View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_high_74 (Length: 250)

Name: NF1056_high_74
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_high_74
NF1056_high_74
[»] chr4 (33 HSPs)
chr4 (7-240)||(44362649-44362882)
chr4 (30-93)||(13307883-13307946)
chr4 (138-224)||(35737705-35737791)
chr4 (23-81)||(37496703-37496761)
chr4 (24-88)||(13117429-13117493)
chr4 (23-82)||(28663491-28663549)
chr4 (28-82)||(20119949-20120003)
chr4 (38-88)||(33950150-33950200)
chr4 (30-100)||(35062451-35062520)
chr4 (44-81)||(11797630-11797667)
chr4 (23-68)||(34589721-34589766)
chr4 (24-68)||(18513256-18513300)
chr4 (24-116)||(56049877-56049968)
chr4 (44-75)||(47492399-47492430)
chr4 (33-75)||(10164862-10164904)
chr4 (38-112)||(12895245-12895319)
chr4 (31-88)||(13484030-13484088)
chr4 (38-112)||(28964219-28964293)
chr4 (38-112)||(29205458-29205532)
chr4 (38-75)||(683066-683103)
chr4 (38-75)||(9988707-9988744)
chr4 (30-71)||(10634996-10635037)
chr4 (38-87)||(18783991-18784040)
chr4 (38-95)||(21945517-21945574)
chr4 (44-104)||(31901255-31901316)
chr4 (40-81)||(40224500-40224541)
chr4 (35-68)||(43476811-43476844)
chr4 (38-95)||(48139278-48139335)
chr4 (44-116)||(4157169-4157241)
chr4 (24-68)||(5654606-5654650)
chr4 (38-70)||(8457939-8457971)
chr4 (24-68)||(14465309-14465353)
chr4 (35-75)||(22799901-22799941)
[»] chr3 (17 HSPs)
chr3 (29-112)||(14338454-14338537)
chr3 (24-82)||(49179716-49179774)
chr3 (23-82)||(15864244-15864303)
chr3 (38-112)||(20503479-20503553)
chr3 (24-88)||(6984764-6984828)
chr3 (38-93)||(10954966-10955021)
chr3 (38-88)||(20691333-20691383)
chr3 (38-75)||(17568691-17568728)
chr3 (38-103)||(20141110-20141174)
chr3 (25-70)||(34409355-34409400)
chr3 (38-79)||(42667634-42667675)
chr3 (29-70)||(52558141-52558182)
chr3 (42-82)||(1916772-1916812)
chr3 (24-68)||(25074789-25074833)
chr3 (25-77)||(27903633-27903685)
chr3 (23-75)||(28590872-28590924)
chr3 (38-82)||(44427855-44427899)
[»] chr2 (23 HSPs)
chr2 (25-131)||(43585957-43586063)
chr2 (32-93)||(24067758-24067819)
chr2 (38-116)||(18840980-18841058)
chr2 (28-75)||(13501086-13501133)
chr2 (34-79)||(24067263-24067308)
chr2 (24-88)||(18512137-18512201)
chr2 (25-112)||(18570973-18571060)
chr2 (33-75)||(14450803-14450845)
chr2 (44-112)||(2438690-2438758)
chr2 (37-81)||(8300221-8300265)
chr2 (29-81)||(42665613-42665665)
chr2 (24-75)||(10535767-10535818)
chr2 (27-82)||(33884054-33884109)
chr2 (23-82)||(45000847-45000905)
chr2 (29-79)||(11439800-11439850)
chr2 (30-88)||(37491850-37491908)
chr2 (24-66)||(40681982-40682024)
chr2 (24-69)||(26787812-26787857)
chr2 (38-83)||(36587603-36587648)
chr2 (38-70)||(13558774-13558806)
chr2 (25-81)||(14373429-14373485)
chr2 (24-116)||(21091723-21091815)
chr2 (31-75)||(37211893-37211937)
[»] chr8 (16 HSPs)
chr8 (25-83)||(27733848-27733906)
chr8 (24-122)||(42874522-42874620)
chr8 (24-75)||(26915248-26915299)
chr8 (24-123)||(34073938-34074037)
chr8 (24-82)||(24295138-24295196)
chr8 (24-75)||(10497824-10497875)
chr8 (30-67)||(6960692-6960729)
chr8 (34-75)||(31119097-31119138)
chr8 (44-111)||(45208406-45208473)
chr8 (23-82)||(10002164-10002224)
chr8 (38-86)||(31586274-31586322)
chr8 (38-85)||(4298884-4298931)
chr8 (24-83)||(31548293-31548352)
chr8 (30-75)||(2652345-2652389)
chr8 (25-74)||(22600530-22600579)
chr8 (44-112)||(31557016-31557084)
[»] chr6 (27 HSPs)
chr6 (23-77)||(10031569-10031623)
chr6 (23-82)||(19369816-19369875)
chr6 (28-131)||(32225342-32225445)
chr6 (29-87)||(6751878-6751936)
chr6 (23-130)||(1334660-1334767)
chr6 (24-75)||(5579654-5579705)
chr6 (27-87)||(16503678-16503738)
chr6 (30-130)||(26402633-26402735)
chr6 (38-116)||(34595148-34595226)
chr6 (29-82)||(22745962-22746015)
chr6 (29-66)||(29959180-29959217)
chr6 (25-70)||(31430281-31430326)
chr6 (24-92)||(7377979-7378047)
chr6 (27-87)||(16516944-16517004)
chr6 (24-82)||(785456-785515)
chr6 (24-75)||(20809643-20809694)
chr6 (38-93)||(28715309-28715364)
chr6 (38-88)||(10157998-10158048)
chr6 (43-97)||(18612640-18612694)
chr6 (68-130)||(26178527-26178589)
chr6 (33-75)||(31327824-31327866)
chr6 (50-112)||(32978870-32978932)
chr6 (42-88)||(34057972-34058018)
chr6 (24-70)||(34868170-34868216)
chr6 (38-103)||(4864077-4864142)
chr6 (48-89)||(20663508-20663549)
chr6 (22-107)||(32511642-32511727)
[»] chr7 (28 HSPs)
chr7 (43-130)||(25956464-25956550)
chr7 (25-103)||(5937401-5937479)
chr7 (44-112)||(7973094-7973162)
chr7 (24-82)||(1885573-1885631)
chr7 (30-82)||(48964063-48964115)
chr7 (23-82)||(35238185-35238244)
chr7 (31-75)||(2144547-2144591)
chr7 (25-81)||(22801743-22801799)
chr7 (42-88)||(10893864-10893910)
chr7 (38-112)||(21880166-21880240)
chr7 (31-88)||(36196787-36196844)
chr7 (30-75)||(37820086-37820131)
chr7 (23-68)||(38134421-38134466)
chr7 (34-70)||(2143866-2143902)
chr7 (27-87)||(13094709-13094769)
chr7 (26-82)||(31808510-31808566)
chr7 (23-75)||(44317294-44317346)
chr7 (38-89)||(37775996-37776047)
chr7 (38-81)||(44172892-44172935)
chr7 (38-88)||(10893342-10893392)
chr7 (38-88)||(38143237-38143287)
chr7 (24-80)||(16827639-16827696)
chr7 (24-112)||(598208-598296)
chr7 (44-88)||(1745185-1745229)
chr7 (42-98)||(3554491-3554547)
chr7 (38-90)||(25481916-25481968)
chr7 (44-88)||(36013793-36013837)
chr7 (31-75)||(43243084-43243128)
[»] scaffold0024 (1 HSPs)
scaffold0024 (24-81)||(18110-18167)
[»] chr5 (22 HSPs)
chr5 (33-88)||(16207586-16207641)
chr5 (23-88)||(19167571-19167637)
chr5 (24-73)||(30080511-30080560)
chr5 (11-130)||(7621183-7621308)
chr5 (23-75)||(21319953-21320005)
chr5 (24-82)||(28296328-28296386)
chr5 (24-61)||(309158-309195)
chr5 (27-68)||(26205775-26205816)
chr5 (26-75)||(38784808-38784857)
chr5 (24-68)||(2577195-2577239)
chr5 (23-71)||(9031937-9031985)
chr5 (24-112)||(27932235-27932323)
chr5 (24-112)||(28588645-28588733)
chr5 (31-70)||(42192283-42192322)
chr5 (31-81)||(10010561-10010611)
chr5 (23-76)||(8044287-8044340)
chr5 (27-68)||(11596470-11596511)
chr5 (38-111)||(23012380-23012453)
chr5 (24-81)||(38749565-38749622)
chr5 (40-84)||(10009842-10009886)
chr5 (22-74)||(15294929-15294981)
chr5 (30-78)||(38548597-38548645)
[»] scaffold0314 (1 HSPs)
scaffold0314 (29-83)||(8953-9007)
[»] chr1 (28 HSPs)
chr1 (25-75)||(24176820-24176871)
chr1 (24-110)||(19637768-19637854)
chr1 (38-112)||(22515858-22515932)
chr1 (23-112)||(33202902-33202991)
chr1 (24-70)||(14332409-14332454)
chr1 (25-75)||(40176604-40176654)
chr1 (34-75)||(18946042-18946083)
chr1 (24-73)||(24462280-24462329)
chr1 (38-95)||(38078649-38078706)
chr1 (24-89)||(41877464-41877529)
chr1 (44-112)||(1815277-1815345)
chr1 (24-88)||(7988446-7988510)
chr1 (34-82)||(43966816-43966864)
chr1 (35-82)||(7888106-7888153)
chr1 (24-75)||(28170382-28170432)
chr1 (38-81)||(32461465-32461508)
chr1 (38-93)||(40258923-40258978)
chr1 (24-75)||(40686766-40686817)
chr1 (38-76)||(8203835-8203873)
chr1 (38-80)||(8204002-8204044)
chr1 (38-112)||(8842685-8842759)
chr1 (38-116)||(18190075-18190153)
chr1 (24-77)||(42004953-42005006)
chr1 (44-89)||(50195459-50195504)
chr1 (25-65)||(6895111-6895151)
chr1 (42-82)||(31667443-31667483)
chr1 (23-87)||(39410641-39410705)
chr1 (38-66)||(41017421-41017449)
[»] scaffold0504 (1 HSPs)
scaffold0504 (30-75)||(8705-8750)
[»] scaffold0036 (1 HSPs)
scaffold0036 (72-112)||(9707-9747)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 44362649 - 44362882
Alignment:
