View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_2 (Length: 877)
Name: NF1056_high_2
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 49 - 529
Target Start/End: Original strand, 32535527 - 32536007
Alignment:
| Q |
49 |
cattgcaatcttatacattgcttcgatttt-gactccaggtaacaaatttaatagtttgatatagatcatttcagttttacctttgggtttatatatatt |
147 |
Q |
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|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32535527 |
cattgcaatcttatgcattgcttcgatttttgactccaggtaacaaatttaatagtttgatatagatcatttcagttttacctttgggtttatatatatt |
32535626 |
T |
|
| Q |
148 |
ttgagaaaaatatgaattttattcttgaatgttttaacaattccattttttaaaaagtgatcaaattttgaatgggttaatcatattcaaaacttcttat |
247 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32535627 |
ttgagaaaa-tatgaattttattcttgaatgttttaacaattccattttttaaaaagtgatcaaattttggatgggttaatcatattcaaaacttcttat |
32535725 |
T |
|
| Q |
248 |
aaccctctctaatctattgattgtgggtggagcaacaaatgaagacaaattcactcccaagcttgtgcattgttttggtggcacgacgtgtccaactggt |
347 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32535726 |
aaccctctctaatctattgattgtaggtggagcaacaaatgaagacaaattcactcacaagcttgtgcattgttttggtggcacgacgtgtccaactggt |
32535825 |
T |
|
| Q |
348 |
tgcgtactgaagtgtgcaggtctaggtctaggtcaaccaggccattgtcaaggagaccaatgttgttgttctgcaatataacactatagtttatgtacac |
447 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32535826 |
tgcatactgaagtgtgcaggtctaggtctaggtcaaccaggccattgtcaaggagaccaatgttgttgtgctgcaatataacactatagtttatgtacac |
32535925 |
T |
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| Q |
448 |
actatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattattggtgttctattatatg |
529 |
Q |
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| T |
32535926 |
actatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattattggtgttcaattatatg |
32536007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 530 - 870
Target Start/End: Original strand, 32536034 - 32536375
Alignment:
| Q |
530 |
tatcactgctactttgagaaatctgcatgggtg--attgtgtttgttgtatgctaagtgtttataattcgactttatcatcacgtaggtagaaaaattat |
627 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32536034 |
tatcactgctactttgagaaatctgcatgcgtgtgattgtgtttgttgtatgctaagggtttataattcgactttatcatcacgtaggtcgaaaaattat |
32536133 |
T |
|
| Q |
628 |
tttatgaattatgaatatgtagggatggatcaaagaattttgattaatggagacgaaattatatactataaatgtttttgtataaaagatattattgaca |
727 |
Q |
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| T |
32536134 |
tttatgaattatgaat-tgtagggatggatcaaagaattttgattaatggagacgaaattatatactataaatgtttttgtataaaagatattattgaca |
32536232 |
T |
|
| Q |
728 |
tgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactcaaactt |
827 |
Q |
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| T |
32536233 |
tgttataatcaaaatattgttaagtcgcaaatagacaattcaattgaggaggtgagtgacaatgaaagagttctaactagaatatttgagactcaaactt |
32536332 |
T |
|
| Q |
828 |
tgaagacaaacacaatctactaagttgttaaatatattattcg |
870 |
Q |
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| T |
32536333 |
tgaagacaaacacaatctactaagttgttaaatatgttattcg |
32536375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 235 - 512
Target Start/End: Complemental strand, 31447662 - 31447372
Alignment:
| Q |
235 |
caaaacttcttataaccctctctaatctattgattgtgggtggagcaacaaatgaagacaaattca------------ctcccaagcttgtgcattgttt |
322 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| ||||||||| |
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| T |
31447662 |
caaaatttcttataaccctctctaatctattgattgtaggtggagcaacaaatgaagacaaactcattcccggtccgactcccaagcttgcgcattgttt |
31447563 |
T |
|
| Q |
323 |
tggtggcacgacgtgtccaactggttgcgtactgaagtgtgcaggtctaggtctaggtcaaccaggccattgtcaaggagaccaatgttgttgttctgca |
422 |
Q |
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| |||| | |||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
31447562 |
tcgtggtgtgtcgtgtccagttggttgcatacagaagtgtgcaggtctaggtctaggtcaaccaggccattgtcaaggaaaccaatgttgttgtgctgca |
31447463 |
T |
|
| Q |
423 |
atataacactatagtttatg--tacacactatttttatggcttccatcaataaaacttagaaataaatagtaattgaaaaccgtatcattat |
512 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||||||||||| | | ||||||||||||| |||| ||||||| |||| |||| |
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| T |
31447462 |
atataacactatagtttatggcttc-cactatttttatggcttccatcaatgatagttagaaataaatactaatggaaaaccatatctttat |
31447372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 530 - 646
Target Start/End: Complemental strand, 31447331 - 31447215
Alignment:
| Q |
530 |
tatcactgctactttgagaaatctgcatgggtgattgtgtttgttgtatgctaagtgtttataattcgactttatcatcacgtaggtagaaaaattattt |
629 |
Q |
| |
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||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31447331 |
tatcactgctagtttgagaaatatacatgggtgattgtgtttgttgtatgctaagtgtttataattcgactttatcgtcacgtaggtagaaaaattattt |
31447232 |
T |
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| Q |
630 |
tatgaattatgaatatg |
646 |
Q |
| |
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|||| |||||||||||| |
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| T |
31447231 |
tatggattatgaatatg |
31447215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 31448073 - 31447995
Alignment:
| Q |
49 |
cattgcaatcttatacattgcttcgattttgactccaggtaacaaatttaatagtttgatatagatcatttcagtttta |
127 |
Q |
| |
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||||||||| |||| | ||||||| ||||||||||||||||||||||||| ||||||||| || || |||||| ||||| |
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| T |
31448073 |
cattgcaatattatgcgttgcttccattttgactccaggtaacaaatttactagtttgatctatataatttcaatttta |
31447995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 31447742 - 31447696
Alignment:
| Q |
194 |
tttttaaaaagtgatcaaattttgaatgggttaatcatattcaaaact |
241 |
Q |
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| T |
31447742 |
tttttaacaagtgatcaa-ttttgaatgggttaatcatattcaaaact |
31447696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 31447957 - 31447889
Alignment:
| Q |
129 |
ctttgggtttat--atatattttgagaaaaatatgaattttattcttgaatgttttaacaattccatttt |
196 |
Q |
| |
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|||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||||||||||||| |||| |
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| T |
31447957 |
ctttgggtttatgtatatatattgagaaaa-tatgaaatttgttcttgaatgttttaacaattccttttt |
31447889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 672 - 825
Target Start/End: Complemental strand, 7467048 - 7466892
Alignment:
| Q |
672 |
taatggagacgaaattata---tactataaatgtttttgtataaaagatattattgacatgttataatcaaaatattgttaagtcgcaaatagacaattc |
768 |
Q |
| |
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|||||| |||||||||||| || |||||||||||||||||||||| || || | ||| |||||| | ||| |||||| |||||||||||||||| |
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| T |
7467048 |
taatggggacgaaattatagtatattataaatgtttttgtataaaaggtacaatatagatgctataat--atttatcgttaaggcgcaaatagacaattc |
7466951 |
T |
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| Q |
769 |
aattgaggaggtgagtgacaatgaaa--gagttctaactagaatatttgagactcaaac |
825 |
Q |
| |
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|||| ||||| | || | ||| ||| ||||||||||||||||||||||||||||||| |
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| T |
7466950 |
aattaaggagttaagaaataataaaaaagagttctaactagaatatttgagactcaaac |
7466892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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