View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_high_46 (Length: 308)
Name: NF1056_high_46
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_46 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 7303309 - 7303585
Alignment:
| Q |
28 |
cataatggtgggttgagattaatacgtagaaagcttttgacacacttcaatttaccctcctgtg-ttgtcaatcacaagcttttgagagacttcaatcta |
126 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7303309 |
cataatggtgggttgagattaattcgtagaaagcttttgacacacttcaatttaccctccagaggttgccaatcacaagcttttgagagacttcaatcta |
7303408 |
T |
|
| Q |
127 |
tcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttcatca |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7303409 |
tcatccagaggttgcatatcaaagttgatcttttccactctctctttgagaatccgaatatcctccaaaacaatatccaaatcagcaagtgatttcatca |
7303508 |
T |
|
| Q |
227 |
agcannnnnnngcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttgcttct |
303 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7303509 |
agcatttttttgcttcatcaacttctccttcatcaccagtaattgctactacttcctctttatcttcctttacttct |
7303585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University