View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_high_44 (Length: 331)

Name: NF1056_high_44
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_high_44
NF1056_high_44
[»] chr6 (27 HSPs)
chr6 (30-266)||(10031534-10031770)
chr6 (179-233)||(19369814-19369868)
chr6 (179-225)||(6751890-6751936)
chr6 (179-230)||(5579654-5579705)
chr6 (183-245)||(1334646-1334708)
chr6 (188-225)||(29959180-29959217)
chr6 (179-243)||(4859121-4859185)
chr6 (184-243)||(34868170-34868229)
chr6 (177-227)||(16503678-16503728)
chr6 (179-225)||(22745962-22746008)
chr6 (167-249)||(34446546-34446628)
chr6 (179-216)||(10157998-10158035)
chr6 (184-229)||(31430281-31430326)
chr6 (179-230)||(785463-785515)
chr6 (179-227)||(16516944-16516992)
chr6 (189-264)||(17168860-17168935)
chr6 (188-230)||(7377979-7378021)
chr6 (186-216)||(9024191-9024221)
chr6 (179-237)||(32225398-32225456)
chr6 (186-223)||(5635903-5635940)
chr6 (179-216)||(7942269-7942306)
chr6 (184-233)||(8623202-8623251)
chr6 (70-103)||(30004842-30004875)
chr6 (62-99)||(33925696-33925733)
chr6 (184-228)||(3449888-3449932)
chr6 (134-166)||(20809719-20809751)
chr6 (179-224)||(26402688-26402735)
[»] chr8 (27 HSPs)
chr8 (161-230)||(26915230-26915299)
chr8 (161-229)||(27733848-27733916)
chr8 (179-230)||(42874522-42874573)
chr8 (179-220)||(31119097-31119138)
chr8 (179-250)||(24295145-24295216)
chr8 (179-230)||(34073986-34074037)
chr8 (179-230)||(10497824-10497875)
chr8 (186-266)||(22770929-22771006)
chr8 (188-245)||(1433330-1433387)
chr8 (187-224)||(6960692-6960729)
chr8 (180-229)||(22600530-22600579)
chr8 (179-239)||(11246087-11246147)
chr8 (188-223)||(1639497-1639532)
chr8 (179-230)||(31548301-31548352)
chr8 (177-235)||(24208712-24208769)
chr8 (186-216)||(29198494-29198524)
chr8 (189-218)||(1591311-1591340)
chr8 (179-224)||(2652345-2652389)
chr8 (179-235)||(3954388-3954444)
chr8 (188-216)||(10441217-10441245)
chr8 (186-230)||(12985392-12985436)
chr8 (188-232)||(14943114-14943158)
chr8 (189-232)||(25104613-25104654)
chr8 (188-216)||(34201063-34201091)
chr8 (185-233)||(34739075-34739123)
chr8 (186-230)||(40063951-40063995)
chr8 (166-230)||(44067516-44067580)
[»] scaffold0024 (1 HSPs)
scaffold0024 (177-261)||(18114-18198)
[»] chr4 (33 HSPs)
chr4 (177-231)||(44362665-44362719)
chr4 (177-224)||(13307883-13307930)
chr4 (179-233)||(37496701-37496755)
chr4 (161-232)||(34589698-34589767)
chr4 (179-230)||(13117429-13117480)
chr4 (189-232)||(28663490-28663533)
chr4 (186-242)||(5654606-5654662)
chr4 (134-221)||(10164817-10164904)
chr4 (186-230)||(18513256-18513300)
chr4 (166-230)||(20743273-20743337)
chr4 (186-243)||(10546135-10546192)
chr4 (183-224)||(10634996-10635037)
chr4 (179-223)||(13484030-13484075)
chr4 (188-248)||(11017799-11017859)
chr4 (186-230)||(14465309-14465353)
chr4 (179-219)||(22799901-22799941)
chr4 (178-237)||(31851901-31851963)
chr4 (173-216)||(683066-683109)
chr4 (161-204)||(20633508-20633551)
chr4 (185-235)||(4090097-4090147)
chr4 (165-226)||(20119949-20120011)
chr4 (188-230)||(49887756-49887798)
chr4 (179-216)||(9988707-9988744)
chr4 (169-210)||(27062914-27062955)
chr4 (188-224)||(5176990-5177026)
chr4 (186-230)||(7012066-7012110)
chr4 (184-216)||(8457939-8457971)
chr4 (184-220)||(9298943-9298979)
chr4 (188-216)||(26276026-26276054)
chr4 (173-217)||(35480167-35480211)
chr4 (186-230)||(43299986-43300030)
chr4 (186-230)||(43300616-43300660)
chr4 (188-244)||(44796979-44797035)
[»] chr7 (31 HSPs)
chr7 (179-229)||(5937429-5937479)
chr7 (179-230)||(1885573-1885624)
chr7 (186-237)||(38134421-38134472)
chr7 (178-232)||(35238191-35238245)
chr7 (179-223)||(2144547-2144591)
chr7 (173-220)||(2143855-2143902)
chr7 (179-238)||(44317294-44317353)
chr7 (177-224)||(48964068-48964115)
chr7 (179-229)||(22801749-22801799)
chr7 (164-216)||(23930233-23930285)
chr7 (161-216)||(7133268-7133323)
chr7 (178-216)||(44172897-44172935)
chr7 (179-227)||(13094721-13094769)
chr7 (179-211)||(25956464-25956496)
chr7 (177-228)||(31808515-31808566)
chr7 (177-230)||(16827639-16827693)
chr7 (174-224)||(28635173-28635223)
chr7 (194-232)||(31376998-31377036)
chr7 (177-223)||(36196787-36196833)
chr7 (186-223)||(6091334-6091371)
chr7 (179-224)||(9050141-9050186)
chr7 (179-224)||(10702552-10702596)
chr7 (185-218)||(18678160-18678193)
chr7 (191-232)||(23165408-23165449)
chr7 (179-216)||(37775996-37776033)
chr7 (179-224)||(37820086-37820131)
chr7 (70-106)||(992006-992042)
chr7 (186-230)||(2525859-2525903)
chr7 (179-243)||(21880139-21880203)
chr7 (184-216)||(35917393-35917425)
chr7 (166-230)||(43249993-43250057)
[»] chr5 (27 HSPs)
chr5 (181-235)||(30080511-30080565)
chr5 (179-245)||(19167584-19167651)
chr5 (161-227)||(26205750-26205816)
chr5 (179-232)||(21319953-21320006)
chr5 (179-228)||(38784808-38784857)
chr5 (183-231)||(9031937-9031985)
chr5 (186-242)||(11596470-11596526)
chr5 (177-221)||(16207597-16207641)
chr5 (184-223)||(42192283-42192322)
chr5 (177-230)||(28296328-28296381)
chr5 (167-216)||(31264452-31264501)
chr5 (188-237)||(38749580-38749629)
chr5 (198-230)||(309158-309190)
chr5 (179-223)||(10010561-10010605)
chr5 (179-214)||(10009842-10009877)
chr5 (161-212)||(10358121-10358172)
chr5 (180-231)||(15294930-15294981)
chr5 (165-216)||(25863218-25863269)
chr5 (186-229)||(43208289-43208332)
chr5 (173-230)||(15302525-15302580)
chr5 (186-231)||(4344741-4344786)
chr5 (186-230)||(2039864-2039908)
chr5 (186-230)||(2577195-2577239)
chr5 (193-229)||(18106654-18106690)
chr5 (168-216)||(18607094-18607142)
chr5 (177-237)||(36611452-36611512)
chr5 (188-216)||(41558671-41558699)
[»] chr2 (27 HSPs)
chr2 (179-229)||(43586013-43586063)
chr2 (179-226)||(13501086-13501133)
chr2 (179-230)||(18512150-18512201)
chr2 (177-220)||(24067263-24067306)
chr2 (179-221)||(14450803-14450845)
chr2 (174-230)||(10535762-10535818)
chr2 (186-229)||(18570973-18571016)
chr2 (188-230)||(40681982-40682024)
chr2 (186-232)||(45000861-45000906)
chr2 (185-230)||(26787812-26787857)
chr2 (181-225)||(11439800-11439844)
chr2 (179-227)||(33884054-33884102)
chr2 (179-223)||(37211893-37211937)
chr2 (177-225)||(42665613-42665661)
chr2 (179-222)||(24067758-24067801)
chr2 (167-230)||(30563409-30563472)
chr2 (179-230)||(44984658-44984709)
chr2 (179-229)||(14373435-14373485)
chr2 (179-229)||(16630796-16630846)
chr2 (194-232)||(39399910-39399948)
chr2 (186-227)||(31026698-31026739)
chr2 (193-229)||(2356380-2356416)
chr2 (180-216)||(6180874-6180910)
chr2 (165-237)||(23354646-23354718)
chr2 (63-91)||(27288330-27288358)
chr2 (188-224)||(37491872-37491908)
chr2 (54-98)||(41033032-41033076)
[»] chr3 (26 HSPs)
chr3 (179-230)||(49179723-49179774)
chr3 (143-237)||(15864238-15864338)
chr3 (177-246)||(13005409-13005479)
chr3 (183-225)||(14338495-14338537)
chr3 (179-245)||(28590858-28590924)
chr3 (161-229)||(12704647-12704715)
chr3 (161-230)||(25074789-25074858)
chr3 (164-229)||(27903633-27903698)
chr3 (184-229)||(34409355-34409400)
chr3 (184-225)||(52558141-52558182)
chr3 (182-230)||(6984764-6984812)
chr3 (179-230)||(9210833-9210884)
chr3 (161-212)||(25892478-25892529)
chr3 (161-244)||(34307770-34307853)
chr3 (181-224)||(42076759-42076802)
chr3 (165-216)||(52369789-52369840)
chr3 (179-249)||(19323456-19323526)
chr3 (188-233)||(13799501-13799546)
chr3 (159-216)||(19730198-19730254)
chr3 (159-216)||(19750788-19750844)
chr3 (179-216)||(44427855-44427892)
chr3 (70-106)||(16790186-16790222)
chr3 (188-224)||(24399660-24399696)
chr3 (161-229)||(25652021-25652089)
chr3 (184-232)||(34909866-34909914)
chr3 (188-216)||(40017386-40017414)
[»] scaffold0504 (1 HSPs)
scaffold0504 (179-237)||(8705-8763)
[»] scaffold0314 (1 HSPs)
scaffold0314 (179-225)||(8953-8999)
[»] chr1 (26 HSPs)
chr1 (184-244)||(14332395-14332454)
chr1 (160-229)||(24176820-24176890)
chr1 (179-229)||(40176604-40176654)
chr1 (179-249)||(40686766-40686836)
chr1 (179-220)||(18946042-18946083)
chr1 (181-230)||(24462280-24462329)
chr1 (161-230)||(42004937-42005006)
chr1 (179-230)||(28170382-28170432)
chr1 (171-238)||(29415740-29415807)
chr1 (177-220)||(43966816-43966859)
chr1 (186-233)||(50233398-50233445)
chr1 (186-216)||(3921681-3921711)
chr1 (178-216)||(8203835-8203873)
chr1 (187-237)||(40317832-40317882)
chr1 (188-230)||(40747790-40747832)
chr1 (161-214)||(6936390-6936443)
chr1 (177-230)||(7988457-7988510)
chr1 (187-216)||(11571599-11571628)
chr1 (186-235)||(33202898-33202947)
chr1 (186-230)||(11412783-11412827)
chr1 (186-230)||(19637768-19637812)
