View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_high_25 (Length: 418)
Name: NF1056_high_25
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 409
Target Start/End: Complemental strand, 36833028 - 36832656
Alignment:
| Q |
30 |
tcctctagctgcatgaaaaatgaattcacaagagtttataggattttcagtatcacgttactagtttagagcatttttgtactaaatttgcttatgaatt |
129 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36833028 |
tcctctagctgcatgaaaaatga--------gagtttataggattttcagtatcacgttactagtttagagcatttttgtactaaatttgcttatgaatt |
36832937 |
T |
|
| Q |
130 |
atgatcaaaccaaagaccttaaatggcaacctt-acctatttggaaattcaaaccaaagctaagtgaaaactacttgtgtggataatttgtatccccgtt |
228 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36832936 |
atgatcaaaccaaagaccttagatggcaacctttacctatatggaaattcaaaccaaagctaaatgaaaactacttgtgtggataatttgtatccccgtt |
36832837 |
T |
|
| Q |
229 |
ccacactccaccaacttagttacatagaaaagtatgtatattaattagttgacgtgtccaaaacatatagtagaatcttactaatggtttttaatgcgtg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36832836 |
ccacactccaccaacttagttacatagaaaagtatgtatattaattagttgacgtgtccaaaacatatagtagaatcttactaatggtttttaatgcgtg |
36832737 |
T |
|
| Q |
329 |
caaacaacatcaagaagcaaaactaataagtcagccattgtcgaaaacgagattcccattattgtaagtattcatattctt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36832736 |
caaacaacatcaagaagcaaaactaataagtcagccattgtcgaaaacgagattcccattattgtaagtattcatattctt |
36832656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University