View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_high_37 (Length: 359)
Name: NF1056_high_37
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_37 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 42 - 350
Target Start/End: Original strand, 15979720 - 15980029
Alignment:
| Q |
42 |
acctacaacataatggctgaaatcatatatgaaataata-ttggtttctttacctttttatctcttgagttaagcctgtaacccttaactcacctctaat |
140 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15979720 |
acctacaatataatggctgaaatcatatatgaaataataattggtttctttacctttttatctcttgagttaagcctgtaacccttaactcacttctaat |
15979819 |
T |
|
| Q |
141 |
attatagtgttttattattctctaactattggtcactagaaattgttaattacaacatgagaacctatttttgtaggttaaacatcataacatgactcga |
240 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15979820 |
attatagtgctttattattctctaactattggtcactagaaattgttaattacaacatgagaacctatttttgtaggttaaacatcataacatgactcga |
15979919 |
T |
|
| Q |
241 |
agtagtttttagatagagcctttattttacctatgtcggtatcaatgccaataagcttggattcaaaaggttgcataagacattcgatttcgaaaccaat |
340 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15979920 |
agtagtttttagatagagccttaattttacctatgttggtatcaatgccaataagcttggattcaaaaggttgcataagacatttgatttcgaaaccaat |
15980019 |
T |
|
| Q |
341 |
gaagtataat |
350 |
Q |
| |
|
||||||||| |
|
|
| T |
15980020 |
aaagtataat |
15980029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University