View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_high_5 (Length: 758)

Name: NF1056_high_5
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_high_5
NF1056_high_5
[»] chr6 (10 HSPs)
chr6 (77-491)||(2425631-2426048)
chr6 (622-743)||(2425414-2425535)
chr6 (312-457)||(2429016-2429163)
chr6 (627-746)||(2428726-2428847)
chr6 (210-266)||(2647459-2647515)
chr6 (210-266)||(2603181-2603234)
chr6 (211-266)||(2679906-2679958)
chr6 (213-299)||(2429258-2429343)
chr6 (210-266)||(2575165-2575218)
chr6 (210-261)||(2445716-2445764)
[»] chr5 (3 HSPs)
chr5 (671-741)||(39664222-39664292)
chr5 (681-727)||(14537162-14537208)
chr5 (682-731)||(14536474-14536523)
[»] chr3 (1 HSPs)
chr3 (671-732)||(19598526-19598587)
[»] chr4 (1 HSPs)
chr4 (681-731)||(51358299-51358349)


Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 77 - 491
Target Start/End: Complemental strand, 2426048 - 2425631
Alignment:
Q  77 tttttagctataagaaaaggaaaacagatacacggatttcatttaactt--aaattaaaagagttaacagattaaataatctatatatttgccttcacca 174  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2426048 tttttagctataagaaaaggaaaacagatacacggatttcgttcaactttcaaattaaaagagttaacagattaaataatctatatatttgccttcgcca 2425949  T
Q  175 atagagttcataattctaatccacagagttcaaaattaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatcagccataca 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2425948 atagagttcataattctaatccacagagttcaaaattaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatcagccataca 2425849  T
Q  275 tagtgg-ctcccttttcttttctaattataggttggcaggacagcagaagagcaaggattnnnnnnntagtttagaacaaacttttaaaatgctagaaaa 373  Q
    | |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  2425848 tggtggccccccttttcttttctaattataggttggcaggacagcagaagagcaaggattaaaaaaatagtttagaacaaacttttaaaatgctagaaaa 2425749  T
Q  374 tatttagtttttactttatttagtggacaatggacacaaaacaaattaatgtgaaatttacttcaatactatgtggaataaatttactttatttagtttt 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2425748 tatttagtttttactttatttagtggacaatggacacaaaacaaactaatgtgaaatttacttcaatactatgtggaataaatttactttatttagtttt 2425649  T
Q  474 tacaaccctttcttttat 491  Q
    ||||||||||||||||||    
T  2425648 tacaaccctttcttttat 2425631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 622 - 743
Target Start/End: Complemental strand, 2425535 - 2425414
Alignment:
Q  622 gtccatttttctccggtgtcatatcttccatctttctctttccgtcaatcatcgtcgcatttgatgttaatatattttcttaattattaacaagttttgt 721  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2425535 gtccatttttctccggtgtcatatcttccatcttcctctttccgtcaatcatcgtcgcatttgatgttaatatattttcttaattattaacaagttttgt 2425436  T
Q  722 tgaaaagatagcacactttgat 743  Q
    ||||||||||||||||||||||    
T  2425435 tgaaaagatagcacactttgat 2425414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 312 - 457
Target Start/End: Complemental strand, 2429163 - 2429016
Alignment:
Q  312 ggacagcagaagagcaaggattnnnnnnntagtttagaacaaacttttaaaatgctagaaaatatttagtttttactttatttagtggacaatggacaca 411  Q
    |||||||| |||||||||||||       |||||||| |||||||||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  2429163 ggacagcaaaagagcaaggattaaaaaaatagtttaggacaaacttttaagatgctagaaaacattttgtttttactgtatttagtggacaatggacaca 2429064  T
Q  412 --aaacaaattaatgtgaaatttacttcaatactatgtggaataaatt 457  Q
      ||||||| |||||| ||||||||| |||||||||||||| ||||||    
T  2429063 ataaacaaactaatgtaaaatttactgcaatactatgtggagtaaatt 2429016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 627 - 746
Target Start/End: Complemental strand, 2428847 - 2428726
Alignment:
Q  627 tttttctccggtgtcatatcttccatctttctctttccgtcaatcatcgtcgcatttgatgttaatatattttctt--aattattaacaagttttgttga 724  Q
    |||||| | |||||||||||||||||||||||||||| ||||| |||||| || ||||||||||||||  ||| ||  |||| ||||||||||  |||||    
T  2428847 tttttcccaggtgtcatatcttccatctttctctttctgtcaaccatcgttgcgtttgatgttaatattattttttaaaatttttaacaagttgcgttga 2428748  T