chr1 (195-227)||(22316390-22316422)
chr1 (188-232)||(29230063-29230107)
chr1 (179-223)||(34184675-34184719)
chr1 (189-233)||(39410639-39410683)
chr1 (189-229)||(42325561-42325601)
[»] scaffold0011 (1 HSPs)
scaffold0011 (186-264)||(240036-240114)
[»] scaffold0508 (1 HSPs)
scaffold0508 (65-98)||(9868-9901)
[»] scaffold0022 (1 HSPs)
scaffold0022 (188-237)||(99886-99935)
[»] scaffold0571 (1 HSPs)
scaffold0571 (184-216)||(7704-7736)
[»] scaffold0019 (1 HSPs)
scaffold0019 (70-98)||(104232-104260)
[»] scaffold0007 (1 HSPs)
scaffold0007 (174-230)||(225271-225327)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 266
Target Start/End: Complemental strand, 10031770 - 10031534
Alignment:
Q  30 ccttaagctctccaagacagcttataaaaacaattttaactttattttttgttatagaaataacttatatgtaagcagtaagcactttatatgataaatg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  10031770 ccttaagctctccaagacagcttataaaaacaattttaactttattttttgttatagaaataacttatacgtaagcactaagcactttatatgataaatg 10031671  T
Q  130 gtcagttgcaccaacacttctgattgaacgtgtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031670 gtcagttgcaccgacactgctgattgaacgtgtgttcgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 10031571  T
Q  230 caacatgtttgtgtcatgtctggtatccgtgtctgtg 266  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10031570 caacgtgtttgtgtcatgtctggtatccgtgtctgtg 10031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 19369868 - 19369814
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19369868 acacttgtgattacattgaattatgtcattttctcaaaattttatccgtgtcaac 19369814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 6751890 - 6751936
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  6751890 acacttgtgattacattgaattatgtcattttctcaaaattttatcg 6751936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 5579705 - 5579654
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  5579705 acacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtc 5579654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 1334708 - 1334646
Alignment:
Q  183 ttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtca 245  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||  ||| |||||||    
T  1334708 ttgtgattacattgaattatgtccttttttcaaaattttatccgtgtcaatgtgtctgtgtca 1334646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 225
Target Start/End: Complemental strand, 29959217 - 29959180
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcg 225  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttatcg 29959180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 4859121 - 4859185
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgt 243  Q
    |||| ||||||||||||| ||||||||||||||||||| | |||| |||||| ||||||| ||||    
T  4859121 acacgtgtgattacattggattatgtcattttctcaaattattattggtgtcgacatgttagtgt 4859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 34868170 - 34868229
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgt 243  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||| || |||| ||||    
T  34868170 tgtgattacattgaattatgatattctctcaaaattttatcggtgtcgacgtgttagtgt 34868229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 16503728 - 16503678
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    ||||||| |||||||||||||||||| |  |||||||||||||||||||||    
T  16503728 caacactagtgattacattgaattatatagttttctcaaaattttatcggt 16503678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 22746008 - 22745962
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||    
T  22746008 acacttgtgattacattgaaatataacattttctcaaaattttatcg 22745962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 34446628 - 34446546
Alignment:
Q  167 gacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtc 249  Q
    ||||| ||||| |||| | |||||||| |||||||||||||||||||||| | ||||| ||||||   ||| |||||||||||    
T  34446628 gacaccgacacgacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcagagtgtctgtgtcatgtc 34446546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 10158035 - 10157998
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| |||||||||||||||||||||||||||||||||    
T  10158035 acacatgtgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 31430326 - 31430281
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||| ||| ||||||||||||||||||||||| |||||    
T  31430326 tgtgattacatttaatcatgtcattttctcaaaattttattggtgt 31430281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 785463 - 785515
Alignment:
Q  179 acacttgtgattacattgaattatgtcatt-ttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||||||||||| || | ||||||||||| |||||    
T  785463 acacttgtgattacattgaattatgtcattattttgaaaattttatcagtgtc 785515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 16516992 - 16516944
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||||    
T  16516992 acactagtgattacattgaattatatagttttctcaaaattttatcggt 16516944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 17168935 - 17168860
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtctggtatccgtgtctg 264  Q
    |||||||||||||||||||||| ||||| | |||||  |||| || |||||||||| |||  ||| ||||||||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgtgtttgtgtcgtgttcggtgtccgtgtctg 17168860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 7378021 - 7377979
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||    
T  7378021 attacattgaattatgtgattttctcaaatttttagcggtgtc 7377979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 9024191 - 9024221
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  9024191 tgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 32225398 - 32225456
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    |||| |||||||||||||| | | || |||||||||||||||||||||  |||||||||    
T  32225398 acacctgtgattacattgactcacgttattttctcaaaattttatcggcttcaacatgt 32225456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 5635903 - 5635940
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  5635903 tgattatattgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 7942306 - 7942269
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  7942306 acacatgtgattacattgaattatgtcattgtctcaaa 7942269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 8623251 - 8623202
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    |||||||||||| ||| |||||||||||| ||| | ||||||||||||||    
T  8623251 tgtgattacattcaatgatgtcattttctaaaattgttatcggtgtcaac 8623202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 30004875 - 30004842
Alignment:
Q  70 tttattttttgttatagaaataacttatatgtaa 103  Q
    ||||||||||||||||||||||||||||| ||||    
T  30004875 tttattttttgttatagaaataacttatacgtaa 30004842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 33925733 - 33925696
Alignment:
Q  62 attttaactttattttttgttatagaaataacttatat 99  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  33925733 attttaactttatcttttgttatagaaatagcttatat 33925696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 3449888 - 3449932
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtg 228  Q
    ||||||| |||||||||||||||||  || |||||||||||||||    
T  3449888 tgtgattgcattgaattatgtcattggcttaaaattttatcggtg 3449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 20809751 - 20809719
Alignment:
Q  134 gttgcaccaacacttctgattgaacgtgtgtcc 166  Q
    |||||||||||||||||||||||| ||||||||    
T  20809751 gttgcaccaacacttctgattgaaagtgtgtcc 20809719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 26402688 - 26402735
Alignment:
Q  179 acacttgtgattacattgaattatgtca--ttttctcaaaattttatc 224  Q
    ||||||||||||||| ||||||||||||  |||| |||||||||||||    
T  26402688 acacttgtgattacactgaattatgtcattttttttcaaaattttatc 26402735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 26915230 - 26915299
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  26915230 gtgtccgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtc 26915299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 27733916 - 27733848
Alignment:
Q  161 gtgtccgacactgacac-aacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27733916 gtgtccgaca-tgacaccaacacttgtgattacattgaattatatcattttctcaaaattttatcggtgt 27733848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 42874573 - 42874522
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  42874573 acacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtc 42874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 31119138 - 31119097
