View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_34 (Length: 381)
Name: NF1056_high_34
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 33385565 - 33385933
Alignment:
| Q |
10 |
ccacagatgttcctattaagcggtccgtgcgttgccaaccagtccaaaatgccgcaccagatcgagtacatacaagaaagggcactcgnnnnnnngatgt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||| |
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| T |
33385565 |
ccacagatgttcctattaagcggtccgtgcgttgccaaccagtccaaaataccacaccagatcgagtacatacaagaaagggcactcgaaaaaaagatgt |
33385664 |
T |
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| Q |
110 |
tggcaaatttcttcatgtctgaagcagaaaacactgaccatgtcacacacttgatccagcagacctcttcgaaccagtgtgtctttagtagctaatcttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
33385665 |
tggcaaatttcttcatgtctgaagcagaaaacacagagcatgtcacacacttgatccagcagacctcttcgaatcagtgtgtctttagtagctaatctgt |
33385764 |
T |
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| Q |
210 |
catgcaataacctccacgtgaatgctctaattttcgaaggtgcaacactacgccaacgttcttgataacgacgccgaaattgttatcgctgcctgattga |
309 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
33385765 |
catgcaataacctccacgtgaatgctctaat---cgaaggtgcaacactacgccaacgttcttgataacgacaccaaaattgttatcgctgcctgattga |
33385861 |
T |
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| Q |
310 |
tgcaaatcctgctgcattaacatataaccatatttgactgaatatgcatgcttttgatttgaatctccatgt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33385862 |
tgcaaatcctgctgcattaacatataaccatatttgactgaatatgcatgcttttgatttgaatctccatgt |
33385933 |
T |
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