View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10569_6 (Length: 477)

Name: NF10569_6
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10569_6
NF10569_6
[»] chr1 (15 HSPs)
chr1 (1-419)||(6373339-6373759)
chr1 (216-419)||(6422154-6422361)
chr1 (216-419)||(6382842-6383053)
chr1 (250-419)||(6361142-6361311)
chr1 (216-413)||(6368646-6368858)
chr1 (273-419)||(6337259-6337406)
chr1 (273-383)||(6405020-6405130)
chr1 (1-167)||(6421564-6421723)
chr1 (273-375)||(6400399-6400501)
chr1 (273-329)||(6416449-6416505)
chr1 (418-464)||(6374576-6374622)
chr1 (273-382)||(6392005-6392114)
chr1 (275-383)||(6350327-6350435)
chr1 (1-52)||(6368082-6368133)
chr1 (1-64)||(6381204-6381267)
[»] chr3 (2 HSPs)
chr3 (293-414)||(5336024-5336146)
chr3 (216-266)||(5335974-5336024)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 6373339 - 6373759
Alignment:
Q  1 aaattggtataaccaatcacttttgttttatcatttgatttattacttcaatcaaaaatcattttgaagttcatatatactgtataggcttataannnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  6373339 aaattggtataaccaatcacttttgttttatcatttgatttattacttcaatcaaaaatcattttgaagttcatatatactgtataggcttataatttta 6373438  T
Q  101 nnnnnn-atatcacttgttgtttttacttaaaaatgacatactttctgatagggccttaactttagcataaattcttatatttatgccagaacctatccn 199  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6373439 tttttttatatcacttgttgtttttacttaaaaatgacatactttctgatagggccttaactttagcataaattcttatatttatgccagaacctatcct 6373538  T
Q  200 nnnnnnn-atnnnnnnnctcatgattgaattgttcaattccacagaggcagcactgtcaaagtcatcaagaaaggatgagaaaaagatagcacaatcagt 298  Q
            |        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6373539 ttttttttaaaaaaaaactcatgattgaattgttcaattccacagaggcagcactgtcaaagtcatcaagaaaggatgagaaaaagatagcacaatcagt 6373638  T
Q  299 tacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgttcccttttttattcttaatttacg 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  6373639 tacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcatgtattctggtgtgttgttcccttttttatttttaatttacg 6373738  T
Q  399 tcccaaataatgttgttttat 419  Q
    |||||||||||||||||||||    
T  6373739 tcccaaataatgttgttttat 6373759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 216 - 419
Target Start/End: Original strand, 6422154 - 6422361
Alignment:
Q  216 ctcatgattgaattgttcaattccacagaggcagcactgtcaaagtcatc---aagaaaggatgagaaaaagatagcacaatcagttacctcctcttttc 312  Q
    |||||||||||||||||||||||||||||||| |||| ||||| || |||   |  |||||||||||||||| |||| || ||| |||||||  ||||||    
T  6422154 ctcatgattgaattgttcaattccacagaggcggcacagtcaaggttatcgtcagcaaaggatgagaaaaagttagcccagtcatttacctcaacttttc 6422253  T
Q  313 catattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgtt-cccttttttattcttaatttacgtcccaaataatgt 411  Q
    ||||||||||||||||||| |||| ||||| ||||| |||| || ||||||||||| | |||| |||||| | ||||||||||||  |||||||||||||    
T  6422254 catattttgttaaaataatcaaaacgttcaatgtcgatggtccacgtattctggtgaggtgttcccctttgtgattcttaatttagctcccaaataatgt 6422353  T
Q  412 tgttttat 419  Q
    ||||||||    
T  6422354 tgttttat 6422361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 216 - 419
Target Start/End: Original strand, 6382842 - 6383053
Alignment:
Q  216 ctcatgattgaattgttcaattccaca--gaggcagcactgtcaaagtcatcaagaaaggatg---agaaaaagatagcacaatcagttacctcctcttt 310  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||| ||||  |  | |||   |||||||||||||  ||||| |||||||||||||    
T  6382842 ctcatgattgaactgttcaattccacacagaggcagcactgtcaaagttatcatcatcgcatgctgagaaaaagatagccgaatcatttacctcctcttt 6382941  T
Q  311 tccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgttccctttttt---attcttaatttacgtcccaaata 407  Q