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 24295145 - 24295216
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtct 250  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||| |||| ||||||  ||||| |||||    
T  24295145 acacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacatgtcagtgtcgtgtct 24295216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 34073986 - 34074037
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  34073986 acacttatgattacattaaattatgtcattttttcaaaattttatcggtgtc 34074037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 10497824 - 10497875
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||| |||||    
T  10497824 acacttgtgattacatcaaattatgttattttctcaaaattttatccgtgtc 10497875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 22771006 - 22770929
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtctggtatccgtgtctgtg 266  Q
    |||||||||||||||||||  |||| ||||| | ||||||||||   | ||||||||||||||||||| ||||||| ||||    
T  22771006 tgattacattgaattatgttgttttatcaaattattatcggtgt---cttgtttgtgtcatgtctggtgtccgtgtatgtg 22770929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 1433387 - 1433330
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtca 245  Q
    ||||||||| ||||||||||||||||||| |  |||  ||||||||||||||||||||    
T  1433387 attacattggattatgtcattttctcaaattactattagtgtcaacatgtttgtgtca 1433330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 6960692 - 6960729
Alignment:
Q  187 gattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttatc 6960729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 22600579 - 22600530
Alignment:
Q  180 cacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  22600579 cacttgtgattatattgaattatgtcattttctttaaattttattggtgt 22600530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 11246087 - 11246147
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgttt 239  Q
    |||||||  ||||||||| ||||||| |||||||||||||||||||| || |||| |||||    
T  11246087 acacttgaaattacattgcattatgttattttctcaaaattttatcgatgccaacgtgttt 11246147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 1639532 - 1639497
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttat 223  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1639532 attacattgaattatgtcattttctcaaaatattat 1639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 31548301 - 31548352
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| ||||||||||||||||||||||||||| |||||   |||||||||||    
T  31548301 acacatgtgattacattgaattatgtcattttatcaaataattatcggtgtc 31548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 24208712 - 24208769
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacat 235  Q
    ||||||| |||||| ||||||| ||||||||||||| ||||||||||  ||||||||||    
T  24208712 caacactagtgatt-cattgaaatatgtcattttcttaaaattttattagtgtcaacat 24208769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 216
Target Start/End: Original strand, 29198494 - 29198524
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  29198494 tgattacattgaattatgtcattttctcaaa 29198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 218
Target Start/End: Complemental strand, 1591340 - 1591311
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaat 218  Q
    ||||||||||||||||||||||||||||||    
T  1591340 ttacattgaattatgtcattttctcaaaat 1591311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 2652389 - 2652345
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||||    
T  2652389 acacttgtgattacatt-aattatgtcattttctaaaaaatttatc 2652345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 3954388 - 3954444
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacat 235  Q
    |||| |||||||| |||||| || ||||||||||||||||||||  |||||| ||||    
T  3954388 acacatgtgattaaattgaaatacgtcattttctcaaaattttacaggtgtcgacat 3954444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 10441245 - 10441217
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaa 10441217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 12985436 - 12985392
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||| ||||||||||| | |||| ||||||    
T  12985436 tgattacattgaattatgtgattttctcaaattattataggtgtc 12985392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 14943114 - 14943158
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    |||||| ||||| | ||||||||||||||||||||| ||||||||    
T  14943114 attacactgaatcaagtcattttctcaaaattttattggtgtcaa 14943158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 25104613 - 25104654
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||||||  |||||||| |||||||||||||||||||||    
T  25104613 ttacattgaatt--gtcattttgtcaaaattttatcggtgtcaa 25104654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 34201063 - 34201091
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  34201063 attacattgaattatgtcattttctcaaa 34201091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 34739075 - 34739123
Alignment:
Q  185 gtgattacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    |||| ||||||||||||||||||||||||| | | |||||| |||||||    
T  34739075 gtgactacattgaattatgtcattttctcatattattatcgatgtcaac 34739123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 40063995 - 40063951
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||| |||||||||||||||||||||| | |||| ||||||    
T  40063995 tgattacaatgaattatgtcattttctcaaattattattggtgtc 40063951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 44067580 - 44067516
Alignment:
Q  166 cgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| ||||| |||||| | |||||| || ||||||||||||||||||| | ||||| |||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtc 44067516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 18114 - 18198
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtctggtatccgtgt 261  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||  ||||| |||||||| |||||||    
T  18114 caacacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgtccgtgt 18198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 44362719 - 44362665
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44362719 caacacttgtgattacattaaattatgtcattttctcaaaattttatcggtgtca 44362665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 13307930 - 13307883
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13307930 caacacttgtgattacattgaattatgtcattttctcaaaattttatc 13307883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 37496755 - 37496701
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37496755 acacttgtgattacattgaattatgtcattttctcaaaaaattatcggtgtcaac 37496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 232
Target Start/End: Original strand, 34589698 - 34589767
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||| | |||||||||||||    
T  34589698 gtgtccgacactgacacgacacatg--attacattgaattatgtcattttctcaaattgttatcggtgtcaa 34589767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 13117480 - 13117429
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||||    
T  13117480 acacttgtgattacattgaattttgtcattttctccaaattttattggtgtc 13117429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 28663533 - 28663490
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttatccgtgtcaa 28663490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 5654606 - 5654662
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtg 242  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||| |||||| ||||    
T  5654606 tgattacattgaattatgtcattttctcaaattattatcagtgtcgacatgtctgtg 5654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 10164817 - 10164904
Alignment:
Q  134 gttgcaccaacacttctgattgaacgtgtgtccgacactgacaca-acacttgtgattacattgaattatgtcattttctcaaaatttt 221  Q
    |||||| |||||||||| | |||| | |||||||||||| | ||  |||||||||||||||||||||||||||||||| |||| |||||    
T  10164817 gttgcatcaacacttctaactgaaggcgtgtccgacact-atactgacacttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 18513256 - 18513300
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||||||||||||||| | |||||||||||    
T  18513256 tgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 20743273 - 20743337
Alignment:
Q  166 cgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| |||||||||| | |||||||| |||||||||||||||||||||| | ||||| |||||    
T  20743273 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtc 20743337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 10546192 - 10546135
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgt 243  Q