Q  7 cacagacatggacacctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  44362649 cacagacatggacacctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcg 44362748  T
Q  107 ggacacaccttaaatcaggagtgttagctcccatcaattccatttccataagtttacacttccctaattgcttccacttaactcaattgccccatactac 206  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44362749 ggacacaccttaaatcagaagtgtcagctcccatcaattccatttccataagtttacacttccctaattgcttccacttaactcaattgccccatacttc 44362848  T
Q  207 actccttcctttcctaaagttcgatcttaggtct 240  Q
    |||||||||||||||||||||| |||||||||||    
T  44362849 actccttcctttcctaaagttcaatcttaggtct 44362882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 13307883 - 13307946
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacac 93  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgacac 13307946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 224
Target Start/End: Original strand, 35737705 - 35737791
Alignment:
Q  138 catcaattccatttccataagtttacacttccctaattgcttccacttaactcaattgccccatactacactccttcctttcctaaa 224  Q
    |||||||||| ||| ||||||||||||| | ||| ||||| |||||||||||||| | |||| |||||||| |||||||| ||||||    
T  35737705 catcaattccctttacataagtttacacatgcctcattgcctccacttaactcaaatcccccttactacaccccttccttacctaaa 35737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 37496703 - 37496761
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||    
T  37496703 tgacaccgataattttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 37496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 13117429 - 13117493
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||| ||||||||| |||||||||||| |||| ||||||||||||||||| |||||| |||||    
T  13117429 gacaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcggacac 13117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 28663491 - 28663549
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||| |||||||||||||||||||||||||||| ||||||| | | ||||||||||||    
T  28663491 tgacacggataaaattttgagaaaatgacataattcaatgtaaacgc-agtgttggtgtc 28663549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 20119949 - 20120003
Alignment:
Q  28 ccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||| | ||||||||||||| ||||||||||||||||||| ||||| |||||    
T  20119949 ccgataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgtc 20120003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 33950150 - 33950200
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||||||||| ||||||||||||||||||| | |||| ||||||||||||    
T  33950150 tttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacac 33950200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 35062451 - 35062520
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcgg 100  Q
    ||||||||||||| ||||| | |||||| |||||||||| |||||||||||||  ||||||||||| ||||    
T  35062451 gataaaattttga-aaaataatataattcaatgtaatcataagtgttggtgtctaacacgacacatgtcgg 35062520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 11797667 - 11797630
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    |||||||||||||||||||||||||||||||| |||||    
T  11797667 aaaatgacataatttaatgtaatcacaagtgtcggtgt 11797630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 34589766 - 34589721
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||    
T  34589766 tgacaccgataacaatttgagaaaatgacataattcaatgtaatca 34589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 18513300 - 18513256
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||||||||| | |||||||||||||||||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatca 18513256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 56049877 - 56049968
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||||||||| | ||||||||| ||||||| || |||||||||| | |||| ||||||||||| || || |||| |||| | ||||||||||    
T  56049877 gacaccgataataatttgagaaa-tgacatagttcaatgtaatcatatgtgtcggtgtcagacatgatacgtatccgacaccaggacacacct 56049968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 47492399 - 47492430
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||||||||||||||||    
T  47492399 aaaatgacataatttaatgtaatcacaagtgt 47492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 10164904 - 10164862
Alignment:
Q  33 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 12895319 - 12895245
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| ||||| |||||||||  |||||| | |||||| |||||| |||||||||  |||| |||||||||||||    
T  12895319 tttgaaaaaatcacataattttgtgtaattataagtgtcggtgtcggacacgacatgtatccgacatcgggacac 12895245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 13484030 - 13484088
Alignment:
Q  31 ataaaattttgagaaaatgacataatt-taatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||| ||||||||  |||||||||||||||||  ||||| |||||    
T  13484030 ataaaattttgagaaaataacataattcaaatgtaatcacaagtgtcagtgtcggacac 13484088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 28964293 - 28964219
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| ||||| |||||||| | |||||| ||||||||  ||||| ||||||||||||||| ||||  |||||||    
T  28964293 tttgaaaaaatcacataattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacactgggacac 28964219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 29205458 - 29205532
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| ||||| |||||||| | |||||| |||||||| |||||  |||||||||||| || |||| ||||||||    
T  29205458 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 683066 - 683103
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  683066 tttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 9988744 - 9988707
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  9988744 tttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 10634996 - 10635037
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaa 71  Q
    ||||||||||||| |||||||||||||| ||||| |||||||    
T  10634996 gataaaattttgaaaaaatgacataattcaatgttatcacaa 10635037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 18783991 - 18784040
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    |||||||||||||  ||||| |||||||| ||| ||||||||||||||||    
T  18783991 tttgagaaaatgaagtaattgaatgtaattacacgtgttggtgtcagaca 18784040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 21945517 - 21945574
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacat 95  Q
    ||||| |||||||||||||| | |||||| |||||||| |||||| |||| |||||||    
T  21945517 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacat 21945574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 31901316 - 31901255
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagaca-cgacacatatcggacat 104  Q
    |||||| ||||||| |||||||||||| ||| ||||||| |||| |||||||| ||||||||    
T  31901316 aaaatggcataattgaatgtaatcacatgtgctggtgtcggacaccgacacatgtcggacat 31901255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 40224541 - 40224500
Alignment:
Q  40 tgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||||||||||||||||||||||||||| | |||| |||||    
T  40224541 tgagaaaatgacataatttaatgtaatcatatgtgtcggtgt 40224500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 43476811 - 43476844
Alignment:
Q  35 aattttgagaaaatgacataatttaatgtaatca 68  Q
    |||||||||| |||||||||||||||||||||||    
T  43476811 aattttgagagaatgacataatttaatgtaatca 43476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 48139278 - 48139335
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacat 95  Q
