View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1056_high_79 (Length: 237)
Name: NF1056_high_79
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_high_79 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr8 (5 HSPs) |
| |
|
| [»] scaffold1350 (1 HSPs) |
| | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 69 - 237
Target Start/End: Complemental strand, 25855894 - 25855726
Alignment:
| Q |
69 |
gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgt |
168 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25855894 |
gctttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgt |
25855795 |
T |
|
| Q |
169 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctcttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25855794 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctcttt |
25855726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 234
Target Start/End: Complemental strand, 33384659 - 33384496
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||| |||| |||||||||||||| |
|
|
| T |
33384659 |
tttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgaggactctctactttaggaataagggcaatgaacgtag |
33384560 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctc |
234 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
33384559 |
aatttaaacctttcgacaacctcccgttcctatgaaaattagtaacaaatctcacaacatcctc |
33384496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 33171369 - 33171484
Alignment:
| Q |
95 |
cccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcc |
194 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | ||||| | ||||||||||| |||| ||||| ||||||| |||||||||||| ||||| | | |
|
|
| T |
33171369 |
cccaccaacgaaatgggtcgaaaatcattcaatgtctgaggactgtcaactttaggaataagagcaataaacgtagaatttataccttttgacaattttc |
33171468 |
T |
|
| Q |
195 |
cattcctatgaaactc |
210 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
33171469 |
cattcctatgaaactc |
33171484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 27164548 - 27164454
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaa |
165 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||| |||| ||||||||||| ||| | ||| | ||| |||||||| |||| |||||||| |
|
|
| T |
27164548 |
tttgccaaaattttataaagactacccaacaacgaaataggtcgaaaatcattcaaggacttaggactctctactttaggaataagagcaatgaa |
27164454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 42515428 - 42515549
Alignment:
| Q |
92 |
ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacc |
191 |
Q |
| |
|
||||||||||| ||||| || | ||| ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||||| ||||||| ||| |
|
|
| T |
42515428 |
ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt |
42515527 |
T |
|
| Q |
192 |
tcccattcctatgaaactcagt |
213 |
Q |
| |
|
||||||||||||| || ||||| |
|
|
| T |
42515528 |
tcccattcctatggaattcagt |
42515549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 12833648 - 12833729
Alignment:
| Q |
131 |
tgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcag |
212 |
Q |
| |
|
||||||| ||||| ||||| |||| ||||||||||| |||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
12833648 |
tgagggctgtcaaccttaggaataagagcaatgaacgtgctatttatccctttggtcaaccttccattcctatgaaactcag |
12833729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 12865626 - 12865707
Alignment:
| Q |
131 |
tgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcag |
212 |
Q |
| |
|
||||||| ||||| ||||| |||| ||||||||||| |||||| ||||| | |||||| ||||||||||||||||||| |
|
|
| T |
12865626 |
tgagggctgtcaaccttaggaataagagcaatgaacgtgctatttatccctttggtcaaccttccattcctatgaaactcag |
12865707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 20825985 - 20826153
Alignment:
| Q |
69 |
gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgt |
168 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
20825985 |
gctttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgt |
20826084 |
T |
|
| Q |
169 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctcttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20826085 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtaacaaatctcacaacatcctcttt |
20826153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 227
Target Start/End: Complemental strand, 13877940 - 13877781
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactcccc---accaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacg |
167 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||||||| || |||| || ||||||| |||||| || | |||||||||||| |||| |||||||||| |
|
|
| T |
13877940 |