    ||||||||||||||||||||||||||||||| | |||||  |||| |||||| |||||    
T  10546192 tgattacattgaattatgtcattttctcaaattattatcattgtcgacatgtctgtgt 10546135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 224
Target Start/End: Complemental strand, 10635037 - 10634996
Alignment:
Q  183 ttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||| |||||||||||||||||||| |||||||||||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaattttatc 10634996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 13484075 - 13484030
Alignment:
Q  179 acacttgtgattacatt-gaattatgtcattttctcaaaattttat 223  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||    
T  13484075 acacttgtgattacatttgaattatgttattttctcaaaattttat 13484030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 11017799 - 11017859
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgt 248  Q
    ||||||||||||||  | ||||||| |||||||||| ||||||||| |||| |||||||||    
T  11017799 attacattgaattagattattttcttaaaattttattggtgtcaacgtgttcgtgtcatgt 11017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 14465309 - 14465353
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| |||||||||||||||||||||||| | |||||||||||    
T  14465309 tgattaaattgaattatgtcattttctcaaattattatcggtgtc 14465353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 22799901 - 22799941
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaatt 219  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  22799901 acacgtgtgattacattgaattatgtcattttctaaaaatt 22799941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 31851901 - 31851963
Alignment:
Q  178 aacacttgtgattacattgaattatgtcattttct---caaaattttatcggtgtcaacatgt 237  Q
    ||||| ||||||||||||||||||||  |||||||   ||||||||||||||||||| |||||    
T  31851901 aacacatgtgattacattgaattatgctattttcttctcaaaattttatcggtgtcagcatgt 31851963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 683109 - 683066
Alignment:
Q  173 gacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||    
T  683109 gacacgacacatgtgattacattcaattatgtcattttctcaaa 683066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 20633551 - 20633508
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgt 204  Q
    ||||||||||| ||||| |||||||| |||||||||||||||||    
T  20633551 gtgtccgacaccgacacgacacttgtaattacattgaattatgt 20633508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 4090097 - 4090147
Alignment:
Q  185 gtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacat 235  Q
    |||||| | |||| |||||||||||||||||||||||| ||| ||||||||    
T  4090097 gtgattgctttgagttatgtcattttctcaaaattttaccggggtcaacat 4090147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 20120011 - 20119949
Alignment:
Q  165 ccgacactgacac-aacacttgtgattacattgaattatgtcattttctcaaaattttatcgg 226  Q
    ||||||| ||||| ||||| |||||||||||| |||||| ||||||||||||| | |||||||    
T  20120011 ccgacacagacactaacacatgtgattacattaaattatttcattttctcaaattattatcgg 20119949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 49887798 - 49887756
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||||||  |||||||||||||| ||||    
T  49887798 attacattgaattatgtcatttcttcaaaattttatcgatgtc 49887756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 9988707 - 9988744
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  9988707 acacatgtgattacattcaattatgtcattttctcaaa 9988744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 27062914 - 27062955
Alignment:
Q  169 cactgacacaacacttgtgattacattgaattatgtcatttt 210  Q
    |||||||||||||| | ||||||||||||||||||| |||||    
T  27062914 cactgacacaacacgtttgattacattgaattatgttatttt 27062955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 5177026 - 5176990
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  5177026 attacattgaattatgttattttctcaaaatattatc 5176990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 7012110 - 7012066
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| ||| |||||||||||||||||||||| | |||||||||||    
T  7012110 tgatcacactgaattatgtcattttctcaaattattatcggtgtc 7012066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 8457971 - 8457939
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||| ||||||||||||||||||||    
T  8457971 tgtgattacattcaattatgtcattttctcaaa 8457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 9298979 - 9298943
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattt 220  Q
    |||||| |||||||||||||||||||||| |||||||    
T  9298979 tgtgatgacattgaattatgtcattttcttaaaattt 9298943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 26276026 - 26276054
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  26276026 attacattgaattatgtcattttctcaaa 26276054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 35480211 - 35480167
Alignment:
Q  173 gacacaacacttgtgattacattgaattatgtcattttctcaaaa 217  Q
    |||||||||| | ||| ||||||||||||||||||||||| ||||    
T  35480211 gacacaacacatctgaatacattgaattatgtcattttctaaaaa 35480167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 43299986 - 43300030
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||| ||||||||||| | ||||| |||||    
T  43299986 tgattacattgaattatgtaattttctcaaattattatccgtgtc 43300030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 43300660 - 43300616
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||| ||||||||||| | ||||| |||||    
T  43300660 tgattacattgaattatgtaattttctcaaattattatccgtgtc 43300616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 44796979 - 44797035
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtc 244  Q
    ||||||||||||||||| ||||||||||| | || |||||||  |||||| ||||||    
T  44796979 attacattgaattatgttattttctcaaattattgtcggtgttgacatgtctgtgtc 44797035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 5937429 - 5937479
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5937429 acacttgtgattacattgaattatgtcattttctcaaaattttatccgtgt 5937479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 1885624 - 1885573
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  1885624 acacttgtgattacattgaattatgtcattttttcaaaattttatccgtgtc 1885573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 38134421 - 38134472
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  38134421 tgattacattgaattatgtcattttctcaaattattatcggtgtcaacatgt 38134472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 35238191 - 35238245
Alignment:
Q  178 aacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||    
T  35238191 aacacgtgtgattatattgaattatgtcattttctcaaaatattatcggtgtcaa 35238245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 2144547 - 2144591
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  2144547 acacgtgtgattacattgaattatgtcattttctcaaaattttat 2144591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 2143855 - 2143902
Alignment:
Q  173 gacacaacacttgtgattacattgaattatgtcattttctcaaaattt 220  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2143855 gacacatcacatgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 44317294 - 44317353
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtt 238  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  44317294 acacttatgattacattgaattatgtcatttttttaaaattttatcagtgtcaacgtgtt 44317353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 48964068 - 48964115
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  48964068 caacacttgtgattaaattgaattatgtcattttctcacaattttatc 48964115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 22801749 - 22801799
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    ||||||||||||||| |||||||||||||| ||||||||||| ||||||||    
T  22801749 acacttgtgattacagtgaattatgtcattatctcaaaatttgatcggtgt 22801799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 23930285 - 23930233
Alignment:
Q  164 tccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||||||| |||||||||| | |||||||| ||||||||||||||||||||||    
T  23930285 tccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaa 23930233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 7133268 - 7133323
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||| |||||| ||| | |||||||| ||||||||||||||||||||||    
T  7133268 gtgtccgacaccgacacaccacctatgattacactgaattatgtcattttctcaaa 7133323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 44172897 - 44172935
Alignment:
Q  178 aacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  44172897 aacacatgtgattacattgaattatgtcattttctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Original strand, 13094721 - 13094769
