View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_20 (Length: 443)
Name: NF1056_high_20
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 82 - 347
Target Start/End: Complemental strand, 37973412 - 37973154
Alignment:
| Q |
82 |
gagatgaatacactaacatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcacacttt |
181 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37973412 |
gagaagaatacactaacatgaaaaacatgcatgtatatagagttgttggctagggatggcaatttttccatgtgcaacactcctatttgaatcacacttt |
37973313 |
T |
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| Q |
182 |
cagtgctccccttaatttaaacacgtgaaggattttttaactccaaaatcctctcttagaaatttgaaccttctagccttctaatgatataacgatatga |
281 |
Q |
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| T |
37973312 |
cagtgctccccttaatttaaacacgtgaaggattttttaactccaaaatcctctcttagaaatttgaaccttctagccttctaatg--------atatga |
37973221 |
T |
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| Q |
282 |
tatgatgatttggttggcaaacaagttgcttctctaacttgcttttt-actttaagaatcctttgtt |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
37973220 |
tatgatgatttggttggcaaacaagttgcttctctaacttgctttttaattttaagaatcctttgtt |
37973154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 256
Target Start/End: Complemental strand, 37952597 - 37952483
Alignment:
| Q |
147 |
ttccatgtgcaacactcctatttgaatcaca----ctttcagtgctccccttaatttaaacacgtgaaggattttttaactccaaaa-tcctctcttaga |
241 |
Q |
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|||||| | |||||||||||||||||||| | |||||| |||||||||||||||||||| ||||||||||||||| ||||||| | |||||| | | |
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| T |
37952597 |
ttccatatacaacactcctatttgaatcatatatactttcaacgctccccttaatttaaacacatgaaggattttttaagtccaaaagttctctctaaaa |
37952498 |
T |
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| Q |
242 |
aatttgaaccttcta |
256 |
Q |
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|||||||| |||||| |
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| T |
37952497 |
aatttgaatcttcta |
37952483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 262
Target Start/End: Complemental strand, 37951982 - 37951870
Alignment:
| Q |
148 |
tccatgtgcaacactcctatttgaatcacactttcagtgctccccttaatttaaacacgtgaaggattttttaactccaaaat--cctctcttagaaatt |
245 |
Q |
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||||||| || ||||||| ||||||||||||||||| || |||||||| |||||||| ||||||| |||| ||||||||| |||||||||||||| |
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| T |
37951982 |
tccatgtacatcactcctgtttgaatcacactttcaacgc-ccccttaacttaaacacctgaagga---tttatctccaaaatactctctcttagaaatt |
37951887 |
T |
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| Q |
246 |
tgaaccttctagccttc |
262 |
Q |
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|||| ||| |||||||| |
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| T |
37951886 |
tgaatcttttagccttc |
37951870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 37951868 - 37951807
Alignment:
| Q |
286 |
atgatttggttggcaaacaagttgcttctctaacttgctttttactttaagaatcctttgtt |
347 |
Q |
| |
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||||||||||||| || |||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
37951868 |
atgatttggttggtaagcaagttgcttctctgacttgctgtcaactttaagaatcctttgtt |
37951807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 37952483 - 37952422
Alignment:
| Q |
286 |
atgatttggttggcaaacaagttgcttctctaacttgctttttactttaagaatcctttgtt |
347 |
Q |
| |
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||||||||||||| | ||||||||||| || ||||||||| ||||| |||||||||||||| |
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| T |
37952483 |
atgatttggttggtatgcaagttgcttccctcacttgctttctacttcaagaatcctttgtt |
37952422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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