View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10569_low_1 (Length: 377)

Name: NF10569_low_1
Description: NF10569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10569_low_1
NF10569_low_1
[»] chr6 (17 HSPs)
chr6 (21-215)||(5398291-5398482)
chr6 (112-201)||(5100721-5100810)
chr6 (112-198)||(5135825-5135911)
chr6 (69-199)||(5155843-5155973)
chr6 (126-215)||(5255961-5256050)
chr6 (95-192)||(5439339-5439436)
chr6 (95-216)||(5242326-5242445)
chr6 (81-201)||(5448923-5449043)
chr6 (132-245)||(5283055-5283172)
chr6 (82-192)||(5352700-5352810)
chr6 (81-201)||(5180635-5180755)
chr6 (112-174)||(5351703-5351765)
chr6 (69-138)||(2939250-2939319)
chr6 (69-124)||(2657055-2657110)
chr6 (21-67)||(5156017-5156063)
chr6 (22-67)||(5372343-5372388)
chr6 (225-273)||(5180590-5180637)
[»] chr3 (4 HSPs)
chr3 (124-199)||(47985223-47985298)
chr3 (124-199)||(47994510-47994585)
chr3 (124-199)||(48003797-48003872)
chr3 (124-199)||(48013082-48013157)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 5398291 - 5398482
Alignment:
Q  21 ttcgagaatgatttcattgcgaaggagacaacagtttatcttgtatatgatttgaaagcaattgcttgtagtaatgatgaaaatgaacgccctgtcaaga 120  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||||||||||||    
T  5398291 ttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgatttgaatgcaattgcttgta---atgatgaaaatgaacgccctgtcaaga 5398387  T
Q  121 gattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatgaaaaatggcaagacaat 215  Q
    |||||||||||||||| || |||||| ||||||||||||| || |||||||||| ||  | ||| |||||||||||||||| |||| || |||||    
T  5398388 gattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaagccgagttgaatgaatcaatgaaagatggtaaaacaat 5398482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 112 - 201
Target Start/End: Complemental strand, 5100810 - 5100721
Alignment:
Q  112 ctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatgaaa 201  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||    
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaa 5100721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 5135911 - 5135825
Alignment:
Q  112 ctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatg 198  Q
    |||||||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||| ||| | |||||||||||||||||    
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatg 5135825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 5155973 - 5155843
Alignment:
Q  69 gatttgaaagcaattgcttgtagtaatgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaa 168  Q
    |||||||| |||||| |||||||||||||||||||||||| | |||||||||||||  || |||||| ||| |||| | |||||| |||||| |||||||    
T  5155973 gatttgaatgcaatttcttgtagtaatgatgaaaatgaactctctgtcaagagattagcttctgaaggggatcccattgatgactgcaatcaaaacagaa 5155874  T
Q  169 agaagagaaatcaagtggaatgaatcaatga 199  Q
    |||||| |   || |||||||||||||||||    
T  5155873 agaagaaaggccaggtggaatgaatcaatga 5155843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 5256050 - 5255961
Alignment:
Q  126 tctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatgaaaaatggcaagacaat 215  Q
    |||||||||||||| |||||| |||| |||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||| ||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaaaatggcacgacaat 5255961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 5439339 - 5439436
Alignment:
Q  95 tgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaa 192  Q
    ||||||||||||||||||||  |||||||||||||||| |||||| |||||| ||||||||||||  ||||||||||||| ||||| | |||||||||    
T  5439339 tgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaa 5439436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 5242445 - 5242326
Alignment:
Q  95 tgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatc 194  Q
    ||||||| |||||||| |||||||||||||||||||||||||||| ||  || ||||||||||||| ||| |||  |||| ||||| ||||||||| |||    
T  5242445 tgatgaagatgaacgctctgtcaagagattctctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatcgagtggaatgtatc 5242348  T
Q  195 aatgaaaaatggcaagacaata 216  Q
    ||||||| |||| || ||||||    
T  5242347 aatgaaagatggtaaaacaata 5242326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 5448923 - 5449043
Alignment:
Q  81 attgcttgtagtaatgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatc 180  Q
    |||||||||||   ||||||||||||| || || | ||||  |||||||||||||| || ||| |  ||||||||||||| ||||||||||||| |||||    
T  5448923 attgcttgtagaggtgatgaaaatgaatgctctctaaagaacttctctactgaagacgatcccgcagatgacttcaatcagaacagaaagaagaaaaatc 5449022  T
Q  181 aagtggaatgaatcaatgaaa 201  Q
    |||| ||||||||||||||||    
T  5449023 aagtagaatgaatcaatgaaa 5449043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 245