    ||||||| |||  |||||||||||||||| | | |||||| |||||||||||||||||    
T  48139278 tttgagataatctcataatttaatgtaattatatgtgttgatgtcagacacgacacat 48139335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 4157169 - 4157241
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||| |||||||||| || ||| |||||||| |||||| |||||||||||| || |||| || || ||||||    
T  4157169 aaaatcacataatttagtgcaattacaagtgtcggtgtcggacacgacacatgtccgacaccgagaaacacct 4157241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 5654650 - 5654606
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||| ||||| | |||||||||||||||||||| ||||||||||    
T  5654650 gacactgataataatttgagaaaatgacataattcaatgtaatca 5654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 8457939 - 8457971
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||||||||||||||| ||||||||||||    
T  8457939 tttgagaaaatgacataattgaatgtaatcaca 8457971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 14465353 - 14465309
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||||||||| | |||||||||||||||||||| ||| ||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatca 14465309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 22799941 - 22799901
Alignment:
Q  35 aattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcacacgtgt 22799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 14338537 - 14338454
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    |||||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||| ||||||||    
T  14338537 cgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 49179774 - 49179716
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||    
T  49179774 gacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtc 49179716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 15864244 - 15864303
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||| |||||| ||||||||||||||||||||| ||| ||||||  ||||||||||||    
T  15864244 tgacacggataaagttttgagaaaatgacataattcaatataatcattagtgttggtgtc 15864303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 20503479 - 20503553
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| |||||||||||||| | |||||| |||||||| |||||  |||||||||||| || |||| ||||||||    
T  20503479 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacac 20503553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 6984764 - 6984828
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||| |||||||||||||||||| ||| |||| ||| |||||||||| || |||||| |||||    
T  6984764 gacaccaataaaattttgagaaaataacacaattcaatataatcacaagagtcggtgtcggacac 6984828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 10954966 - 10955021
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacac 93  Q
    ||||| ||||| |||||||| | ||||||||||||||| |||||| ||||||||||    
T  10954966 tttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacacgacac 10955021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 20691333 - 20691383
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||||| | |||||||| | |||| ||||||||||||    
T  20691333 tttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 17568728 - 17568691
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  17568728 tttgagaaaattacataatttaatgtaattacaagtgt 17568691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 20141110 - 20141174
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggaca 103  Q
    ||||||||| |||||||||| |||||||||| | |||| | |||||||||||| ||||||| ||||    
T  20141110 tttgagaaactgacataattgaatgtaatcatatgtgtcg-tgtcagacacgatacatatctgaca 20141174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 34409400 - 34409355
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||||| | || ||||||||||||||||| ||||||||||||    
T  34409400 acaccgataatacttcgagaaaatgacataattcaatgtaatcaca 34409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 42667634 - 42667675
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggt 79  Q
    |||||||||||||||||||||||| |||||||| | ||||||    
T  42667634 tttgagaaaatgacataatttaatataatcacacgcgttggt 42667675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 52558182 - 52558141
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||| |||||||||| ||||||||| ||||||||||||    
T  52558182 cgataaaaatttgagaaaaggacataattcaatgtaatcaca 52558141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 1916772 - 1916812
Alignment:
Q  42 agaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  1916772 agaaattgacaaaatttaatgtaatcacatgtgttggtgtc 1916812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 25074789 - 25074833
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||||||||| | |||||||||||||||||||| | ||||||||    
T  25074789 gacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 27903633 - 27903685
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttg 77  Q
    |||| ||||| | |||||||||| || ||||||||||||||||| ||||||||    
T  27903633 acacagataataatttgagaaaacgatataatttaatgtaatcataagtgttg 27903685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 28590872 - 28590924
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||| | ||||||||||| ||| | || |||||||||||||||||    
T  28590872 tgacaccgataataatttgagaaaataacaaagttgaatgtaatcacaagtgt 28590924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 44427855 - 44427899
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||||||||||  |||||||||||| |||| ||||||    
T  44427855 tttgagaaaatgacataatccaatgtaatcacatgtgtcggtgtc 44427899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 43586063 - 43585957
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatcag 124  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| || | || ||||   ||||||||||| ||||||    
T  43586063 acacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcag 43585964  T
Q  125 gagtgtt 131  Q
     ||||||    
T  43585963 aagtgtt 43585957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 24067758 - 24067819
Alignment:
Q  32 taaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacac 93  Q
    |||||||||||||||||| ||||||| |||| |||||||||||| |||||||||||||||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggtgtcagacacgacac 24067819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 18841058 - 18840980
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||| ||||| |||||||| | |||||| |||||||| ||||||||||||||||||| || |||| ||||||||||||    
T  18841058 tttgaaaaaattacataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacct 18840980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 13501133 - 13501086
Alignment:
Q  28 ccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  13501133 ccgataaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 24067263 - 24067308
Alignment:
Q  34 aaattttgagaaaatgacataatttaatgtaatcacaagtgttggt 79  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgttggt 24067308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 18512201 - 18512137
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||| ||||  |||||| ||||    
T  18512201 gacaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtcagtgtcacacac 18512137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 18570973 - 18571060
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    |||||||||| | |||||||||||||||||||| |||||||||| | ||||  |||||  |||||| ||||||| |||| | ||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgaacacgatacatatccgacaccaggacac 18571060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 75