    ||| |||||||||||||| || |||| ||||| ||||| |||| || ||||||||||| ||| || ||||||||   |||| |||||| | |||||||||    
T  6382942 tccttattttgttaaaatgatcaaaacgttcaatgtcgatggtccacgtattctggtgagttttttccttttttgtaattcataattttcctcccaaata 6383041  T
Q  408 atgttgttttat 419  Q
    ||||||||||||    
T  6383042 atgttgttttat 6383053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 250 - 419
Target Start/End: Original strand, 6361142 - 6361311
Alignment:
Q  250 cactgtcaaagtcatcaagaaaggatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcgg 349  Q
    |||||||||||| ||||  | | | ||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||  |||| ||| |     
T  6361142 cactgtcaaagttatcaccacatgctgagaaagagatagcccaatcatttacctcctcttttccatattttgttaaaataatgaaaacattcaatgttga 6361241  T
Q  350 tggttcaagtattctggtgtgttgttcccttttttattcttaatttacgtcccaaataatgttgttttat 419  Q
      || || ||||||||||| |||||||| ||| | ||||| ||||||| |||||||||||||||||||||    
T  6361242 acgtccacgtattctggtgagttgttccttttgtgattctcaatttacctcccaaataatgttgttttat 6361311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 413
Target Start/End: Original strand, 6368646 - 6368858
Alignment:
Q  216 ctcatgattgaattgttcaattcc--acagaggcagcactgtcaaagtcatcaagaaag------------gatgagaaaaagatagcacaatcagttac 301  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||             |||||| ||||||||| ||||||| || |    
T  6368646 ctcatgattgaattgttcaattccgcacagaggcagcactgtcaaagttatcaagaaaattatcaagaaatgatgaggaaaagatagtacaatcattttc 6368745  T
Q  302 ctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgttccctttt-ttattcttaatttacgtc 400  Q
     |||||| |||||||||||||||||||||| |||| |||   |||| |||||||| || || ||||| ||| ||||||||| | ||||||||||||  ||    
T  6368746 ttcctctgttccatattttgttaaaataatcaaaacgtttcatgtcagtggttcatgtgttatggtgagttcttcccttttgtgattcttaatttatctc 6368845  T
Q  401 ccaaataatgttg 413  Q
    |||||||||||||    
T  6368846 ccaaataatgttg 6368858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 6337259 - 6337406
Alignment:
Q  273 gatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgtt 372  Q
    ||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||  |||| |||| |||||||   || ||||||| |||    
T  6337259 gatgagaaaaagatagcccaatcatttacgtcctcttttccatattttgttaaaataatcaaaaccttcaatgtcagtggttcgtatactctggtgagtt 6337358  T
Q  373 gttccctttt-ttattcttaatttacgtcccaaataatgttgttttat 419  Q
    ||| |||||| | |||  |||||||  |||||||||||| ||||||||    
T  6337359 gtttccttttgtcatttataatttatctcccaaataatgctgttttat 6337406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 273 - 383
Target Start/End: Original strand, 6405020 - 6405130
Alignment:
Q  273 gatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgtt 372  Q
    ||||||||||||||||| |||||| |||| || |||||||||||||||||||||||| | |||||   || ||| ||||||||| ||| ||||||| |||    
T  6405020 gatgagaaaaagatagcccaatcatttacttcttcttttccatattttgttaaaatacttaaaaacggcaatgttggtggttcacgtactctggtgagtt 6405119  T
Q  373 gttcccttttt 383  Q
    |||||||||||    
T  6405120 gttcccttttt 6405130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 6421564 - 6421723
Alignment:
Q  1 aaattggtataaccaatcacttttgttttatcatttgatttattacttcaatcaaaaatcattttgaagttcatatatactgtataggcttataannnnn 100  Q
    ||||| |||||||||| ||||||| |||  ||||||||||||| || |||||||| ||||||||||||||| ||||||| ||||| | ||||| |         
T  6421564 aaatttgtataaccaaccacttttctttggtcatttgatttatgacatcaatcaagaatcattttgaagtttatatataatgtatcgccttattattttg 6421663  T
Q  101 nnnnnnatatcacttgttgtttttacttaaaaatgacatactttctgatagggccttaactttagca 167  Q
          || ||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||    
