |||| || |||||||| |||||||||||||||||||||||||||||||    
T  16315563 tggcgattgttgcacaaatgttggctatgggctgggatgagggaggagagg-cttggaactggcgtagtaggttgtgggcgtgggaggaggccttggtag 16315661  T
Q  657 aggagtgtaggaatatgttgttaaatgttttgttgcatgttgatcttgaggattcttggagatggacatctgatctggtcgttggttacattgtaagtgg 756  Q
    ||||||||||||||||| || ||||| || ||||||| ||||||||||||| |||||||||||||||| ||||||||||||| || || | ||| |||||    
T  16315662 aggagtgtaggaatatgctgctaaatattgtgttgcaggttgatcttgagggttcttggagatggacacctgatctggtcgtgggatatactgttagtgg 16315761  T
Q  757 tgcttattgagtgctcacatcagagccgtccaccactatgcatgtcccatcggcaatactttggaggaaggacgttccattgaaggtttccgtgttcgct 856  Q
    ||||||| ||||||||||||| | |||| ||||||| |||||||||||| | ||  |||||||||||||||||||||| |||||||||||| |||| |||    
T  16315762 tgcttatcgagtgctcacatctgggccgcccaccacgatgcatgtcccaacagctttactttggaggaaggacgttccgttgaaggtttccatgtttgct 16315861  T
Q  857 tgg 859  Q
    |||    
T  16315862 tgg 16315864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 359 - 852
Target Start/End: Original strand, 12807740 - 12808232
Alignment:
Q  359 cgggaggggtcggtgtggtgaaggacgatagctagtaaccgtgatggtgatggtgcgatgtcggatagttggtttcctgaaaatttacgtcttagtgttg 458  Q
    ||||||||||||||| |||| |||||||||||||| | ||| ||||||||||||||| || ||| ||||||||||||| | ||||||||||| | |||      
T  12807740 cgggaggggtcggtgcggtggaggacgatagctagcatccgagatggtgatggtgcggtggcgggtagttggtttcctaacaatttacgtctcattgtca 12807839  T
Q  459 gaaatagagttagctctctttattggttggataagtgtgtaggtgaggtccctctttgtgttaggtttcgccatttgtttgacttgtca-attataaaat 557  Q
    |||| | ||| | |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||  |||||||||||| ||| |  |||||||    
T  12807840 gaaacaaagtcatctctcttt-ttggttggataagtgggtaggtgaggtccctcattgtgttaggttttgctgtttgtttgacttatcagaaaataaaat 12807938  T
Q  558 ggagactgtggcacaaatgtttgcttggggttgggatgatgatgtccatctcttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggtaga 657  Q
    || || ||| |||||||||||| ||||||| |||||||| |  |   |   |||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  12807939 ggcgattgttgcacaaatgtttccttggggctgggatgagggaggagagg-cttggaagtggtgtaggaggttgtgggcgtgggaggaggcgttggtaga 12808037  T
Q  658 ggagtgtaggaatatgttgttaaatgttttgttgcatgttgatcttgaggattcttggagatggacatctgatctggtcgttggttacattgtaagtggt 757  Q
    ||||||| ||||||||||| ||| |||| ||||||| |||||| |||||||||||||||||| |||  |||||| |||||| || || |   | ||||||    
T  12808038 ggagtgtgggaatatgttgctaactgttgtgttgcaggttgatattgaggattcttggagattgacgcctgatccggtcgtgggatataccattagtggt 12808137  T
Q  758 gcttattgagtgctcacatcagagccgtccaccactatgcatgtcccatcggcaatactttggaggaaggacgttccattgaaggtttccgtgtt 852  Q
    ||||||  ||||||||||||   || | |||||| |||| ||||||||  |||  ||||||| ||||||||||||||| ||||| ||||||||||    
T  12808138 gcttatcaagtgctcacatctaggctgcccaccattatgaatgtcccaatggctttactttgaaggaaggacgttccactgaagatttccgtgtt 12808232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 359 - 784
Target Start/End: Original strand, 32991072 - 32991496
Alignment:
Q  359 cgggaggggtcggtgtggtgaaggacgatagctagtaaccgtgatggtgatggtgcgatgtcggatagttggtttcctgaaaatttacgtcttagtgttg 458  Q
    |||||| ||||||||||||| |||||||||| ||  |  || ||||| |||||   | ||||   ||||| ||||||||| ||||||||||| | |||||    
T  32991072 cgggagaggtcggtgtggtggaggacgatagttaacattcgagatggagatggcttggtgtcaagtagtttgtttcctgacaatttacgtctcaatgttg 32991171  T
Q  459 gaaatagagttagctctctttattggttggataagtgtgtaggtgaggtccctctttgtgttaggtttcgccatttgtttgacttgtcaatta-taaaat 557  Q
    | ||| | | ||||||||||| ||||||||||| ||| ||||||| ||| ||| |   |||||||||||||| ||||| ||| || ||||  | ||||||    
T  32991172 gtaatggtgctagctctcttttttggttggataggtgggtaggtgtggttcctttgaatgttaggtttcgccgtttgtatgagttatcaaaaaataaaat 32991271  T
Q  558 ggagactgtggcacaaatgtttgcttggggttgggatgatgatgtccatctcttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggtaga 657  Q
    || ||| || || |||| ||| |||||||||| |||||| || |   |   |||| |||||||| ||| | ||||||| |||||||||||| ||||||||    
T  32991272 ggcgaccgttgctcaaacgtt-gcttggggttaggatgaggaaggggagg-cttggaagtggcgaaggggattgtgggtgtgggaggaggcgttggtaga 32991369  T
Q  658 ggagtgtaggaatatgttgttaaatgttttgttgcatgttgatcttgaggattcttggagatggacatctgatctggtcgttggttacattgtaagtggt 757  Q
    |||||||||||||||||||||| ||||| |||||||  ||| | |||||||||| ||||||||| |  |||||  ||| || |  |||| ||| ||||||    
T  32991370 ggagtgtaggaatatgttgttacatgttgtgttgcagattgttgttgaggattcctggagatggtctcctgatacggttgtcgtgtacactgtcagtggt 32991469  T
Q  758 gcttattgagtgctcacatcagagccg 784  Q
    |||||| | ||||||||||||| ||||    
T  32991470 gcttatagtgtgctcacatcagggccg 32991496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 36804205 - 36804155
