View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_48 (Length: 304)
Name: NF1056_high_48
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 38 - 295
Target Start/End: Original strand, 14705543 - 14705800
Alignment:
| Q |
38 |
caactgacgcatcttggtcgtctttagttccttagaatccttagttggcaccgtgcttttccagagctgcaaccaaatgaatgtacgatcattacaaacc |
137 |
Q |
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| T |
14705543 |
caactgacacatcttggtcgtctttagttccttagaacccttagttggcaccgtgcttttccagagctgcaaccaaatgaatgtacgatcattacaaacc |
14705642 |
T |
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| Q |
138 |
caatgatatcataaaattgacacacaatcgcaaagaatagtatagggatcggaaattacgattgtgattcagtagcttatcaataagttcaacatgggtc |
237 |
Q |
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| T |
14705643 |
caatgatatcataaaattgacacacaatcgcaaagaaaagtatagggttcagaaattacgattgtaattcagtagcttatcaataagttcaacatgggtc |
14705742 |
T |
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| Q |
238 |
ataagcatgcgcctgcagcaatatcgaaccagccctaaagaatccagtgcatctctgc |
295 |
Q |
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| T |
14705743 |
ataagcatgcgcctgcagcaatatcgaaccagccctaaagaatccagtgcatctctgc |
14705800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 38 - 293
Target Start/End: Original strand, 14713670 - 14713923
Alignment:
| Q |
38 |
caactgacgcatcttggtcgtctttagttcctta-gaatccttagttggcaccgtgcttttccagagctgcaaccaaatgaatgtacgatcattacaaac |
136 |
Q |
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| T |
14713670 |
caactgacacatttcggtcgtctgcagttccttaagactccttaattggcttcatgcttttccatagctgcaaccaaatgaatgtttgatcattacaaac |
14713769 |
T |
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| Q |
137 |
ccaatgatatcataaaattgacacacaatcgcaaagaatagtatagggatcggaaattacgattgtgattcagtagcttatcaataagttcaacatgggt |
236 |
Q |
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| T |
14713770 |
ccagtgatat-agaaaattgacacacatac--atagaatgatatagagatcagaaattactattgtaattcagtagcttctcgataaggtcaacatgggt |
14713866 |
T |
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| Q |
237 |
cataagcatgcgcctgcagcaatatcgaaccagccctaaagaatccagtgcatctct |
293 |
Q |
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| T |
14713867 |
cataagcatacgcctgcagcaatatcggaccaaccccaaagcatccagtgcatctct |
14713923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 295
Target Start/End: Original strand, 28889571 - 28889743
Alignment:
| Q |
117 |
aatgtacgatcattacaaacccaatgatatcataaaattgacacacaatcgcaaagaatagtatagggatcggaaattacgattgtgattcagtagctta |
216 |
Q |
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| T |
28889571 |
aatgtatgatcaatacaaacccaatgacattagaaaatttacacacac------agaatcatatagggatcagaacttactgttatagttcaatagtttc |
28889664 |
T |
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| Q |
217 |
tcaataagttcaacatgggtcataagcatgcgcctgcagcaatatcgaaccagccctaaagaatccagtgcatctctgc |
295 |
Q |
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| T |
28889665 |
tcaatgagatcaacatgggtcataagcatgcgcctgcaacaataccgaaccagacccaacgcatccagtgcatctctgc |
28889743 |
T |
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