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  33 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 2438758 - 2438690
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| |||||||| | |||||| |||||||| |||||| |||||||||||| || |||| ||||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacac 2438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8300265 - 8300221
Alignment:
Q  37 ttttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    
T  8300265 ttttgagaaaatgacataatttagtgtaatcataagtgtcggtgt 8300221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 42665613 - 42665665
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    |||||||||||||| || ||||||| ||| |||||||||||| ||||||||||    
T  42665613 cgataaaattttgaaaagatgacatgattcaatgtaatcacatgtgttggtgt 42665665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 10535818 - 10535767
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||| | |||||||||||||||||||| | |||||||| ||||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 33884054 - 33884109
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||| |||||||||||||| ||| | |||||| |||||||| ||||||    
T  33884054 accgataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggtgtc 33884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 45000905 - 45000847
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||| | |||| ||||||    
T  45000905 tgacaccgataaaattt-gagaaaatgacacaattcaatgtaatcatatgtgtcggtgtc 45000847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 11439800 - 11439850
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggt 79  Q
    |||||||||| ||||||||| |||||||| | ||||||||||||| |||||    
T  11439800 cgataaaattatgagaaaataacataattcagtgtaatcacaagtattggt 11439850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 37491908 - 37491850
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||||||||||||||||| || ||||| |||||||| | | |||| ||||||||||||    
T  37491908 gataaaattttgagaaaataacttaattcaatgtaattaaatgtgtcggtgtcagacac 37491850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 40681982 - 40682024
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaat 66  Q
    ||||||||||| | |||||||||||||||||||| ||||||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaat 40682024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 26787857 - 26787812
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcac 69  Q
    |||||| |||||| ||||||||||||||||||||  ||||||||||    
T  26787857 gacaccaataaaaatttgagaaaatgacataattcgatgtaatcac 26787812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 36587648 - 36587603
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtca 83  Q
    ||||||||||||||||||||| |||||| || | ||||||||||||    
T  36587648 tttgagaaaatgacataatttgatgtaaacatatgtgttggtgtca 36587603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 13558806 - 13558774
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcaca 70  Q
    ||||||||||||||||||||||||| |||||||    
T  13558806 tttgagaaaatgacataatttaatgcaatcaca 13558774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 14373485 - 14373429
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||| ||||||||||||   |||||||||||| |||||||||||| |||| |||||    
T  14373485 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 14373429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 21091723 - 21091815
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||||| ||| | ||| ||||||| ||||| || | |||||| ||||||||  |||||||||| | ||| | ||||||| ||||||||||||    
T  21091723 gacaccgctaataatttaagaaaataacatacttcagtgtaattacaagtgtcagtgtcagacaagccacctgtcggacaccgggacacacct 21091815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 37211937 - 37211893
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||| |||||||||||| |||| |||||||| ||||||||    
T  37211937 ataaaatttcgagaaaatgacacaattcaatgtaattacaagtgt 37211893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 27733848 - 27733906
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtca 83  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  27733848 acaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtca 27733906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 42874522 - 42874620
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatc 122  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||||  ||||  ||||| |||||| |||||||||| ||||| |||| ||||    
T  42874522 gacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaacacatgtcggacatcgagacacgccttcaatc 42874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 26915299 - 26915248
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26915299 gacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 34074037 - 34073938
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatca 123  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||| | | ||||||||| ||| | ||| |||||  ||||| |||| |||||    
T  34074037 gacaccgataaaattttgaaaaaatgacataatttaatgtaatcataagtgtcgatatcagacacgtcacgtgtcgcacatcatgacacgccttcaatca 34073938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 24295196 - 24295138
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||| |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  24295196 gacatcgataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgtc 24295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 10497875 - 10497824
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  10497875 gacacggataaaattttgagaaaataacataatttgatgtaatcacaagtgt 10497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 6960729 - 6960692
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatc 67  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6960729 gataaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 31119097 - 31119138
Alignment:
Q  34 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 45208473 - 45208406
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggaca 111  Q
    ||||||||||||||||||||||| |||||| | ||| | ||||| ||||||||||| | |||||||||    
T  45208473 aaaatgacataatttaatgtaattacaagtatcggtattagacatgacacatatcgaatatcgggaca 45208406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 10002224 - 10002164
Alignment:
Q  23 tgacaccgataaaattttgagaaaa-tgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||| | ||||| |||| ||||||||||||||||||||||| |||| ||||||    
T  10002224 tgacaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgtcggtgtc 10002164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 31586322 - 31586274
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagac 86  Q
    ||||||||||||| ||||| ||||||||||||| |||| ||||||||||    
T  31586322 tttgagaaaatgatataatataatgtaatcacacgtgtcggtgtcagac 31586274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 4298931 - 4298884
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcaga 85  Q
    ||||| ||||| ||||||||||||||||| |||||||| |||||||||    
T  4298931 tttgaaaaaatcacataatttaatgtaattacaagtgtcggtgtcaga 4298884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 31548352 - 31548293
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtca 83  Q
    |||||||||||   ||||| |||||||||||||| |||||||||||| |||| |||||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtca 31548293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 2652345 - 2652389