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    ||||| |||||||||||||||||| |  |||||||||||||||||||||    
T  13094721 acactagtgattacattgaattatatagttttctcaaaattttatcggt 13094769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 25956496 - 25956464
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttc 211  Q
    |||||||||||||||||||||||||||||||||    
T  25956496 acacttgtgattacattgaattatgtcattttc 25956464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 31808515 - 31808566
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtg 228  Q
    |||||| |||||||||||||| || ||||||||||||||| | |||||||||    
T  31808515 caacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg 31808566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 16827693 - 16827639
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaat-tttatcggtgtc 230  Q
    |||||| |||||||||||||||| ||||||||| |||||| | ||||||||||||    
T  16827693 caacacatgtgattacattgaatcatgtcatttgctcaaattatttatcggtgtc 16827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 28635173 - 28635223
Alignment:
Q  174 acacaacacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||| ||||||||| ||||||| ||  |||||||||||||||||||    
T  28635173 acacaacacatgtgattacgttgaattgtgaaattttctcaaaattttatc 28635223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 31377036 - 31376998
Alignment:
Q  194 ttgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  31377036 ttgaattatgtcattttctcaaaattttattgatgtcaa 31376998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 223
Target Start/End: Complemental strand, 36196833 - 36196787
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||    
T  36196833 caacacttgtgattatgttgaattatgttgttttctcaaaattttat 36196787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 6091371 - 6091334
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  6091371 tgattatattgaattatatcattttctcaaaattttat 6091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 9050141 - 9050186
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    |||| |||||||| |||||| ||||||||||| |||||||||||||    
T  9050141 acacatgtgattatattgaactatgtcattttttcaaaattttatc 9050186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 10702552 - 10702596
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||    
T  10702552 acacttataattacattgaat-atgtcattttctcaaaattttatc 10702596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 218
Target Start/End: Complemental strand, 18678193 - 18678160
Alignment:
Q  185 gtgattacattgaattatgtcattttctcaaaat 218  Q
    ||||||| ||||||||||||||||||||||||||    
T  18678193 gtgattatattgaattatgtcattttctcaaaat 18678160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 23165408 - 23165449
Alignment:
Q  191 acattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||| |||||||||||||||||| |||||||| ||||    
T  23165408 acattgaatcatgtcattttctcaaaatattatcggtttcaa 23165449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 37776033 - 37775996
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  37776033 acacatgtgattacatttaattatgtcattttctcaaa 37775996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 37820131 - 37820086
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||| ||||||||| |||||||| ||||| |||||||||||||    
T  37820131 acacttgcgattacattaaattatgttattttttcaaaattttatc 37820086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 992042 - 992006
Alignment:
Q  70 tttattttttgttatagaaataacttatatgtaagca 106  Q
    |||||||||||||||||||| |||||||| |||||||    
T  992042 tttattttttgttatagaaacaacttatacgtaagca 992006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 2525859 - 2525903
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| ||||||||||||||||| |||||| | |||||||||||    
T  2525859 tgattatattgaattatgtcatttgctcaaattattatcggtgtc 2525903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 21880203 - 21880139
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgt 243  Q
    |||||||| |||||| |||||||||| ||||||||||| | ||| || |||| ||||||| ||||    
T  21880203 acacttgtaattacactgaattatgtaattttctcaaattattagcgatgtccacatgttagtgt 21880139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 35917393 - 35917425
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||||||||| |||||||||||||    
T  35917393 tgtgattacattgaattatatcattttctcaaa 35917425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 43250057 - 43249993
Alignment:
Q  166 cgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| ||||| |||||| | |||||| || ||||||||||||||||||| | ||||| |||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtc 43249993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 30080511 - 30080565
Alignment:
Q  181 acttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattttatcagtgtcgacat 30080565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 245
Target Start/End: Original strand, 19167584 - 19167651
Alignment:
Q  179 acacttgtgattacattgaattatgtca-ttttctcaaaattttatcggtgtcaacatgtttgtgtca 245  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||| |||||||    
T  19167584 acacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtca 19167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 26205750 - 26205816
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    |||||||||||  |||| |||| | |||||||| |||||||||||||||||||||||||||||||||    
T  26205750 gtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaaattttatcggt 26205816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 21319953 - 21320006
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||| |||||||    
T  21319953 acacttgtgattacattgaattatatcattttttcaaaattttatccgtgtcaa 21320006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 38784857 - 38784808
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtg 228  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  38784857 acacttgtgattacattgaattatatcattttttcacaattttatcggtg 38784808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 9031937 - 9031985
Alignment:
Q  183 ttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 231  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  9031937 ttgtgattagattgaattatgtcatttcctcaaaaatttatcggtgtca 9031985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Original strand, 11596470 - 11596526
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtg 242  Q
    ||||||||||||||||||||||||||||||| | |||||||| || || ||||||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgtttgtg 11596526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 16207597 - 16207641
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaatttt 221  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  16207597 caacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 42192322 - 42192283
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  42192322 tgtgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 28296381 - 28296328
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||| | ||| ||||||||||||||||||||||||||| | |||||||||||    
T  28296381 caacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtc 28296328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 31264501 - 31264452
Alignment:
Q  167 gacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| |||||| |||||| |||||||| ||||||||||||||||||||||    
T  31264501 gacattgacacgacacttatgattacactgaattatgtcattttctcaaa 31264452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 38749580 - 38749629
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||||||||||||||||||||| ||||| | ||||||||||| ||||||    
T  38749580 attacattgaattatgtcattttttcaaattattatcggtgtcgacatgt 38749629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 309190 - 309158
Alignment:
Q  198 attatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||||||||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtc 309158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 10010605 - 10010561
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||| |||||||||| |||||||||||||||| ||||||||||||    
T  10010605 acacatgtgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 10009877 - 10009842
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctca 214  Q
    |||| |||||||||||||||||||||||||||||||    
T  10009877 acacatgtgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 10358172 - 10358121
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttct 212  Q