Alignment:
Q  617 tggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||| | |||||||||||||||||||||| |||| ||||||||||||||    
T  36804205 tggcgtcgaaggttgtgggcgtgggaggaggacttgttagaggagtgtagg 36804155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Original strand, 18844486 - 18844530
Alignment:
Q  623 aggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||    
T  18844486 aggaggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 18489094 - 18489051
Alignment:
Q  624 ggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||||||||||||  || |||||||||||||||    
T  18489094 ggaggttgtgggcgtgggaggaggaattagtagaggagtgtagg 18489051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 665
Target Start/End: Complemental strand, 35488121 - 35488082
Alignment:
Q  626 aggttgtgggcgtgggaggaggccttggtagaggagtgta 665  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  35488121 aggttgtgggcgtgggaggaggctttgctagaggagtgta 35488082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 617 - 667
Target Start/End: Complemental strand, 36804420 - 36804370
Alignment:
Q  617 tggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||| | ||||||| |||||||||||||| |||| ||||||||||||||    
T  36804420 tggcgtcgaaggttgtaggcgtgggaggaggacttgttagaggagtgtagg 36804370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 8066082 - 8066123
Alignment:
Q  626 aggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||||||||||||||||  || ||||||||||||||    
T  8066082 aggttgtgggcgtgggaggaggctatgctagaggagtgtagg 8066123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 12332002 - 12332051
Alignment:
Q  278 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 327  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  12332002 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 12332051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 31071636 - 31071681
Alignment:
Q  609 cttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggt 654  Q
    |||| ||||||||||||||||||||||  |||||||||| ||||||    
T  31071636 cttggaagtggcgtaggaggttgtgggattgggaggaggacttggt 31071681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 493 - 778
Target Start/End: Original strand, 9781257 - 9781542
Alignment:
Q  493 gtgtgtaggtgaggtccctctttgtgttaggtttcgccatttgtttgacttgtcaatta-taaaatggagactgtggcacaaatgtttgcttggggttgg 591  Q
    |||| ||||||||||||||||||||||||  ||||| | ||||||||| |||||||  | |||||||| |||| | ||||||||||||| |||||| |||    
T  9781257 gtgtataggtgaggtccctctttgtgttaaatttcgtcgtttgtttgatttgtcaaaaaataaaatggcgactatagcacaaatgtttgtttggggatgg 9781356  T
Q  592 gatgatgatgtccatctcttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtaggaatatgttgttaaatgttttgttg 691  Q
    ||||| | ||   |    ||||  ||||||||| || |||| ||| ||||||||||  ||| |||| |||||||| |||||| || ||||||||||  ||    
T  9781357 gatgagggtggtgaggctttgag-gtggcgtagaagattgtaggcatgggaggagggtttgttagatgagtgtagcaatatgctgctaaatgttttaatg 9781455  T
Q  692 catgttgatcttgaggattcttggagatggacatctgatctggtcgttggttacattgtaagtggtgcttattgagtgctcacatca 778  Q
    || ||||||  |||||| || ||||| |||| | |||||| | |||| || |||| ||| |||||||||||| ||||||||||||||    
T  9781456 caggttgatactgaggactcctggagttggatacctgatccgatcgtgggatacactgtcagtggtgcttatcgagtgctcacatca 9781542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 37811426 - 37811377
Alignment:
Q  233 cttttgggaagatggctatggcggaacaccaaccagctacgtttcctttt 282  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  37811426 cttttggaaagatggctatggcggaaaaccaaccagctacgtttcctttt 37811377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 32266856 - 32266805
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  32266856 gtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagg 32266805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 7924680 - 7924629
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  7924680 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 7924629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 628 - 667
Target Start/End: Complemental strand, 12134610 - 12134571
Alignment:
Q  628 gttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagg 12134571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 13396682 - 13396631
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  13396682 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 13396631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 41665215 - 41665266
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  41665215 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 41665266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 172397 - 172346