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||    
T  2652345 gataaattttttagaaaatgacataa-ttaatgtaatcacaagtgt 2652389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 22600530 - 22600579
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtg 74  Q
    ||||| |||||||||  |||||||||||||||| ||| ||||||||||||    
T  22600530 acaccaataaaatttaaagaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 31557016 - 31557084
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| |||||||| | |||||| |||||| | ||||||||||||||||||| || |||| | ||||||    
T  31557016 aaaatcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacac 31557084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 10031569 - 10031623
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttg 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10031569 tgacaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgttg 10031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 19369816 - 19369875
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19369816 tgacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtc 19369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Complemental strand, 32225445 - 32225342
Alignment:
Q  28 ccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatcaggag 127  Q
    ||||||||||||||||||||| || | | | |||||||||||| |||| |||||| |||||||| | | ||||||| | ||||||||||| |||||||||    
T  32225445 ccgataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggag 32225346  T
Q  128 tgtt 131  Q
    ||||    
T  32225345 tgtt 32225342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 6751936 - 6751878
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  6751936 cgataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggaca 6751878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 1334660 - 1334767
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatc 122  Q
    |||||| ||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||  ||||||  | | ||| ||| | ||||||||||| ||||    
T  1334660 tgacacggataaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatc 1334759  T
Q  123 aggagtgt 130  Q
    || |||||    
T  1334760 agaagtgt 1334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 5579654 - 5579705
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||||||||||||||| || |||||| ||||||||||    
T  5579654 gacaccgataaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 16503678 - 16503738
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    |||||||||||||||||||||  | |||||| ||||||||||| |||||||||||| ||||    
T  16503678 accgataaaattttgagaaaactatataattcaatgtaatcactagtgttggtgtccgaca 16503738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 26402735 - 26402633
Alignment:
Q  30 gataaaattttgagaaaa--tgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatcaggag 127  Q
    ||||||||||||| ||||  |||||||||| | ||||||||||||||| |||||| ||||||| |||| | ||||| || |||||  ||| |||||| ||    
T  26402735 gataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaag 26402636  T
Q  128 tgt 130  Q
    |||    
T  26402635 tgt 26402633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 34595148 - 34595226
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||| ||||| |||||||| | |||||| |||||||| |||||| |||||||||| | || |||| ||||||||||||    
T  34595148 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacct 34595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 22745962 - 22746015
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||||||||||||  ||| || ||||||||||||||||| ||||||    
T  22745962 cgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtc 22746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 29959180 - 29959217
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaat 66  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  29959180 cgataaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 31430281 - 31430326
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  31430281 acaccaataaaattttgagaaaatgacatgattaaatgtaatcaca 31430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 7377979 - 7378047
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgaca 92  Q
    ||||||| ||||| ||||||||||| |||||||| |||||||| | | |||| |||||| |||||||||    
T  7377979 gacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 16516944 - 16517004
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    |||||||||||||||||||||  | |||||| ||||||||||| ||||| |||||| ||||    
T  16516944 accgataaaattttgagaaaactatataattcaatgtaatcactagtgtcggtgtccgaca 16517004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 785515 - 785456
Alignment:
Q  24 gacaccgataaaattttgagaa-aatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||| ||||||||||| | || |||||||||||| ||||||||||||||||| ||||||    
T  785515 gacactgataaaattttcaaaataatgacataattcaatgtaatcacaagtgtcggtgtc 785456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 20809643 - 20809694
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||| ||| | ||||||| ||| ||||||||||||||    
T  20809643 gacaccgataaaattttgaaaaattaacataatctaaggtaatcacaagtgt 20809694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Original strand, 28715309 - 28715364
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacac 93  Q
    ||||| |||||||||||||| | |||||| |||||||| |||||| ||||||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacac 28715364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 10157998 - 10158048
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||||| |||||||||||| |||| |||  |||||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgtcggtaccagacac 10158048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 18612640 - 18612694
Alignment:
Q  43 gaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatat 97  Q
    ||||||| ||||||| |||||||||| | |||||||||||||| |||| ||||||    
T  18612640 gaaaatgtcataattcaatgtaatcatatgtgttggtgtcagatacgatacatat 18612694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 26178527 - 26178589
Alignment:
Q  68 acaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatcaggagtgt 130  Q
    |||||| | |||||| |||||||||| | ||||||||||||||| ||||| |||||| |||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgt 26178589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 31327824 - 31327866
Alignment:
Q  33 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||    
T  31327824 aaaattttaagaaaattacataatttaatgcaatcacaagtgt 31327866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 32978932 - 32978870
Alignment:
Q  50 acataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    |||||||| | |||||| |||||||| |||||| |||||||||||| || |||| ||||||||    
T  32978932 acataattaagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacac 32978870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 34057972 - 34058018
Alignment:
Q  42 agaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||| | |||||||||| |||| ||||||||||||    
T  34057972 agaaaatgacataattgactgtaatcacatgtgtcggtgtcagacac 34058018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 34868216 - 34868170
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    ||||||||||||||||||||| |||  ||||||| ||||||||||||    
T  34868216 gacaccgataaaattttgagagaatatcataattcaatgtaatcaca 34868170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 4864077 - 4864142