    ||||| |||||||||||||||| | |||||||||| | ||||||||||||||    
T  10358172 gtgtctgacactgacacaacacatttgattacattcagttatgtcattttct 10358121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 15294981 - 15294930
Alignment:
Q  180 cacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtca 231  Q
    ||||||||||||| ||||||||||||||||| ||||||| | ||||| ||||    
T  15294981 cacttgtgattaccttgaattatgtcattttttcaaaatatcatcggcgtca 15294930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 25863269 - 25863218
Alignment:
Q  165 ccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||| |||||| | |||||| |||||||| |||||||||||||    
T  25863269 ccgacactgacacgacacttataattacactgaattatatcattttctcaaa 25863218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 43208289 - 43208332
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    ||||||||||||||||||||||||||||||| |  |||||||||    
T  43208289 tgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 15302580 - 15302525
Alignment:
Q  173 gacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||| |||||||||||||| |||||||  |||||||| |||||||||||||| ||||    
T  15302580 gacacgacacttgtgattaccttgaatt--gtcattttttcaaaattttatcgttgtc 15302525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 4344786 - 4344741
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtca 231  Q
    |||||||| |||||||||||||||| ||||| | ||||||||||||    
T  4344786 tgattacactgaattatgtcattttttcaaattattatcggtgtca 4344741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 2039864 - 2039908
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||| |||||||||||||||| | ||| |||||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattattaccggtgtc 2039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 2577195 - 2577239
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||| | |||||||||||||||||||| | |||||||||||    
T  2577195 tgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 18106654 - 18106690
Alignment:
Q  193 attgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  18106654 attgaattatatcattttttcaaaattttatcggtgt 18106690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 18607094 - 18607142
Alignment:
Q  168 acactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| ||||| |||| | ||||||||||||||||||| |||||||||||    
T  18607094 acacagacacgacacctatgattacattgaattatgttattttctcaaa 18607142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 36611512 - 36611452
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    |||||| ||| ||||| || |||||||||||||||| ||| |  |||||||||||||||||    
T  36611512 caacacatgtcattacgttcaattatgtcattttcttaaactactatcggtgtcaacatgt 36611452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 41558671 - 41558699
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  41558671 attacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 43586013 - 43586063
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43586013 acacttgtgattacattgaattatgtcattttctcaaaattttatctgtgt 43586063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 13501086 - 13501133
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcgg 226  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaattttatcgg 13501133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 18512150 - 18512201
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  18512150 acacatgtgattacattgaattatattattttctcaaaattttatcggtgtc 18512201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 24067306 - 24067263
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattt 220  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  24067306 caacacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 14450803 - 14450845
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaatttt 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 10535762 - 10535818
Alignment:
Q  174 acacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| |||||| |||||||| |||||||||||||||||||||| | |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 18571016 - 18570973
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    ||||||||||||||||||||||||||||||| | ||||||||||    
T  18571016 tgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 40682024 - 40681982
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||||||||||||| | |||||||||||    
T  40682024 attacattgaattatgtcattttctcaaattattatcggtgtc 40681982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 45000861 - 45000906
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  45000861 tgattacattgaattgtgtcattttctc-aaattttatcggtgtcaa 45000906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 26787812 - 26787857
Alignment:
Q  185 gtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  26787812 gtgattacatcgaattatgtcattttctcaaatttttattggtgtc 26787857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 11439844 - 11439800
Alignment:
Q  181 acttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    ||||||||||||| |||||||||| ||||||||| ||||||||||    
T  11439844 acttgtgattacactgaattatgttattttctcataattttatcg 11439800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 33884102 - 33884054
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    |||||||| |||||| ||||| |||||||||||||| ||||||||||||    
T  33884102 acacttgtaattacactgaatcatgtcattttctcacaattttatcggt 33884054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 37211893 - 37211937
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||||||| ||||||||||||| |||||||||||| |||||||||    
T  37211893 acacttgtaattacattgaattgtgtcattttctcgaaattttat 37211937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 42665661 - 42665613
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||| |||||||||||||||| ||||||| || ||||||||||||||    
T  42665661 caacacatgtgattacattgaatcatgtcatcttttcaaaattttatcg 42665613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 222
Target Start/End: Complemental strand, 24067801 - 24067758
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaatttta 222  Q
    |||||||||||| |||| ||||||| ||||||||||||||||||    
T  24067801 acacttgtgatttcatttaattatgacattttctcaaaatttta 24067758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 30563472 - 30563409
Alignment:
Q  167 gacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||| |||||||||| | |  |||||||||||||||||||||||||||| | ||||| |||||    
T  30563472 gacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattatccgtgtc 30563409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 44984658 - 44984709
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| || ||||||    
T  44984658 acacttgtgatcacattgaattatatcattttttcaaaatttgataggtgtc 44984709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 14373435 - 14373485
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||| |||||||||||||||||||||||||   |||||||||||| |||||    
T  14373435 acacatgtgattacattgaattatgtcattgcgtcaaaattttattggtgt 14373485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 16630846 - 16630796
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||| |||||||| |||||||||||||||||||| ||| | ||||||||||    
T  16630846 acacatgtgattaaattgaattatgtcattttcttaaattattatcggtgt 16630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 39399948 - 39399910
Alignment:
Q  194 ttgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  39399948 ttgaattatgtcattttctaaaaatttcatcggtgtcaa 39399910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 31026739 - 31026698
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggt 227  Q
    ||||||||||||||||||||||||||| ||| | ||||||||    
T  31026739 tgattacattgaattatgtcattttcttaaattattatcggt 31026698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 2356380 - 2356416
Alignment:
Q  193 attgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  2356380 attgaattatgtcattttctcaaaatttgatcagtgt 2356416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 6180874 - 6180910
Alignment:
Q  180 cacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  6180874 cacttatgattacattgaatcatgtcattttctcaaa 6180910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 23354646 - 23354718
Alignment:
Q  165 ccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||||| ||||| |||| | |||||||| | |||||| ||||||||||||| | ||||| |||||| |||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattatctgtgtcagcatgt 23354718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 27288358 - 27288330
