View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10569_3 (Length: 590)
Name: NF10569_3
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10569_3 |
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Alignment Details
Target: chr4 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 30 - 572
Target Start/End: Complemental strand, 164154 - 163606
Alignment:
| Q |
30 |
tttttatggtatcatgagcttttgcataacaacgaacttgatccatattttttgaacactctcagccatgtctgttgaatctctatccactactgatatt |
129 |
Q |
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| T |
164154 |
tttttatggtatcatgagcttttgcataacaacgaacttgatccatattttttgaacactctcagccatgtctgttgaatctctatccactactgatatt |
164055 |
T |
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| Q |
130 |
cttgtcaataatactcaattggttgtttctttcaacaaccatgcatctgccaaactaagtgtaacaaattatccagcatgcaaagttcagctcaaagcat |
229 |
Q |
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| T |
164054 |
cttgtcaataatactcaattggttgtttctttcaacaaccatgcatctgccaaactaagtgtaacaaattatccagcatgcaaagttcagctcaaagcat |
163955 |
T |
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| Q |
230 |
tactcattgcatatgaccttgttggctatgttgatggtatcaaaacatgtacaatttctaatcatcatgattacaacttctaaagacgtcgtgataatct |
329 |
Q |
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| T |
163954 |
tactcattgcatatgaccttgttggctatgttgatggtatcaaaacatgtacaatttctaatcatcatgattacaacttctaaagacgtcgtgataatct |
163855 |
T |
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| Q |
330 |
tatccttcatgctatcatttccaaagaaccacaatatagttggctgcaaatagctttttcgcaacaaatgtaatccatatggctcc------acagacaa |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
163854 |
tatccttcatgctatcatttccaaagaaccacaatatagttggctgcaaatagctttttcgcaacaaatgtaatccatatggctccacagtcacagacaa |
163755 |
T |
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| Q |
424 |
ctatgtacaaagcacgccttatggccaaaggctttactcaatgtgtaagagttcattttaatgaaacatttggttttaaaaacatgagaaatcctcatta |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
163754 |
ctatgtacaaagcacgccttatggccaaaggctttactcaatgtgtaagagttccttttaatgaaacatttggttttaaaaacatgagaaatcctcatta |
163655 |
T |
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| Q |
524 |
ctttcttggagttgaacttataccaacatcaaatggtctgatgatgtcc |
572 |
Q |
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|||||||||||||||||||||||||| |||||||||||| | |||||| |
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| T |
163654 |
ctttcttggagttgaacttataccaatgtcaaatggtctgtttatgtcc |
163606 |
T |
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