tttgccaatattttataaagactcccccccaccaacgatataggtcggaactcattcaaggattgtggactctcaactttaggaataagagcaatgaacg |
13877841 |
T |
|
| Q |
168 |
tagcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaa |
227 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||| || ||||| | ||| ||||||| |
|
|
| T |
13877840 |
tagaattaatacctttcgacaacctcccattcctatggaattcagttataaaactcacaa |
13877781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 7926094 - 7926221
Alignment:
| Q |
92 |
ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacc |
191 |
Q |
| |
|
||||||||||| ||||| || | ||| ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||||| ||||||| ||| |
|
|
| T |
7926094 |
ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt |
7926193 |
T |
|
| Q |
192 |
tcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
||||||||||||| || ||||| ||||| |
|
|
| T |
7926194 |
tcccattcctatggaattcagtcacaaa |
7926221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 8301560 - 8301640
Alignment:
| Q |
141 |
caactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatc |
221 |
Q |
| |
|
|||||||||| || | |||||||||||||| |||||| ||||||| || | |||||||||||||| || || ||||||| |
|
|
| T |
8301560 |
caactttaggaattagggcaatgaacgtagaatttatgcctttcgctaattttccattcctatgaaattcggttacaaatc |
8301640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 20492535 - 20492615
Alignment:
| Q |
141 |
caactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatc |
221 |
Q |
| |
|
|||||||||| || | |||||||||||||| |||||| ||||||| || | |||||||||||||| || || ||||||| |
|
|
| T |
20492535 |
caactttaggaattagggcaatgaacgtagaatttatgcctttcgctaattttccattcctatgaaattcggttacaaatc |
20492615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 12333543 - 12333378
Alignment:
| Q |
69 |
gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgt |
168 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
12333543 |
gctttgccataattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgagggcactctactttagggataagggcaatgaacgt |
12333444 |
T |
|
| Q |
169 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctc |
234 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
12333443 |
agcatttatacctttcgacaacatcccgttcctatgaaattcagtaacaaatctcacaacatcctc |
12333378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 16185998 - 16186134
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||| ||||||||||| || || | | ||||||||||| || | ||||||||||||| |
|
|
| T |
16185998 |
tttgccaaaattttataaagactacccaccaacgaaatgggtcgaaaatcattcaaagactgggtactctcaactttagcaatcagtgcaatgaacgtag |
16186097 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaa |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
16186098 |
aatttatacctttcgacaatttcccattcctatgaaa |
16186134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 961592 - 961477
Alignment:
| Q |
95 |
cccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcc |
194 |
Q |
| |
|
||||||||| |||| |||| ||||||||||| | ||||| | ||||||||||| |||| ||||| ||||||| |||||||||||| ||||| | | |
|
|
| T |
961592 |
cccaccaacaaaatgggtcaaaaatcattcaatgtctgaggactgtcaactttaggaataagagcaataaacgtagaatttataccttttgacaattttc |
961493 |
T |
|
| Q |
195 |
cattcctatgaaactc |
210 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
961492 |
cattcctatgaaactc |
961477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 2365986 - 2366113
Alignment:
| Q |
92 |
ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacc |
191 |
Q |
| |
|
||||||||||| ||||| || | ||| ||||||| |||||||||| | |||||||| |||| ||| ||||| |||| |||||| ||||||| ||| |
|
|
| T |
2365986 |
ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagccactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt |
2366085 |
T |
|
| Q |
192 |
tcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
||||||||||||| || ||||| ||||| |
|
|
| T |
2366086 |
tcccattcctatggaattcagtcacaaa |
2366113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 17076746 - 17076701
Alignment:
| Q |
80 |
attttataaagactccccaccaacgaaatcggtctaaaatcattca |
125 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
17076746 |
attttataaagactacccaccaacgaaatgggtcaaaaatcattca |
17076701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 17076689 - 17076641
Alignment:
| Q |
159 |
caatgaacgtagcatttatacctttcgacaacctcccattcctatgaaa |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | |||||||||||||| |
|
|
| T |
17076689 |
caatgaacgtagaatttatacctttcgacaattttccattcctatgaaa |
17076641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 17604789 - 17604624
Alignment:
| Q |
69 |
gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgt |