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| |||||||||   ||||||||||||||||||    
T  172397 gtggcgtaggcggttgtgggcctgggaggagaagttggtagaggagtgtagg 172346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 8300097 - 8300046
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||| || |||||||||| ||||||||||  ||||||||||||||||||    
T  8300097 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 8300046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 712 - 858
Target Start/End: Complemental strand, 7516882 - 7516736
Alignment:
Q  712 ttggagatggacatctgatctggtcgttggttacattgtaagtggtgcttattgagtgctcacatcagagccgtccaccactatgcatgtcccatcggca 811  Q
    ||||||||||||| ||||||  ||||| || || | ||  |||||||||||||||||| |||  || | |||| |||||||||||||| ||||| |  |     
T  7516882 ttggagatggacacctgatccagtcgtgggatatactgccagtggtgcttattgagtgatcatgtcggggccgcccaccactatgcatttcccaacaact 7516783  T
Q  812 atactttggaggaaggacgttccattgaaggtttccgtgttcgcttg 858  Q
     ||||||||||||||||||||||||||||||||| |||||| |||||    
T  7516782 ttactttggaggaaggacgttccattgaaggttttcgtgtttgcttg 7516736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 17027 - 17070
Alignment:
Q  233 cttttgggaagatggctatggcggaacaccaaccagctacgttt 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17027 cttttgggaagatggctatggcggaacaccaaccagctacgttt 17070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 2364571 - 2364520
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  2364571 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 2364520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 7313070 - 7313019
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  7313070 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 7313019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 10323417 - 10323468
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  10323417 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 10323468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 620 - 667
Target Start/End: Original strand, 19920079 - 19920126
Alignment:
Q  620 cgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  19920079 cgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 19920126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 34332661 - 34332712
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  34332661 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 34332712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 668
Target Start/End: Complemental strand, 9510041 - 9509996
Alignment:
Q  623 aggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    |||||||||||||| ||||||||||  ||||||| |||||||||||    
T  9510041 aggaggttgtgggcatgggaggaggagttggtagcggagtgtagga 9509996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 668
Target Start/End: Complemental strand, 9518016 - 9517971
Alignment:
Q  623 aggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    |||||||||||||| ||||||||||  ||||||| |||||||||||    
T  9518016 aggaggttgtgggcatgggaggaggagttggtagcggagtgtagga 9517971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Original strand, 18368811 - 18368852
Alignment:
Q  626 aggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||||| ||| ||||||||||||||    
T  18368811 aggttgtgggtgtgggaggaggctttgctagaggagtgtagg 18368852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 668
Target Start/End: Complemental strand, 44888199 - 44888146
Alignment:
Q  615 agtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    ||||||||||| |||||||||| ||||||||||  ||| ||| |||||||||||    
T  44888199 agtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagga 44888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 609 - 672
Target Start/End: Original strand, 23878391 - 23878454
Alignment:
Q  609 cttgaaagtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtaggaatat 672  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||    
T  23878391 cttgaaagtggcgtaggaggttgtgggcgtgggaggaggatttggtagtggagtggaggaatat 23878454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 23238678 - 23238627
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||||||||||||||  |||||||||  ||||||||||||||||||    
T  23238678 gtggcgtaggaggttgtgggccagggaggaggagttggtagaggagtgtagg 23238627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 27117007 - 27117058
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  27117007 gtggcgtaggcggttgtgggcctgggaggaggggttggtagaggagtgtagg 27117058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 30732160 - 30732211