Q  725 aaagatagcacactttgatatt 746  Q
    ||||||||||||||||||||||    
T  2428747 aaagatagcacactttgatatt 2428726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 2647459 - 2647515
Alignment:
Q  210 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2647459 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctgatca 2647515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 2603181 - 2603234
Alignment:
Q  210 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca 266  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||| ||||    
T  2603181 ttaaaagaaccatttttctttttct---taacattaatggaaacatttttctgatca 2603234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 2679906 - 2679958
Alignment:
Q  211 taaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca 266  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||| ||||    
T  2679906 taaaagaaccatttttctttttct---taacattaatggaaacatttttctgatca 2679958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 213 - 299
Target Start/End: Complemental strand, 2429343 - 2429258
Alignment:
Q  213 aaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca--gccatacatagtggctcccttttcttttctaat 299  Q
    ||||||||||||||||||||||| |   ||||||||||||||||||||| ||||   |||  ||||||||| ||||||||| |||||||    
T  2429343 aaagaaccatttttctttttcttat---cattaatggaaacatttttctgatcaccaccacccatagtggcccccttttctattctaat 2429258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 2575165 - 2575218
Alignment:
Q  210 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttctaatca 266  Q
    ||||||||||||||||||||||||||||||||   |||| |||||||||||| ||||    
T  2575165 ttaaaagaaccatttttctttttcttcttaac---aatgtaaacatttttctgatca 2575218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 2445764 - 2445716
Alignment:
Q  210 ttaaaagaaccatttttctttttcttcttaacattaatggaaacatttttct 261  Q
    ||||||||||||||||||||||   ||||||||||||| |||||||||||||    
T  2445764 ttaaaagaaccatttttctttt---tcttaacattaatagaaacatttttct 2445716  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 671 - 741
Target Start/End: Complemental strand, 39664292 - 39664222
Alignment:
Q  671 catcgtcgcatttgatgttaatatattttcttaattattaacaagttttgttgaaaagatagcacactttg 741  Q
    |||| ||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||    
T  39664292 catcatcgtatttgatgttaatatattctcttaatttttaacaagttttgttgaaaagatagtgcactttg 39664222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 727
Target Start/End: Original strand, 14537162 - 14537208
Alignment:
Q  681 tttgatgttaatatattttcttaattattaacaagttttgttgaaaa 727  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||    
T  14537162 tttgatgttaatatattgtcttaatttttaacaagttatgttgaaaa 14537208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 731
Target Start/End: Original strand, 14536474 - 14536523
Alignment:
Q  682 ttgatgttaatatattttcttaattattaacaagttttgttgaaaagata 731  Q
    |||||| ||||||||| ||||||||||||||||||| ||| |||||||||    
T  14536474 ttgatgctaatatattctcttaattattaacaagttatgtggaaaagata 14536523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 732
Target Start/End: Complemental strand, 19598587 - 19598526
Alignment:
Q  671 catcgtcgcatttgatgttaatatattttcttaattattaacaagttttgttgaaaagatag 732  Q
    |||| ||||||| |||||| ||||||| | |||||| |||||||||| ||||||||||||||    
T  19598587 catcttcgcattcgatgtttatatattctgttaatttttaacaagttgtgttgaaaagatag 19598526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 731
Target Start/End: Complemental strand, 51358349 - 51358299
Alignment:
Q  681 tttgatgttaatatattttcttaattattaacaagttttgttgaaaagata 731  Q
    |||||||||||||||||||||| ||| || ||||||| ||||| |||||||    
T  51358349 tttgatgttaatatattttctttatttttcacaagttgtgttgcaaagata 51358299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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