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggaca 103  Q
    ||||| |||||||||||||||||| |||| | | ||||||||||| ||||| | ||||||| ||||    
T  4864077 tttgaaaaaatgacataatttaatttaattatatgtgttggtgtcggacacaatacatatctgaca 4864142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 20663508 - 20663549
Alignment:
Q  48 tgacataatttaatgtaatcacaagtgttggtgtcagacacg 89  Q
    |||||||||| |||| ||||||||||||||||||| ||||||    
T  20663508 tgacataattgaatgcaatcacaagtgttggtgtctgacacg 20663549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 32511727 - 32511642
Alignment:
Q  22 ctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgg 107  Q
    ||||||||| ||| | ||| ||||||| |||||||| | |||||| | ||||||||||||| || |||||| || || ||||||||    
T  32511727 ctgacaccgctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtcggatacgacatatgtctgacatcgg 32511642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 25956464 - 25956550
Alignment:
Q  43 gaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacaccttaaatcaggagtgt 130  Q
    ||||||||||||||| ||||||||||||||||| |||||| ||||||| |||| ||||||| |||||||| |||| |||||| |||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgt 25956550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 5937479 - 5937401
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggaca 103  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||  ||||| | ||||| |||| |||||||    
T  5937479 acacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggaca 5937401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 112
Target Start/End: Complemental strand, 7973162 - 7973094
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| ||||||||||||||||| |||| ||||||||| ||||||||||||| || |||||||||||||    
T  7973162 aaaatcacataatttaatgtaattacaaatgttggtgtgagacacgacacatgtccgacatcgggacac 7973094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 1885573 - 1885631
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||    
T  1885573 gacacggataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtc 1885631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 48964115 - 48964063
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||    
T  48964115 gataaaattgtgagaaaatgacataattcaatttaatcacaagtgttggtgtc 48964063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 35238244 - 35238185
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||| ||||| |||||    
T  35238244 tgacaccgataatattttgagaaaatgacataattcaatataatcacacgtgttagtgtc 35238185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 2144591 - 2144547
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 22801799 - 22801743
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||||||||| |||||    
T  22801799 acaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 22801743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 10893910 - 10893864
Alignment:
Q  42 agaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||| |||||||||||| ||||||||||| |||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtgttggtgtctgacac 10893864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 21880166 - 21880240
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||||||||| |||||||| | |||||| |||||||| |||||| |||||||||||| || |||| | ||||||    
T  21880166 tttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacac 21880240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 36196787 - 36196844
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||  |||||||| ||  ||||||||||||||||||||| ||||    
T  36196787 ataaaattttgagaaaacaacataattcaacataatcacaagtgttggtgtcaaacac 36196844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 37820086 - 37820131
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||| ||||| |||||||||||||||||| |||||||    
T  37820086 gataaaattttgaaaaaataacataatttaatgtaatcgcaagtgt 37820131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 38134466 - 38134421
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||    
T  38134466 tgacaccgataataatttgagaaaatgacataattcaatgtaatca 38134421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 2143902 - 2143866
Alignment:
Q  34 aaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||||||||||||||||||| ||||||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcaca 2143866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 13094769 - 13094709
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    |||||||||||||||||||||  | |||||| ||||||||||| ||||| |||||| ||||    
T  13094769 accgataaaattttgagaaaactatataattcaatgtaatcactagtgtcggtgtccgaca 13094709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 31808566 - 31808510
Alignment:
Q  26 caccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||| | ||||||||||||||| || | |||||||||||| |||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtc 31808510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 44317346 - 44317294
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||| ||||||||||| | |||||||||||||| |||||||||| ||||||    
T  44317346 tgacactgataaaattttaaaaaaatgacataattcaatgtaatcataagtgt 44317294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 37775996 - 37776047
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacg 89  Q
    |||||||||||||||||||| |||||||||||| ||||  |||| |||||||    
T  37775996 tttgagaaaatgacataattaaatgtaatcacatgtgtcagtgtaagacacg 37776047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 44172935 - 44172892
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||    
T  44172935 tttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 10893392 - 10893342
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||||| ||||||||| || |||||||| || |||||    
T  10893392 tttgagaaaatgacataattgaatgtaatcgcatgtgttggtatcggacac 10893342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 38143237 - 38143287
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||| ||||| ||||||||||||||||| | | |||||||||||||||||    
T  38143237 tttgaaaaaatcacataatttaatgtaattatatgtgttggtgtcagacac 38143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 16827639 - 16827696
Alignment:
Q  24 gacaccgataaa-attttgagaaaatgacataatttaatgtaatcacaagtgttggtg 80  Q
    |||||||||||| | |||||| ||||||||| ||| |||||||||||| |||||||||    
T  16827639 gacaccgataaataatttgagcaaatgacatgattcaatgtaatcacatgtgttggtg 16827696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 598208 - 598296
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||||| ||| | ||| ||||||| || ||||| ||||||||   |||||| ||||||||||||||||| | || |||| ||||||||    
T  598208 gacaccgctaataatttaagaaaatcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacac 598296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 1745185 - 1745229
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||| ||||||| |||| ||||||| |||||||||||||||||    
T  1745185 aaaatggcataattgaatggaatcacatgtgttggtgtcagacac 1745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 3554547 - 3554491
Alignment:
Q  42 agaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatc 98  Q
    ||||||| ||||||||||||||||| | |  ||| |||||| |||||||||||||||    
T  3554547 agaaaattacataatttaatgtaattatagatgtcggtgtcggacacgacacatatc 3554491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 25481916 - 25481968
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacga 90  Q
