View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_32 (Length: 384)
Name: NF1056_high_32
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 373
Target Start/End: Complemental strand, 19277053 - 19276707
Alignment:
| Q |
30 |
gtcttggtttaggagacaaaaagagagagaga--ttaactaaacaacagtgacaaacaaataatagtactagtagttgtttatattaaattaacaaaacc |
127 |
Q |
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| T |
19277053 |
gtcttggtttaggagacaaaaagagagagagagattaactaaacaacagtgacaaacaaataatagtactagtagttgtttacattaaattaacaaaacc |
19276954 |
T |
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| Q |
128 |
ttttgttgaggtgatttggcttttgattgattctgtgttgatgtgcctgttcttaatccatcatcagttgctgtctcctgttgaaaagcatgattatgat |
227 |
Q |
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| T |
19276953 |
ttttgttgaggtgatttggcttttgattgattctgtgttgatgtgcctgttcttaatccatcatcagttgctgtctcctgttgaaaagcatgattatgat |
19276854 |
T |
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| Q |
228 |
gatctgaagaagatgcttttacacttattggagaatctgtttcaaattgtagctctgttgatcctgaatcagtactttctcctcctgattttgaacctcc |
327 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19276853 |
gatctgaagaagatgcttttacacttattggagaatttgtttcaaattgtagctctgttgatcctgaatcagtactttctcctcctgattttgaacctcc |
19276754 |
T |
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| Q |
328 |
ctatgtttgaaattgaaaatacaccaaaga-aaaaccttattttcat |
373 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
19276753 |
ctatgtttgaaattgaaaatacaccaaaaacaaaaccttattttcat |
19276707 |
T |
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