Target Start/End: Complemental strand, 5283172 - 5283055
Alignment:
Q  132 gaagaggaacccacta---atgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatgaaaaatggcaagacaataattttg-taaaa 227  Q
    ||||| ||||||||||   ||||||||| ||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||||||  ||  |  ||||    
T  5283172 gaagaagaacccactacttatgacttcactcagaacagaaagaagaaaaaccgagtggaatgaatcaatgaaaaatggcaagacaatggttgggcaaaaa 5283073  T
Q  228 ccaattcttatggtgcct 245  Q
    ||||||||||||||||||    
T  5283072 ccaattcttatggtgcct 5283055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 5352810 - 5352700
Alignment:
Q  82 ttgcttgtagtaatgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatca 181  Q
    |||||| |||| ||||||||||||| | |||||||||||||||||||| ||||||||| | |||| | ||  ||||||| ||||||||||||| |||||     
T  5352810 ttgcttctagtgatgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcg 5352711  T
Q  182 agtggaatgaa 192  Q
    | |||||||||    
T  5352710 aatggaatgaa 5352700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 81 - 201
Target Start/End: Complemental strand, 5180755 - 5180635
Alignment:
Q  81 attgcttgtagtaatgatgaaaatgaacgccctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatc 180  Q
    |||||||||||   |||||||| |||| || |||| |||||||||||| ||||||| |||| | |  | ||||||||||| ||||||||||||| ||| |    
T  5180755 attgcttgtagaggtgatgaaactgaatgctctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaacc 5180656  T
Q  181 aagtggaatgaatcaatgaaa 201  Q
     ||||||||||||||||||||    
T  5180655 gagtggaatgaatcaatgaaa 5180635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 5351703 - 5351765
Alignment:
Q  112 ctgtcaagagattctctactgaagaggaacccactaatgacttcaatcacaacagaaagaaga 174  Q
    |||||||||||||||||||||||||||| |||||| ||||| | ||||| |||||||||||||    
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaaga 5351765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 2939250 - 2939319
Alignment:
Q  69 gatttgaaagcaattgcttgtagtaatgatgaaaatgaacgccctgtcaagagattctctactgaagagg 138  Q
    |||||||| |||||| |||||||||| ||||||||||||| | || |||||||||| ||| |||||||||    
T  2939250 gatttgaatgcaatttcttgtagtaacgatgaaaatgaactctctatcaagagattatcttctgaagagg 2939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 2657110 - 2657055
Alignment:
Q  69 gatttgaaagcaattgcttgtagtaatgatgaaaatgaacgccctgtcaagagatt 124  Q
    |||||||| |||||| |||||||||||||||||||||||  | || ||||||||||    
T  2657110 gatttgaatgcaatttcttgtagtaatgatgaaaatgaagtctctatcaagagatt 2657055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 5156063 - 5156017
Alignment:
Q  21 ttcgagaatgatttcattgcgaaggagacaacagtttatcttgtata 67  Q
    ||||||| | ||||||||| |||| ||||||||||||||||||||||    
T  5156063 ttcgagattaatttcattgtgaagaagacaacagtttatcttgtata 5156017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 5372343 - 5372388
Alignment:
Q  22 tcgagaatgatttcattgcgaaggagacaacagtttatcttgtata 67  Q
    |||||||||||||||||| |||| |||||||| ||||||| |||||    
T  5372343 tcgagaatgatttcattgtgaagaagacaacaatttatctcgtata 5372388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 5180637 - 5180590
Alignment:
Q  225 aaaccaattcttatggtgcctgcgtaccttttgtattggcaacaattgt 273  Q
    ||||||||||||||||||||||  |||| ||||||| ||||||||||||    
T  5180637 aaaccaattcttatggtgcctgtatacc-tttgtataggcaacaattgt 5180590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 47985298 - 47985223
Alignment:
Q  124 tctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatga 199  Q
    ||||||||||||||||  |||   ||||||||||||| |  |||||||||| ||| | ||||||||||||||||||    
T  47985298 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 47994585 - 47994510
Alignment:
Q  124 tctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatga 199  Q
    ||||||||||||||||  |||   ||||||||||||| |  |||||||||| ||| | ||||||||||||||||||    
T  47994585 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 47994510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 48003872 - 48003797
Alignment:
Q  124 tctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatga 199  Q
    ||||||||||||||||  |||   ||||||||||||| |  |||||||||| ||| | ||||||||||||||||||    
T  48003872 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 48013157 - 48013082
Alignment:
Q  124 tctctactgaagaggaacccactaatgacttcaatcacaacagaaagaagagaaatcaagtggaatgaatcaatga 199  Q
    ||||||||||||||||  |||   ||||||||||||| |  |||||||||| ||| | ||||||||||||||||||    
T  48013157 tctctactgaagaggagtccatcgatgacttcaatcagactagaaagaagaaaaaacgagtggaatgaatcaatga 48013082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University