    ||||| ||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  25481916 tttgaaaaaatcacataattcagtgtaattacaagtgttggtgtcggacacga 25481968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 36013837 - 36013793
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||| |||||||||||| |||| ||||||| ||||    
T  36013837 aaaatgacataattcaatgtaatcacacgtgtcggtgtcaaacac 36013793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 43243084 - 43243128
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||| ||||| |||| ||||||||||||||||| ||||||||    
T  43243084 ataaaatgttgaggaaataacataatttaatgtaattacaagtgt 43243128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 18167 - 18110
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  18167 gacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgt 18110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 16207641 - 16207586
Alignment:
Q  33 aaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttggtgtcagacac 16207586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 19167637 - 19167571
Alignment:
Q  23 tgacaccgataaaattttgagaaaa-tgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    |||||||||||||||||||| |||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  19167637 tgacaccgataaaattttgaaaaaaatgacacaattcaatgtaatcacaagtgtcggtgtcagacac 19167571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30080560 - 30080511
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 73  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  30080560 gacactgataaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 7621308 - 7621183
Alignment:
Q  11 gacatggacacct-gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtg-----tcagacacgacacatatcggacat 104  Q
    ||||||||||| | ||||| ||||||||||  | ||| |||||||||||||||||||||||||| | ||||     |||||||||| || ||||||||||    
T  7621308 gacatggacacgtcgacacagataaaatttaaaaaaattgacataatttaatgtaatcacaagtatcggtgtcatatcagacacgatacttatcggacat 7621209  T
Q  105 cgggacacaccttaaatcaggagtgt 130  Q
    | ||||||  ||| |||||| |||||    
T  7621208 caggacacgtcttcaatcagaagtgt 7621183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 21320005 - 21319953
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||| ||||||||||||| ||||||| |||||| |||||||||||||||||    
T  21320005 tgacacggataaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 28296328 - 28296386
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||||| | |||||||||||||||||||| |||||| ||| | |||||||||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtc 28296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 309158 - 309195
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaat 61  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  309158 gacaccgataaaattttgagaaaatgacataatgtaat 309195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 26205816 - 26205775
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  26205816 accgataaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 38784808 - 38784857
Alignment:
Q  26 caccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||| ||| ||||||| |||||| |||||||||||||||||    
T  38784808 caccgataaaattgtgaaaaaatgatataattcaatgtaatcacaagtgt 38784857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 2577239 - 2577195
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatca 2577195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9031985 - 9031937
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaa 71  Q
    ||||||||||||| ||||||| ||||||||||||| ||| |||||||||    
T  9031985 tgacaccgataaatttttgaggaaatgacataattcaatctaatcacaa 9031937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 27932235 - 27932323
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||||| ||| | ||||||||||| |||||||| | |||||| |||| | |||||||| |||||||||| | ||||||| | ||||||    
T  27932235 gacaccgctaataatttgagaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacac 27932323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 28588733 - 28588645
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||||| ||| | ||||||||||| |||||||| | |||||| | | |||| |||||| ||||||||||||||| |||| | ||||||    
T  28588733 gacaccggtaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacac 28588645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 42192283 - 42192322
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  42192283 ataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 10010561 - 10010611
Alignment:
Q  31 ataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    |||||||||||| |||||||||||||| | |||||||||| |||| |||||    
T  10010561 ataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggtgt 10010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 8044340 - 8044287
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgtt 76  Q
    |||||| |||||| |||||||| ||||| ||||||||||| ||| |||||||||    
T  8044340 tgacacggataaagttttgagagaatgatataatttaatggaattacaagtgtt 8044287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 11596511 - 11596470
Alignment:
Q  27 accgataaaattttgagaaaatgacataatttaatgtaatca 68  Q
    |||||||| | |||||||||||||||||||| ||||||||||    
T  11596511 accgataataatttgagaaaatgacataattcaatgtaatca 11596470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 23012453 - 23012380
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggaca 111  Q
    ||||||||||| | ||||||||||||||| | | |||| |||||  |||||||||||| || |||| |||||||    
T  23012453 tttgagaaaatcatataatttaatgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 38749622 - 38749565
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||||||||| | ||||| |||||||||||||| |||||||| | | ||||||||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 10009842 - 10009886
Alignment:
Q  40 tgagaaaatgacataatttaatgtaatcacaagtgttggtgtcag 84  Q
    |||||||||||||||||| |||||||||||| |||| | ||||||    
T  10009842 tgagaaaatgacataattcaatgtaatcacatgtgtcgttgtcag 10009886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 15294929 - 15294981
Alignment:
Q  22 ctgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtg 74  Q
    ||||| ||||| | ||||||| |||||||||||||| || |||||||||||||    
T  15294929 ctgacgccgatgatattttgaaaaaatgacataattcaaggtaatcacaagtg 15294981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 38548645 - 38548597
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttgg 78  Q
    ||||||||||||||||||||| ||| |||||  |||| |||||||||||    
T  38548645 gataaaattttgagaaaatgatatattttaagctaattacaagtgttgg 38548597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 8953 - 9007
Alignment:
Q  29 cgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtca 83  Q
    ||||||||||||||||||||||||||||| || |||||||||||||| |||||||    
T  8953 cgataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 24176820 - 24176871
Alignment:
Q  25 acaccgataaaattttgagaaaa-tgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24176820 acaccgataaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 110
Target Start/End: Original strand, 19637768 - 19637854
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggac 110  Q
    ||||||||||| | ||| |||||||||||| ||| |||||||||| | |||| |||||| ||||||| ||||||| |||| ||||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacacgatacatatccgacaccgggac 19637854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 22515932 - 22515858
