View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_39 (Length: 349)
Name: NF1056_high_39
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 39630311 - 39630069
Alignment:
| Q |
5 |
ataccatttccctc-taagccactgaaaccttgctccaagcgatatctatcctcgttgttcctcttctgaagaaaccttcttcattgtattagagattat |
103 |
Q |
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| T |
39630311 |
ataccatgtccctcctaagccactgaaaccttgctccaagcgatatctatcctcgttgttcctcttctgaagaaaccttcttcattgtattagagattat |
39630212 |
T |
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| Q |
104 |
acgacctctaaaaatatttggtatgctctaggcttcatctcatttaaatttgtctcaaacccatacattgtcaattgttttaaatgctggctagcttctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630211 |
acgacctctaaaaatatttggtatgctctaggcttcatctcatttaaatttgtctcaaacccatacattgtcaattgttttaaatgctggctagcttctt |
39630112 |
T |
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| Q |
204 |
cgagttccaacttctttgttgttggtgtttggtggtcttggag |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630111 |
cgagttccaacttctttgttgttggtgtttggtggtcttggag |
39630069 |
T |
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