View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_high_63 (Length: 259)
Name: NF1056_high_63
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_63 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 259
Target Start/End: Original strand, 41920124 - 41920353
Alignment:
| Q |
30 |
gaaatggattgagtttatattattaattggtcactgattttaggtatttattttgaatacaggttaaaaatgaactgccgagtactttcaaggcctaccg |
129 |
Q |
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| T |
41920124 |
gaaatggattgagtttatattattaattggtcactgattttaggtatttattttgaatacaggttaaaaatgaactgccgagtactttcaaggcctaccg |
41920223 |
T |
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| Q |
130 |
ttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttggagattatcagaaacaaggtaagtttaaggttgcttcgttga |
229 |
Q |
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| T |
41920224 |
ttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttggagattattagaaacaaggtaagtttaatgttgcttcgttga |
41920323 |
T |
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| Q |
230 |
attattttcaatctacagtacaaaatatac |
259 |
Q |
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| T |
41920324 |
attattttcaatctacagtacaaaatatac |
41920353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 210
Target Start/End: Complemental strand, 26831149 - 26831029
Alignment:
| Q |
90 |
aggttaaaaatgaactgccgagtactttcaaggcctaccgttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttgga |
189 |
Q |
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| T |
26831149 |
aggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaatgga |
26831050 |
T |
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| Q |
190 |
gattatcagaaacaaggtaag |
210 |
Q |
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| T |
26831049 |
gattgtcacaaacaaggtaag |
26831029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 26784428 - 26784309
Alignment:
| Q |
90 |
aggttaaaaatgaactgccgagtactttcaaggcctaccgttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttgga |
189 |
Q |
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| T |
26784428 |
aggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattatgga |
26784329 |
T |
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| Q |
190 |
gattatcagaaacaaggtaa |
209 |
Q |
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|||| ||| ||||||||||| |
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| T |
26784328 |
gattctcacaaacaaggtaa |
26784309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 209
Target Start/End: Complemental strand, 26817504 - 26817385
Alignment:
| Q |
90 |
aggttaaaaatgaactgccgagtactttcaaggcctaccgttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttgga |
189 |
Q |
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| T |
26817504 |
aggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatgga |
26817405 |
T |
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| Q |
190 |
gattatcagaaacaaggtaa |
209 |
Q |
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|||| | |||| |||||||| |
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| T |
26817404 |
gattcttagaagcaaggtaa |
26817385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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