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| ||||| |||||||||| |||||| |||||||| |||||| ||||||||||||||| |||| || |||||    
T  22515932 tttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacgacacatatccgacaccgagacac 22515858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 33202902 - 33202991
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    |||||||||||| | ||| | |||||||||||| | |||||||||| | || |||||||||||||||| ||||||| |||| || |||||    
T  33202902 tgacaccgataataattttaaaaaatgacataaatcaatgtaatcatatgttttggtgtcagacacgatacatatccgacaccgtgacac 33202991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 14332409 - 14332454
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcaca 70  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  14332409 gacaccgataaaattt-gagaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 40176604 - 40176654
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||| ||||    
T  40176604 acaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgt 40176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  34 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 24462329 - 24462280
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagt 73  Q
    ||||| ||| ||||||||| |||||||||||||| |||||||||||||||    
T  24462329 gacactgatcaaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 38078706 - 38078649
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacat 95  Q
    ||||| ||||| |||||||| |||||||| |||||||| |||||| ||||||||||||    
T  38078706 tttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcggacacgacacat 38078649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 41877529 - 41877464
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacg 89  Q
    ||||||| ||| | ||||||||||| |||||||||| |||||| |||||||| |||||| ||||||    
T  41877529 gacaccgctaataatttgagaaaattacataatttagtgtaattacaagtgtcggtgtcggacacg 41877464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 1815277 - 1815345
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||| |||||||| | |||||| |||||||| |||||| |||||||||||| || |||| ||||||||    
T  1815277 aaaatcacataattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacac 1815345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 7988510 - 7988446
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 88  Q
    ||||| ||||| | ||| ||||| |||||||||| |||||||||| ||||||||||||| |||||    
T  7988510 gacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggacac 7988446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 43966816 - 43966864
Alignment:
Q  34 aaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    ||||||||||||||||| | |||| |||||||||||| |||||||||||    
T  43966816 aaattttgagaaaatgatacaattcaatgtaatcacatgtgttggtgtc 43966864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 7888106 - 7888153
Alignment:
Q  35 aattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||| |  ||||||||||||||||||||||||| ||||||    
T  7888106 aattttgagaaactcgcataatttaatgtaatcacaagtgtcggtgtc 7888153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 28170382 - 28170432
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||| |||||||||||| |||||||||||||| |||||||| ||||||||    
T  28170382 gacaccaataaaattttga-aaaatgacataattcaatgtaataacaagtgt 28170432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 32461508 - 32461465
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 81  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||||    
T  32461508 tttgaaaaaatcacataatttaatgtaattacaagtgttggtgt 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 40258978 - 40258923
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacac 93  Q
    ||||| ||||| |||||||| | |||||| |||||||| |||||||||||||||||    
T  40258978 tttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacacgacac 40258923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 40686817 - 40686766
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||| |||||||||||||| ||||||| |||||| |||||||||| ||||||    
T  40686817 gacatcgataaaattttgataaaatgatataattcaatgtaatcataagtgt 40686766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 8203835 - 8203873
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgtt 76  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  8203835 tttgagaaaatgacataagtgaatgtaatcacaagtgtt 8203873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 8204002 - 8204044
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtg 80  Q
    ||||| ||||||| ||||||||| |||||||||||||||||||    
T  8204002 tttgacaaaatgatataatttaacgtaatcacaagtgttggtg 8204044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Complemental strand, 8842759 - 8842685
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    ||||||||||  | ||||||||||||||| | | || |||||||| |||||||||| |||| |||||| ||||||    
T  8842759 tttgagaaaaacatataatttaatgtaattatatgtattggtgtcggacacgacacgtatccgacatcaggacac 8842685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 18190153 - 18190075
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacatatcggacatcgggacacacct 116  Q
    ||||| ||||| |||||||| | |||||| |||||||| | |||||||||| |||| | || |||| ||||||||||||    
T  18190153 tttgaaaaaattacataattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacacacct 18190075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 42005006 - 42004953
Alignment:
Q  24 gacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttg 77  Q
    ||||| ||||| | |||||||||||||||||||||| |||||||| | ||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcataggtgttg 42004953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 50195504 - 50195459
Alignment:
Q  44 aaaatgacataatttaatgtaatcacaagtgttggtgtcagacacg 89  Q
    |||||||||||||| |||||||||||| |||| |||||| ||||||    
T  50195504 aaaatgacataattgaatgtaatcacatgtgtcggtgtcggacacg 50195459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 6895111 - 6895151
Alignment:
Q  25 acaccgataaaattttgagaaaatgacataatttaatgtaa 65  Q
    ||||||| |||||||| ||||||||||||||| ||||||||    
T  6895111 acaccgacaaaattttaagaaaatgacataatgtaatgtaa 6895151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 31667443 - 31667483
Alignment:
Q  42 agaaaatgacataatttaatgtaatcacaagtgttggtgtc 82  Q
    |||||||||||||||| |||||||||||| |||| ||||||    
T  31667443 agaaaatgacataattaaatgtaatcacatgtgtcggtgtc 31667483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 39410641 - 39410705
Alignment:
Q  23 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagaca 87  Q
    ||||||||||||||||||| || ||  |||||||| |||||||  ||| ||||||||||| ||||    
T  39410641 tgacaccgataaaattttgggataacaacataattcaatgtaactacatgtgttggtgtcggaca 39410705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 41017449 - 41017421
Alignment:
Q  38 tttgagaaaatgacataatttaatgtaat 66  Q
    |||||||||||||||||||||||||||||    
T  41017449 tttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 8750 - 8705
Alignment:
Q  30 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgt 75  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||    
T  8750 gataaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 9747 - 9707
Alignment:
Q  72 gtgttggtgtcagacacgacacatatcggacatcgggacac 112  Q
    |||||||||||||||||||||| | || |||||||||||||    
T  9747 gtgttggtgtcagacacgacacttgtctgacatcgggacac 9707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University