Alignment:
Q  63 ttttaactttattttttgttatagaaata 91  Q
    |||||||||||||||||||||||||||||    
T  27288358 ttttaactttattttttgttatagaaata 27288330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 37491872 - 37491908
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatc 224  Q
    |||||||||||||| || |||||||||||||||||||    
T  37491872 attacattgaattaagttattttctcaaaattttatc 37491908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 41033032 - 41033076
Alignment:
Q  54 taaaaacaattttaactttattttttgttatagaaataacttata 98  Q
    ||||||||||||||  ||||| |||||||||||||||| ||||||    
T  41033032 taaaaacaattttatttttatcttttgttatagaaatagcttata 41033076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 49179723 - 49179774
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  49179723 acacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtc 49179774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 15864338 - 15864238
Alignment:
Q  143 acacttctgattgaacgtgtgtccgacactgacac------aacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatg 236  Q
    |||||||| |||||| ||||||||||||  |||||      ||||||  |||||| ||||||||||||||||||||||||| |||||| |||||||||||    
T  15864338 acacttctaattgaaggtgtgtccgacagcgacacgacaccaacactaatgattatattgaattatgtcattttctcaaaactttatccgtgtcaacatg 15864239  T
Q  237 t 237  Q
    |    
T  15864238 t 15864238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 13005479 - 13005409
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttct-caaaattttatcggtgtcaacatgtttgtgtcat 246  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||| |||||||| |||||||| |||||||    
T  13005479 caacacttgtgattatattgaattatgtcattttttaaaaaatttgatcggtgtaaacatgttcgtgtcat 13005409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 225
Target Start/End: Original strand, 14338495 - 14338537
Alignment:
Q  183 ttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  14338495 ttgtgattacattgaattatgtcattttttcaaaattttatcg 14338537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 28590924 - 28590858
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtca 245  Q
    ||||||||||||||||| || | ||| ||||||||||| | ||||||||||||||||||| ||||||    
T  28590924 acacttgtgattacattcaactttgttattttctcaaattattatcggtgtcaacatgttagtgtca 28590858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 12704647 - 12704715
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    ||||||||||| ||||| |||| | ||||||||||||||||||||||||| ||||| | ||||| ||||    
T  12704647 gtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgt 12704715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 25074858 - 25074789
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||| ||||| |||||||| | | |||||||| | |||||||||||||||||||| | |||||||||||    
T  25074858 gtgtcagacaccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatcggtgtc 25074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 27903698 - 27903633
Alignment:
Q  164 tccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||| |||||||||||| |||||||||| |||||| || |||||||||| | ||||| ||||    
T  27903698 tccgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgt 27903633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 34409355 - 34409400
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||||||||||||||||||||||||||| || | ||||||||||    
T  34409355 tgtgattacattgaattatgtcattttctcgaagtattatcggtgt 34409400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 52558141 - 52558182
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  52558141 tgtgattacattgaattatgtccttttctcaaatttttatcg 52558182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 6984812 - 6984764
Alignment:
Q  182 cttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||| |||||||| ||| |||||||||||||||||| ||||||    
T  6984812 cttgtgattatattgaattgtgttattttctcaaaattttattggtgtc 6984764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 9210833 - 9210884
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| ||||||| ||||||||||||||||||||||||| | |||||| ||||    
T  9210833 acacatgtgattccattgaattatgtcattttctcaaattattatcgttgtc 9210884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 25892529 - 25892478
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttct 212  Q
    ||||||||||||||||| |||| | |||||||| |||||||| |||||||||    
T  25892529 gtgtccgacactgacacgacacctatgattacactgaattatatcattttct 25892478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 34307770 - 34307853
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtc 244  Q
    ||||||||||| ||||| |||||| | |||||| |||| ||||| ||||||||||| | ||| |||||||| | |||| |||||    
T  34307770 gtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattattagcggtgtcagcgtgttcgtgtc 34307853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 42076759 - 42076802
Alignment:
Q  181 acttgtgattacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||||||||| ||||||||| || |||||||||    
T  42076759 acttgtgattacattgaattaggtcattttcccacaattttatc 42076802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 52369840 - 52369789
Alignment:
Q  165 ccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||| ||||| |||| | ||||||||||||||||||| |||||||||||    
T  52369840 ccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaa 52369789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 19323456 - 19323526
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtc 249  Q
    |||| |||||||| ||| |||||||||||||||||||| |  |||| ||||| ||||||| ||||| ||||    
T  19323456 acacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtcgacatgttagtgtcgtgtc 19323526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 13799546 - 13799501
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    |||||| | |||||||||||||||||||| | ||||||||||||||    
T  13799546 attacacttaattatgtcattttctcaaactattatcggtgtcaac 13799501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 19730198 - 19730254
Alignment:
Q  159 gtgtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||| |  ||||||| |||||| ||||| ||||||||||||||||||||    
T  19730198 gtgtgtccgacacggt-acaacacatgtgatcacattcaattatgtcattttctcaaa 19730254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 19750788 - 19750844
Alignment:
Q  159 gtgtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||| |  ||||||| |||||| ||||| ||||||||||||||||||||    
T  19750788 gtgtgtccgacaccgt-acaacacatgtgatcacattcaattatgtcattttctcaaa 19750844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 44427892 - 44427855
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  44427892 acacatgtgattacattggattatgtcattttctcaaa 44427855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 16790186 - 16790222
Alignment:
Q  70 tttattttttgttatagaaataacttatatgtaagca 106  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  16790186 tttatcttttgttatagaaataacttatatataagca 16790222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 24399660 - 24399696
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatc 224  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  24399660 attacattgaattatgtcattgtctcaaaaatttatc 24399696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 25652021 - 25652089
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||||| ||||||||||||||| | | | |||| |||||||| ||||||||||||| | ||||| ||||    
T  25652021 gtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgt 25652089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 34909914 - 34909866
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    ||||||||| |||||||||||||| |||||||| | |||||||| ||||    
T  34909914 tgtgattactttgaattatgtcatattctcaaattattatcggtctcaa 34909866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 40017386 - 40017414
Alignment:
Q  188 attacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||    
T  40017386 attacattgaattatgtcattttctcaaa 40017414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 8705 - 8763
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  8705 acacttgtggttacattgaatcatgtcattttctcaaaattttatccatgtcaacatgt 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 225
Target Start/End: Complemental strand, 8999 - 8953
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcg 225  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  8999 acacttgtgattacgttgaattatgtcattttctcaaaattttatcg 8953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 14332454 - 14332395
