View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10569_7 (Length: 459)

Name: NF10569_7
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10569_7
NF10569_7
[»] chr2 (4 HSPs)
chr2 (59-459)||(3099633-3100033)
chr2 (1-38)||(3100031-3100068)
chr2 (27-80)||(27288638-27288691)
chr2 (19-67)||(15780076-15780124)
[»] chr3 (3 HSPs)
chr3 (23-80)||(27792875-27792932)
chr3 (20-81)||(237397-237458)
chr3 (19-80)||(9279336-9279397)
[»] chr7 (2 HSPs)
chr7 (20-81)||(24363610-24363671)
chr7 (19-81)||(44151489-44151551)
[»] chr4 (3 HSPs)
chr4 (19-87)||(49219138-49219206)
chr4 (21-81)||(29263371-29263431)
chr4 (19-79)||(30207582-30207642)
[»] chr1 (5 HSPs)
chr1 (19-81)||(39347976-39348038)
chr1 (19-80)||(35351038-35351099)
chr1 (22-81)||(30257685-30257744)
chr1 (19-81)||(12564883-12564945)
chr1 (23-79)||(45205071-45205127)
[»] chr5 (2 HSPs)
chr5 (19-73)||(17368675-17368729)
chr5 (22-74)||(40205090-40205142)
[»] chr6 (1 HSPs)
chr6 (20-108)||(2034427-2034516)


Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 59 - 459
Target Start/End: Complemental strand, 3100033 - 3099633
Alignment:
Q  59 aaataagctgaaaacaacttatgtagatgtctacgcagtttccataaactaaaaacacatcaattattgtagaagggtgctgtaaaagaaaatgtaagac 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3100033 aaataagctgaaaacaacttatgtagatgtctacgcagtttccataaactaaaaacacatcaattattgtagaagggtgctgtaaaagaaaatgtaagac 3099934  T
Q  159 aatgattaccagccaagataagcgaaagcaacaggcaaaacaagagcctgaaaaccaacaccagcattgaggttatgaaaagtagagtaatgagcatttc 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3099933 aatgattaccagccaagataagcgaaagcaacaggcaaaacaagagcctgaaaaccaacaccagcattgaggttatgaaaagtagagtaatgagcatttc 3099834  T
Q  259 cattccgagactcggtaattggaagccatgcatcttgaggattaagcttagtaagatggccaacatcttccaaataacccttcatgtttataagtaccct 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3099833 cattccgagactcggtaattggaagccatgcatcttgaggattaagcttagtaagatggccaacatcttccaaataacccttcatgtttataagtaccct 3099734  T
Q  359 tttcattggtgtccctataggactcaaaaaccttggtgatataaaagatgttggtgtccatgcatttgatgatttagcttcctttgatccttgtcttggt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3099733 tttcattggtgtccctataggactcaaaaaccttggtgatataaaagatgttggtgtccatgcatttgatgatttagcttcctttgatccttgtcttggt 3099634  T
Q  459 g 459  Q
    |    
T  3099633 g 3099633  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3100068 - 3100031
Alignment:
Q  1 acaaactatagtactatactataagttgttttcataaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3100068 acaaactatagtactatactataagttgttttcataaa 3100031  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 27288638 - 27288691
Alignment:
Q  27 tgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttat 80  Q
    |||||||||||  || | ||||||| |||| |||||||||||||||||||||||    
T  27288638 tgttttcataagttatcatgtagagtttacggaaataagctgaaaacaacttat 27288691  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 15780076 - 15780124
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagct 67  Q
    ||||||||||||||||||| ||| |||| |||| ||| |||||||||||    
T  15780076 ctataagttgttttcataagctatcgtgcagagcttatagaaataagct 15780124  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 27792875 - 27792932
Alignment:
Q  23 aagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttat 80  Q
    ||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||    
T  27792875 aagttgttttcataaactatcatgtagagcttatagaaataagctgaaaacaacttat 27792932  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 237397 - 237458
Alignment:
Q  20 tataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    ||||||||||||||||||  || | | ||||| |||| ||||||||||||||||| ||||||    
T  237397 tataagttgttttcataagttatcctatagagcttacggaaataagctgaaaacagcttatg 237458  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 9279397 - 9279336
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttat 80  Q
    ||||| ||||||||||||||||| | || |||| |||  ||||||||||||||||| |||||    
T  9279397 ctatatgttgttttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttat 9279336  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 24363671 - 24363610
Alignment:
Q  20 tataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    |||||||||||||||||| ||| | || ||||||||  ||||||||||||||||||||||||    
T  24363671 tataagttgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatg 24363610  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 44151551 - 44151489
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    ||||||||||||||||||||||| | || | || |||  ||||||||||||||||| ||||||    
T  44151551 ctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatg 44151489  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 49219138 - 49219206
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatgtagatg 87  Q
    ||||||||||||||||||||||| | |  |||| |||  |||||||||||||||||||||||| |||||    
T  49219138 ctataagttgttttcataaactatcttaaagagattatggaaataagctgaaaacaacttatggagatg 49219206  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 29263371 - 29263431
Alignment:
Q  21 ataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    ||||||||||||||||| ||| | || |||| ||   ||||||||||||||||||||||||    
T  29263371 ataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatg 29263431  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 30207642 - 30207582
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaactta 79  Q
    ||||||||||||||||||| ||||| |  |||| |||  ||||||||||||||||| ||||    
T  30207642 ctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagctta 30207582  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 39348038 - 39347976
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    ||||||||||||||||||||||| | || | || |||  ||||||||||||||||||||||||    
T  39348038 ctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaacttatg 39347976  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 35351038 - 35351099
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttat 80  Q
    ||||||||||| ||||||||||| | |  |||| ||||| ||||||||||||||||||||||    
T  35351038 ctataagttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaacttat 35351099  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 30257685 - 30257744
Alignment:
Q  22 taagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    |||||||||||||||||||| | || || | ||| |||||||||||||||||| ||||||    
T  30257685 taagttgttttcataaactatcctggagggcttatagaaataagctgaaaacagcttatg 30257744  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 12564945 - 12564883
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatg 81  Q
    ||||||||||||||||||| ||| | | ||| | |||| ||||||||||||||||| ||||||    
T  12564945 ctataagttgttttcataagctatcttttagtgcttacggaaataagctgaaaacagcttatg 12564883  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 45205071 - 45205127
Alignment:
Q  23 aagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaactta 79  Q
    ||||||||||||||| ||| | ||||||| | |  ||||||||||||||||||||||    
T  45205071 aagttgttttcataagctatcatgtagagttcatggaaataagctgaaaacaactta 45205127  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 17368675 - 17368729
Alignment:
Q  19 ctataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaac 73  Q
    ||||||||||||||||||| ||| | || ||||||||  ||||||||||||||||    
T  17368675 ctataagttgttttcataagctatcttggagaggttatggaaataagctgaaaac 17368729  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 40205142 - 40205090
Alignment:
Q  22 taagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaaca 74  Q
    |||||||||||||||| ||| | || |||| ||| ||||||||||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagctgaaaaca 40205090  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 2034516 - 2034427
Alignment:
Q  20 tataagttgttttcataaactaccgtgtagaggttacagaaataagctgaaaacaacttatgtagatgtc-tacgcagtttccataaact 108  Q
    |||||| | ||||||||| ||| | ||||||| |||  ||||||||||||||||| |||||| | ||||| || || |||||||||||||    
T  2034516 tataagcttttttcataagctaacatgtagagcttaatgaaataagctgaaaacagcttatggaaatgtcataagctgtttccataaact 2034427  T

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