View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_high_75 (Length: 249)

Name: NF1056_high_75
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_high_75
NF1056_high_75
[»] chr8 (3 HSPs)
chr8 (4-242)||(4644686-4644925)
chr8 (26-114)||(23696402-23696490)
chr8 (47-87)||(4037553-4037593)
[»] chr1 (3 HSPs)
chr1 (15-87)||(23661873-23661945)
chr1 (15-84)||(23590506-23590575)
chr1 (27-114)||(48226671-48226758)
[»] chr7 (3 HSPs)
chr7 (29-114)||(45623730-45623815)
chr7 (30-108)||(30780034-30780112)
chr7 (50-90)||(21336532-21336572)
[»] chr4 (2 HSPs)
chr4 (46-114)||(17062530-17062598)
chr4 (46-110)||(21347352-21347416)
[»] chr5 (1 HSPs)
chr5 (15-84)||(30312796-30312865)
[»] chr3 (2 HSPs)
chr3 (57-110)||(50725602-50725655)
chr3 (57-110)||(50787194-50787247)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 4644686 - 4644925
Alignment:
Q  4 atgtcgaataatatataaaatcggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtagg 103  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4644686 atgtcgaaaactatataaaatcggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtagg 4644785  T
Q  104 ctagatggcacagcataagacatcacaattgcaatagtacttctttcaa-ttannnnnnnnnnngtgtgcaatagttcagttaattcatgattattagca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||             | |||||||||||||||||||||||||||||||||    
T  4644786 ctagatggcacagcataagacatcacaattgcaatagtacttctttcaatttttttttatttttttttgcaatagttcagttaattcatgattattagca 4644885  T
Q  203 ttttacattcttttacaataacaaacaatgtttgaatttt 242  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  4644886 ttttacattcttttacaataacacacaatgtttgaatttt 4644925  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 114
Target Start/End: Original strand, 23696402 - 23696490
Alignment:
Q  26 ggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctagatggcac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |  |||||||||||||||||    
T  23696402 ggaaaaactggttatcatatgtattttgatttattttcatttttgtgcaccataccaaagaatatacattttggtaggctagatggcac 23696490  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 4037553 - 4037593
Alignment:
Q  47 tattttgatttattttcatttttgtacaccataccaaagaa 87  Q
    |||||| ||||||||| |||||||| |||||||||||||||    
T  4037553 tatttttatttatttttatttttgtgcaccataccaaagaa 4037593  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 23661873 - 23661945
Alignment:
Q  15 tatataaaatcggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaa 87  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23661873 tataaaaaaccggaaaaactggttatcatatgtattttgatttattttcatttttgtgcaccataccaaagaa 23661945  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 23590506 - 23590575
Alignment:
Q  15 tatataaaatcggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaa 84  Q
    ||||||||||| | ||||| |||||||||||||||||  | |||||||||||||||| ||||||||||||    
T  23590506 tatataaaatctgcaaaaccggttatcatatgtatttccaattattttcatttttgtgcaccataccaaa 23590575  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 48226671 - 48226758
Alignment:
Q  27 gaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctagatggcac 114  Q
    |||||||| |||||  |||||||||| |||||||||||||||||| |||||||||||| || || | ||  || ||||||||||||||    
T  48226671 gaaaaactagttattgtatgtatttttatttattttcatttttgtgcaccataccaaacaatatgccctttggcaggctagatggcac 48226758  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 45623815 - 45623730
Alignment:
Q  29 aaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctagatggcac 114  Q
    ||||||||||||  |||||||||| |||||||||||||||||| |||||||||||| || || ||||  |||||||||||||||||    
T  45623815 aaaactggttattgtatgtatttttatttattttcatttttgtgcaccataccaaacaatatgcactttggtaggctagatggcac 45623730  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 30780112 - 30780034
Alignment:
Q  30 aaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctaga 108  Q
    |||||||| || | ||||||||| |||||||||||||||||| || |||| |||||||||| ||||  || ||||||||    
T  30780112 aaactggtgataacatgtatttttatttattttcatttttgtgcatcatatcaaagaagatgcactttggcaggctaga 30780034  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 21336572 - 21336532
Alignment:
Q  50 tttgatttattttcatttttgtacaccataccaaagaagat 90  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  21336572 tttgatttattttcatttttgtgcatcataccaaagaagat 21336532  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 17062530 - 17062598
Alignment:
Q  46 gtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctagatggcac 114  Q
    ||||||| |||||||||||||||||| ||||||||||||||| || | ||  |||||||||||||||||    
T  17062530 gtatttttatttattttcatttttgtgcaccataccaaagaatatgcccttgggtaggctagatggcac 17062598  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 21347416 - 21347352
Alignment:
Q  46 gtattttgatttattttcatttttgtacaccataccaaagaagatacactccggtaggctagatg 110  Q
    |||||||  |||||||||||||||||  |||||||||||||| |||||||  || ||||||||||    
T  21347416 gtatttttgtttattttcatttttgtgtaccataccaaagaatatacactttggcaggctagatg 21347352  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 30312796 - 30312865
Alignment:
Q  15 tatataaaatcggaaaaactggttatcatatgtattttgatttattttcatttttgtacaccataccaaa 84  Q
    ||||||||| | | ||||| || ||||||||||||||  | |||||||||||||||| ||||||||||||    
T  30312796 tatataaaacctgcaaaaccggctatcatatgtatttccaattattttcatttttgtgcaccataccaaa 30312865  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 50725602 - 50725655
Alignment:
Q  57 tattttcatttttgtacaccataccaaagaagatacactccggtaggctagatg 110  Q
    |||||| |||||||| |||||||||||| ||||||||||  || ||||||||||    
T  50725602 tatttttatttttgtgcaccataccaaaaaagatacactttggcaggctagatg 50725655  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 50787247 - 50787194
Alignment:
Q  57 tattttcatttttgtacaccataccaaagaagatacactccggtaggctagatg 110  Q
    |||||| |||||||| |||||||||||| ||||||||||  || ||||||||||    
T  50787247 tatttttatttttgtgcaccataccaaaaaagatacactttggcaggctagatg 50787194  T

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