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtc 244  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| || |||| |||||    
T  14332454 tgtgattacattgaattatgtcattttctc-aaattttatcggtgtcgacttgttagtgtc 14332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 24176890 - 24176820
Alignment:
Q  160 tgtgtccgacactgacacaacacttgtgattacattgaattatgtca-ttttctcaaaattttatcggtgt 229  Q
    ||||||| ||||  |||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  24176890 tgtgtccaacaccaacacgacacttgtgattacattaaatcatgtcatttttctcaaaattttatcggtgt 24176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 40176654 - 40176604
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||||||    
T  40176654 acacatgtgattacattgaatgaagtcattttctcaaaattttatcggtgt 40176604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 40686766 - 40686836
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtc 249  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||| |||| || |||  ||||||||||    
T  40686766 acacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgacgtgtcagtgtcatgtc 40686836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 18946042 - 18946083
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattt 220  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  18946042 acactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 24462280 - 24462329
Alignment:
Q  181 acttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtc 24462329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 42004937 - 42005006
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||| |||||||||| | |||||||| | |||||||||||||||||||| | ||||| |||||    
T  42004937 gtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgtgtc 42005006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 28170432 - 28170382
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||| ||||||||||||||||||||||| |||||||||||| ||||||    
T  28170432 acacttgttattacattgaattatgtcatttt-tcaaaattttattggtgtc 28170382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 29415807 - 29415740
Alignment:
Q  171 ctgacacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtt 238  Q
    |||||||||||| ||||||||   |||||||||||||||||| ||| | ||||| || ||||||||||    
T  29415807 ctgacacaacacatgtgattatgctgaattatgtcattttcttaaattattatcagtttcaacatgtt 29415740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 43966859 - 43966816
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattt 220  Q
    |||||| ||||||||||||||||| | |||||||||||||||||    
T  43966859 caacacatgtgattacattgaattgtatcattttctcaaaattt 43966816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 50233445 - 50233398
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    ||||||||||||||||||||||||||| ||||||| || | |||||||    
T  50233445 tgattacattgaattatgtcattttcttaaaatttaattgatgtcaac 50233398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 3921711 - 3921681
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||||||||||||||||    
T  3921711 tgattacattgaattatgtcattttctcaaa 3921681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 8203873 - 8203835
Alignment:
Q  178 aacacttgtgattacattgaattatgtcattttctcaaa 216  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  8203873 aacacttgtgattacattcacttatgtcattttctcaaa 8203835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 40317832 - 40317882
Alignment:
Q  187 gattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||| ||||||||||| |||||||||||||||||| || |||| ||||||    
T  40317832 gattatattgaattatgccattttctcaaaattttaccgatgtccacatgt 40317882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 40747790 - 40747832
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    ||||||||||||||||||||||||||||| | ||||| |||||    
T  40747790 attacattgaattatgtcattttctcaaattattatccgtgtc 40747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 6936390 - 6936443
Alignment:
Q  161 gtgtccgacactgacacaacacttgtgattacattgaattatgtcattttctca 214  Q
    ||||||||||| ||||| |||| | |||||||| | ||||||||||||||||||    
T  6936390 gtgtccgacacagacacgacacctatgattacacttaattatgtcattttctca 6936443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 7988457 - 7988510
Alignment:
Q  177 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||| ||||||||||||||||||||| ||||| ||| | ||||| |||||    
T  7988457 caacacttatgattacattgaattatgtcactttcttaaattattatcagtgtc 7988510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 11571628 - 11571599
Alignment:
Q  187 gattacattgaattatgtcattttctcaaa 216  Q
    ||||||||||||||||||||||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaa 11571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 33202947 - 33202898
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacat 235  Q
    |||||||||||| |||||||||||| | ||| | ||||||||||||||||    
T  33202947 tgattacattgatttatgtcattttttaaaattattatcggtgtcaacat 33202898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 11412783 - 11412827
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| |||||||||||||||||||||||| | | |||||||||||    
T  11412783 tgatcacattgaattatgtcattttctcatattattatcggtgtc 11412827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 19637812 - 19637768
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||||||||||||| |||||||||||| ||| | |||||||||||    
T  19637812 tgattacattgaataatgtcattttcttaaattattatcggtgtc 19637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 22316422 - 22316390
Alignment:
Q  195 tgaattatgtcattttctcaaaattttatcggt 227  Q
    |||||||||| ||||||||||||||||||||||    
T  22316422 tgaattatgttattttctcaaaattttatcggt 22316390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 29230107 - 29230063
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaa 232  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||    
T  29230107 attacattcaattatgtcattttctcaaattattaccggtgtcaa 29230063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 34184719 - 34184675
Alignment:
Q  179 acacttgtgattacattgaattatgtcattttctcaaaattttat 223  Q
    |||| ||||||||||||||||||| | |||||||||| |||||||    
T  34184719 acacatgtgattacattgaattatattattttctcaagattttat 34184675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 39410683 - 39410639
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaattttatcggtgtcaac 233  Q
    ||||||||||||||||  || || |||||||||||||||||||||    
T  39410683 ttacattgaattatgttgttatcccaaaattttatcggtgtcaac 39410639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 42325601 - 42325561
Alignment:
Q  189 ttacattgaattatgtcattttctcaaaattttatcggtgt 229  Q
    ||||| |||||||||||||||||||||| | ||||||||||    
T  42325601 ttacactgaattatgtcattttctcaaattattatcggtgt 42325561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 240036 - 240114
Alignment:
Q  186 tgattacattgaattatgtcattttctcaaaattttatcggtgtcaacatgtttgtgtcatgtctggtatccgtgtctg 264  Q
    ||||||||||||||||| | ||||||||||| | |||| | |||||||||||  |||||||||| ||| ||||||||||    
T  240036 tgattacattgaattatattattttctcaaattattatagttgtcaacatgtccgtgtcatgtccggtgtccgtgtctg 240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 98
Target Start/End: Original strand, 9868 - 9901
Alignment:
Q  65 ttaactttattttttgttatagaaataacttata 98  Q
    |||| |||||||||||||||||||||||||||||    
T  9868 ttaattttattttttgttatagaaataacttata 9901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 99935 - 99886
Alignment:
Q  188 attacattgaattatgtcattttctcaaaattttatcggtgtcaacatgt 237  Q
    ||||||||||||||||| ||||||| ||| | ||||||||||| ||||||    
T  99935 attacattgaattatgttattttctaaaattattatcggtgtcgacatgt 99886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 7736 - 7704
Alignment:
Q  184 tgtgattacattgaattatgtcattttctcaaa 216  Q
    ||||||| |||||||||||||||||||||||||    
T  7736 tgtgattgcattgaattatgtcattttctcaaa 7704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 98
Target Start/End: Original strand, 104232 - 104260
Alignment:
Q  70 tttattttttgttatagaaataacttata 98  Q
    |||||||||||||||||||||||||||||    
T  104232 tttattttttgttatagaaataacttata 104260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 225271 - 225327
Alignment:
Q  174 acacaacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtc 230  Q
    |||| |||||| | ||||||||| ||||||||||||||||||| | ||||| |||||    
T  225271 acacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtc 225327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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