T  6421664 tt----atgtcacttgt---ttttacttaaaaatgacatactttctgatagggctttaactttagca 6421723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 375
Target Start/End: Original strand, 6400399 - 6400501
Alignment:
Q  273 gatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgtt 372  Q
    |||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| | |||     || ||||||||||||| ||| ||||||| |||    
T  6400399 gatgagaaaaagatagccgaatcatttacctcctcttttccatattttgttaaaatacttaaagctggcaatgtcggtggttcacgtactctggtgagtt 6400498  T
Q  373 gtt 375  Q
    |||    
T  6400499 gtt 6400501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 6416449 - 6416505
Alignment:
Q  273 gatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaata 329  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  6416449 gatgagaaaaagacagcccaatcatttacctcctcttttccatattttgttaaaata 6416505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 6374576 - 6374622
Alignment:
Q  418 atagcatttagtttgttattgttccatccatctacctgctaacgttc 464  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  6374576 atagcatgtagtttgctattgttccatccatctacctgctaacgttc 6374622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 382
Target Start/End: Original strand, 6392005 - 6392114
Alignment:
Q  273 gatgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgtt 372  Q
    ||||||||||||||||| || | | |||||||||||||||||||||||||||  ||||| |||   | || | || |||||||| ||| ||||||| |||    
T  6392005 gatgagaaaaagatagcccacttatttacctcctcttttccatattttgttatgataatgaaatcctgcaatatcagtggttcacgtactctggtgagtt 6392104  T
Q  373 gttccctttt 382  Q
     |||||||||    
T  6392105 cttccctttt 6392114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 383
Target Start/End: Original strand, 6350327 - 6350435
Alignment:
Q  275 tgagaaaaagatagcacaatcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgt 374  Q
    |||| |||||||||| || ||| || ||||||| ||||||||||||||||||||||| |||   |||| |||| |||||||  ||| | | ||| |||||    
T  6350327 tgaggaaaagatagcccagtcattttcctcctcatttccatattttgttaaaataattaaagccttcaatgtcagtggttctcgtactattgtgagttgt 6350426  T
Q  375 tcccttttt 383  Q
    |||||||||    
T  6350427 tcccttttt 6350435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6368082 - 6368133
Alignment:
Q  1 aaattggtataaccaatcacttttgttttatcatttgatttattacttcaat 52  Q
    ||||| ||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  6368082 aaatttgtataaccaatcatttttgttttgtcatttgatttatcacttcaat 6368133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6381204 - 6381267
Alignment:
Q  1 aaattggtataaccaatcacttttgttttatcatttgatttattacttcaatcaaaaatcattt 64  Q
    ||||| |||||||||| ||||||| |||| |||||||||||||  ||||||| || ||||||||    
T  6381204 aaatttgtataaccaaccacttttcttttgtcatttgatttatggcttcaataaagaatcattt 6381267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 5336024 - 5336146
Alignment:
Q  293 atcagttacctcctcttttccatattttgttaaaataataaaaaagttcagtgtcggtggttcaagtattctggtgtgttgttccctttttt-attctta 391  Q
    |||| ||||||||||||||||||||||||||||||| || |||| ||||| ||||| ||||  | ||||||||||| ||| ||||||||||| |||||||    
T  5336024 atcacttacctcctcttttccatattttgttaaaatgatcaaaatgttcaatgtcgatggtcgatgtattctggtgagtttttcccttttttgattctta 5336123  T
Q  392 atttacgtcccaaataatgttgt 414  Q
    | || | ||||||||||||||||    
T  5336124 actttcctcccaaataatgttgt 5336146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 5335974 - 5336024
Alignment:
Q  216 ctcatgattgaattgttcaattccacagaggcagcactgtcaaagtcatca 266  Q
    ||||||| |||| ||||| |||||||||||||||||||| |||||| ||||    
T  5335974 ctcatgagtgaactgttcgattccacagaggcagcactgacaaagttatca 5336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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