View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_high_49 (Length: 299)
Name: NF1056_high_49
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_49 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 62 - 234
Target Start/End: Original strand, 43311673 - 43311845
Alignment:
| Q |
62 |
ctgttgctggatgagcgagtacttggacctgaggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgac |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311673 |
ctgttgctggatgagcgagtacttggacctgaggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgac |
43311772 |
T |
|
| Q |
162 |
caaatcagaaagagagtaatcagatgtctcacccatggttcccttcggtgggggttttcgcagagaccacagg |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43311773 |
caaatcagaaagagagtaatcagatgtctcacccatggttcccttcggtgggggttttcgcagagaccacagg |
43311845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 39487490 - 39487325
Alignment:
| Q |
67 |
gctggatgagcgagtacttggacctgaggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaat |
166 |
Q |
| |
|
||||||||||| |||| |||| |||| | ||||||||||| ||||||||| ||| | ||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
39487490 |
gctggatgagctagtatttgggcctgttgggcccatccaattacccttccaatccctgttgttcgatctaagaatccttcaggtaaaaccgattccaaat |
39487391 |
T |
|
| Q |
167 |
cagaaagagagtaatcagatgtctcacccatggttcccttcggtgggggttttcgcagagaccaca |
232 |
Q |
| |
|
||||||||| ||||||||| | | ||||| |||||||||||| |||||| ||||||||||||| |
|
|
| T |
39487390 |
cagaaagagggtaatcagagggtgaaaccatgattcccttcggtgagggtttacgcagagaccaca |
39487325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 39461251 - 39461160
Alignment:
| Q |
94 |
ggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcaga |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||||| | |||| |||| ||||||||||||||| |
|
|
| T |
39461251 |
ggagcccatccaatgacccttccaatccctgctgtccgatctaagaacccttcgggtaaaaccaagcccaattcagtaagagagtaatcaga |
39461160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 39469935 - 39470073
Alignment:
| Q |
94 |
ggagcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcagatgtctcac |
193 |
Q |
| |
|
|||||||||||||| ||||||||| || |||| | ||||||||| ||||| |||||||| | |||||||||||||| ||||||||||| | || |
|
|
| T |
39469935 |
ggagcccatccaataacccttccaatctcttctgtcctatctaagaatccttctggtaaaaccgaactcaaatcagaaagagggtaatcagatggcgcaa |
39470034 |
T |
|
| Q |
194 |
ccatggttcccttcggtgggggttttcgcagagaccaca |
232 |
Q |
| |
|
||||||| ||||| ||||| ||||| || |||||||||| |
|
|
| T |
39470035 |
ccatggtgcccttaggtggtggtttacgtagagaccaca |
39470073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 39457473 - 39457608
Alignment:
| Q |
97 |
gcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcagatgtctcaccca |
196 |
Q |
| |
|
||||||||||| ||||||||| || ||||| | ||||||||| ||||| |||||||| | |||||||||||||| ||||||||||| | || || |
|
|
| T |
39457473 |
gcccatccaataacccttccaatctctgctgtcctatctaagaatccttctggtaaaaccgaactcaaatcagaaagagtgtaatcagatggcgcattca |
39457572 |
T |
|
| Q |
197 |
tggttcccttcggtgggggttttcgcagagaccaca |
232 |
Q |
| |
|
|||| |||||||||| ||||| || |||||||||| |
|
|
| T |
39457573 |
tggtgtccttcggtggtggtttacgtagagaccaca |
39457608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 39484228 - 39484170
Alignment:
| Q |
127 |
gttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcaga |
185 |
Q |
| |
|
|||||||||||||| |||||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
39484228 |
gttcgatctaagaatccttcaggtaaaaccggacccaaatcataaagagagtaatcaga |
39484170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 230
Target Start/End: Original strand, 39463717 - 39463868
Alignment:
| Q |
79 |
agtacttggacctgaggagcccatccaatgacccttccagtc-ctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagag |
177 |
Q |
| |
|
|||| |||| |||| |||||||| ||||| ||||||||| || ||| | || |||| |||||| ||||| |||||||| | | ||||||||||||| | |
|
|
| T |
39463717 |
agtatttgggcctgtggagcccaaccaatcacccttccaatctcta-cagtccgatataagaatccttcgggtaaaacggaacctaaatcagaaagaggg |
39463815 |
T |
|
| Q |
178 |
taatcagatgtctcacccatggttcccttcggtgggggttttcgcagagacca |
230 |
Q |
| |
|
|||||||||| | || ||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
39463816 |
taatcagatggcgcaatcatggcgccctttggtgggggtttacgtagagacca |
39463868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 29947861 - 29947804
Alignment:
| Q |
242 |
gttcacctggaggtcactaagagaccctttatgggcgaagttgtgcaggctcttaagt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29947861 |
gttcacctggaggtcactaagagaccctttatgggcgaagttgtgcaggctcttaagt |
29947804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 39777018 - 39777054
Alignment:
| Q |
261 |
agagaccctttatgggcgaagttgtgcaggctcttaa |
297 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
39777018 |
agagaccttttatgggagaagttgtgcaggctcttaa |
39777054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University