View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_22 (Length: 440)
Name: NF1056_high_22
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 371
Target Start/End: Complemental strand, 44605766 - 44605433
Alignment:
| Q |
30 |
gcaatagttaaaatatagctcactaatttatgtaaattatattatatattaattaggaagtttcattgtttgtactaattaaataaatcacatatatatg |
129 |
Q |
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| T |
44605766 |
gcaatagttaaaatatagctcactaatttttgtaaattatattatatatta----ggaagtttcattgtttgtactaa----ataaatcacatatatatg |
44605675 |
T |
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| Q |
130 |
tgcacagggtgaccgtctaatgaggatattatatgtggctgcatttgcagtttcagggtatgcaaacactagtggtagaacttgcaaaccatttaatcca |
229 |
Q |
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| T |
44605674 |
tgcacagggtgaccgtctaatgaggatattatatgtggctgcatttgcagtttcagggtatgcaaacactagtggtagaacttgcaaaccatttaatcca |
44605575 |
T |
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| Q |
230 |
ttattgggtgaaacatatgaggcagattatccagataaaggtgtacgctttatctctgagaaggtataatcgtgtatcatgtaatgttagtccatgacat |
329 |
Q |
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| T |
44605574 |
ttattgggtgaaacatatgaggcagattatccagataaaggtgtacgctttatctctgagaaggtataatcgtgtatcatgtaatgttagtccatgaaat |
44605475 |
T |
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| Q |
330 |
cagaagaaccatcatcaatattttagtccatgcaacaaattg |
371 |
Q |
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| T |
44605474 |
cagaagaaccatcatcaatattttagtccatgcaacacattg |
44605433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 440
Target Start/End: Complemental strand, 44605406 - 44605364
Alignment:
| Q |
398 |
tgagtattcggtccgagggatcaactaatctcaaagactaatt |
440 |
Q |
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| T |
44605406 |
tgagtattcggtccgagggatcaactaatctcaaagactaatt |
44605364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 32886169 - 32886262
Alignment:
| Q |
206 |
agaacttgcaaaccatttaatccattattgggtgaaacatatgaggcagattatccagataaaggtgtacgctttatctctgagaaggtataat |
299 |
Q |
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| T |
32886169 |
agaatttgcaaaccatttaatccattacttggagaaacatacgaggctaactatccagataaaggccttcgctttttctcagagaaggtataat |
32886262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 300
Target Start/End: Original strand, 24481789 - 24481883
Alignment:
| Q |
206 |
agaacttgcaaaccatttaatccattattgggtgaaacatatgaggcagattatccagataaaggtgtacgctttatctctgagaaggtataatc |
300 |
Q |
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| T |
24481789 |
agaaattgtaaaccgtttaatccattactaggggagacatatgaggcggaatttccagataaaggttttcgtttcatctcagagaaggtctaatc |
24481883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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