View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_55 (Length: 278)
Name: NF1056_high_55
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_55 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 66 - 278
Target Start/End: Original strand, 51718444 - 51718662
Alignment:
| Q |
66 |
aattgtatttctacaatattttgagacaactctctcatacattct------ctttgtgtttttacactatcttcatctctctattattttttatcaataa |
159 |
Q |
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| T |
51718444 |
aattgtatttttacaatattttgagacaactctttcatacattctctttctctttgtgcttttacattatcttcatctctctattattttttatcaataa |
51718543 |
T |
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| Q |
160 |
aaagagaaagaatgttgtctagggattgtagtcgtataaatatcgttactcaaaatgaaagtttaaatgtgtgtataaattactacccatttttcttggt |
259 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51718544 |
aaagagagagaatgttgtctagggattgtagtcgtataaatatcgttactcaaaatgaaagtttaaatgtgtgtataaattactacccatttttcttggt |
51718643 |
T |
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| Q |
260 |
gttcaaactacatcgatct |
278 |
Q |
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||||||||||||||||||| |
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| T |
51718644 |
gttcaaactacatcgatct |
51718662 |
T |
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