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  30732160 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 30732211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 42514014 - 42513963
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  42514014 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 42513963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 12825493 - 12825442
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||| ||||  ||||||||||||||||||    
T  12825493 gtggcgtaggcggttgtgggcttgggatgaggagttggtagaggagtgtagg 12825442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 9e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 42060268 - 42060317
Alignment:
Q  233 cttttgggaagatggctatggcggaacaccaaccagctacgtttcctttt 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42060268 cttttgggaagatggctatggcggaacaccaaccagctatgtttcctttt 42060317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 614 - 700
Target Start/End: Original strand, 35324209 - 35324295
Alignment:
Q  614 aagtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtaggaatatgttgttaaatgttttgttgcatgttgat 700  Q
    |||||||||||||| |||||||| ||||||||||  ||||||| | |||||| ||||||||||| | || |||| ||||| ||||||    
T  35324209 aagtggcgtaggagattgtgggcttgggaggaggatttggtagtgaagtgtaagaatatgttgtcagatattttattgcaggttgat 35324295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 23642437 - 23642488
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  23642437 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 23642488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 615 - 667
Target Start/End: Complemental strand, 15740516 - 15740464
Alignment:
Q  615 agtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||| |||| |||||||||| ||||||||||  ||||||||||||||||||    
T  15740516 agtggcataggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 15740464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 42059628 - 42059568
Alignment:
Q  278 cttttaatcacaaccatctaattaattcattggcctctatttcatcctctcatttgaaatg 338  Q
    ||||||||||||  |||||||||||| |||||||| |||||| ||| ||||| ||||||||    
T  42059628 cttttaatcacattcatctaattaatccattggccactattttatcatctcacttgaaatg 42059568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 4640526 - 4640577
Alignment:
Q  617 tggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    |||||| | ||||||||||| |||||||||| |||| |||||||||||||||    
T  4640526 tggcgtcgaaggttgtgggcttgggaggaggacttgttagaggagtgtagga 4640577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 19755561 - 19755510
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| | ||||||||  ||||||||||||||||||    
T  19755561 gtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagg 19755510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 19784245 - 19784296
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| | ||||||||  ||||||||||||||||||    
T  19784245 gtggcgtaggcggttgtgggcttaggaggaggagttggtagaggagtgtagg 19784296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 47419098 - 47419047
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||   |||||||||||||||||    
T  47419098 gtggcgtaggcggttgtgggcttgggaggaggaggtggtagaggagtgtagg 47419047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 3546 - 3495
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||||||||||    
T  3546 gtggcgtaggaggttgtgggcctgggaggaggagttggtagaggagtgtagg 3495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 752 - 860
Target Start/End: Original strand, 43004031 - 43004139
Alignment:
Q  752 agtggtgcttattgagtgctcacatcagagccgtccaccactatgcatgtcccatcggcaatactttggaggaaggacgttccattgaaggtttccgtgt 851  Q
    |||||||||||| || ||||  |||||| | || |||||||||||||||| ||| || |  ||||||||||||||||||||| | | ||||| ||||| |    
T  43004031 agtggtgcttatcgaatgcttgcatcaggggcgcccaccactatgcatgttccaacgactttactttggaggaaggacgttctactaaaggtctccgtct 43004130  T
Q  852 tcgcttggc 860  Q
    | |||||||    
T  43004131 ttgcttggc 43004139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 4937974 - 4938025
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  4937974 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 4938025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 11277098 - 11277149
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  11277098 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 11277149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 667
Target Start/End: Complemental strand, 11339033 - 11338990
Alignment:
Q  624 ggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||||||||||||   |||||||||||||||||    
T  11339033 ggaggttgtgggcgtgggaggaggaaatggtagaggagtgtagg 11338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 22819564 - 22819615
Alignment:
Q  617 tggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    |||||||||||||||||||| ||||||||||  ||| ||| |||||||||||    
T  22819564 tggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagga 22819615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 29968268 - 29968217
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||||||| ||||| || |||||||  ||||||||||||||||||    
T  29968268 gtggcgtaggaggttatgggcttgagaggaggaattggtagaggagtgtagg 29968217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 616 - 666
Target Start/End: Complemental strand, 37919838 - 37919788
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtag 666  Q
    |||||||||| |||||||||| |||||||||   |||||||||||||||||    
T  37919838 gtggcgtaggcggttgtgggcttgggaggagaagttggtagaggagtgtag 37919788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 626 - 667
Target Start/End: Complemental strand, 18671454 - 18671413
Alignment:
Q  626 aggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||    
T  18671454 aggttgtgggcatgggaggaggctttgttagaggagtgtagg 18671413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 614 - 667
Target Start/End: Original strand, 28173820 - 28173873
Alignment:
Q  614 aagtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||| | ||||| |||||||||||||||||||  ||||||| ||||||||||    
T  28173820 aagtggaggaggagattgtgggcgtgggaggaggagttggtagcggagtgtagg 28173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 105689 - 105740
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  105689 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 105740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 21168493 - 21168442
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  21168493 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 21168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 26514011 - 26513967
Alignment:
Q  623 aggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||    
T  26514011 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 665
Target Start/End: Complemental strand, 9565651 - 9565612
Alignment:
Q  626 aggttgtgggcgtgggaggaggccttggtagaggagtgta 665  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  9565651 aggttgtgggcgtgggaggaggctttgctagaggagtgta 9565612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 6050897 - 6050846
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  6050897 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 6050846  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 667
Target Start/End: Original strand, 11908951 - 11909002
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||||||||    
T  11908951 gtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 11909002  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 615 - 668
Target Start/End: Original strand, 22191626 - 22191679
Alignment:
Q  615 agtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagga 668  Q
    ||||||||||| |||||||||| ||||||||||  ||||||| |||||||||||    
T  22191626 agtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagga 22191679  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 623 - 667
Target Start/End: Complemental strand, 26805248 - 26805204
Alignment:
Q  623 aggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||| ||||||||||||||||||| | |||||||||||||||||    
T  26805248 aggagattgtgggcgtgggaggaggacatggtagaggagtgtagg 26805204  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 667
Target Start/End: Complemental strand, 35541343 - 35541292
Alignment:
Q  616 gtggcgtaggaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 667  Q
    ||||||| || |||||||||| ||||||||||  ||||||||||||||||||    
T  35541343 gtggcgtcggcggttgtgggcttgggaggaggagttggtagaggagtgtagg 35541292  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 4434016 - 4433967
Alignment:
Q  278 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 327  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  4434016 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 4433967  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 25665811 - 25665762
Alignment:
Q  278 cttttaatcacaaccatctaattaattcattggcctctatttcatcctct 327  Q
    |||||||||||| ||||||||||||| || ||||| || |||||||||||    
T  25665811 cttttaatcacagccatctaattaatccaatggccactgtttcatcctct 25665762  T

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