168 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||||||| |
|
|
| T |
17604789 |
gctttgccagaattttataaagactccccaccaacgaaatcggtctgaaatcattcaaggattgagggcactctactttagggataagggcaatgaacgt |
17604690 |
T |
|
| Q |
169 |
agcatttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatcctc |
234 |
Q |
| |
|
|| |||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
17604689 |
agaatttatacctttcgacaacctcccgtttctatgaaattcagtaacaaatctcacaacatcctc |
17604624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 15955405 - 15955302
Alignment:
| Q |
104 |
gaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacctcccattcctat |
203 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||| | ||||||||||||||| | ||||||||| || ||||||||||||||||||| | ||||||| || |
|
|
| T |
15955405 |
gaaataggtcgaaaatcattcaaggattgaggactctcaactttaggtattagagcaatgaacatataatttatacctttcgacaactttccattccaat |
15955306 |
T |
|
| Q |
204 |
gaaa |
207 |
Q |
| |
|
|||| |
|
|
| T |
15955305 |
gaaa |
15955302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 18681017 - 18680890
Alignment:
| Q |
83 |
ttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctt |
182 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| ||| || | | | | ||| |||||||| |||| | ||| ||||||| ||||||||||| |
|
|
| T |
18681017 |
ttataaagactccccaccaacgaaatgggtcaaaaatcaatcaacgactaaagactctcgactttaggaataagagaaataaacgtagaatttatacctt |
18680918 |
T |
|
| Q |
183 |
tcgacaacctcccattcctatgaaactc |
210 |
Q |
| |
|
|||| || | |||||||| |||||||| |
|
|
| T |
18680917 |
tcgaaaatttaccattcctgtgaaactc |
18680890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 11059309 - 11059263
Alignment:
| Q |
77 |
aaaattttataaagactccccaccaacgaaatcggtctaaaatcatt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||||||| |
|
|
| T |
11059309 |
aaaattttataaagactccccaccaaagaaataggacgaaaatcatt |
11059263 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 71 - 226
Target Start/End: Complemental strand, 33514645 - 33514490
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| |||| |||||||||||| |||| | ||||||||||| |
|
|
| T |
33514645 |
tttgccaaaattttataaagactccccaccagcgatataggtctaaactcattcaaagattgtgggctctcaactttaggaataagagtaatgaacgtag |
33514546 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcaca |
226 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| || ||||| | ||||| |||| |
|
|
| T |
33514545 |
aattaatacctttcgacaacctcccattcgtatggaattcagttagaaatcgcaca |
33514490 |
T |
|
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Target: scaffold1350 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold1350
Description:
Target: scaffold1350; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 71 - 231
Target Start/End: Original strand, 1233 - 1393
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| ||| | |||||||| ||||||| |||||||||| ||||||||| || |||| |||||||| |||| |
|
|
| T |
1233 |
tttgccaatattttataaagactccccaccagcgagacaggtctaaactcattcaaagattgagggctctcaactttcggaataagagcaatgaatgtag |
1332 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatc |
231 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| || ||||||| ||| | ||||||||| |
|
|
| T |
1333 |
aatttataccattcgacaacttcccattcctatggaattcagtgataaaacgcacaacatc |
1393 |
T |
|
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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29947816 - 29947879
Alignment:
| Q |
1 |
gcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29947816 |
gcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc |
29947879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 231
Target Start/End: Complemental strand, 47621528 - 47621368
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| |||| ||||||| ||||| ||||||| ||||| || | ||||||||||| |||||||| | |||||||||||| || | ||||||||||||| |
|
|
| T |
47621528 |
tttgccaaacttttatagagacttcccaccagagaaataggacgaaaatcattcaaagattgaggactctcaactttaggaattaaagcaatgaacgtag |
47621429 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaactcagtgacaaatctcacaacatc |
231 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||||| || | ||||||| ||||||||| |
|
|
| T |
47621428 |
aatttatacctttcgataacttaccattcctatgaaattctgaaacaaatcgcacaacatc |
47621368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 6052311 - 6052438
Alignment:
| Q |
92 |
ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacc |
191 |
Q |
| |
|
||||||||||| ||||| || | ||| ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||||| ||||||| ||| |
|
|
| T |
6052311 |
ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt |
6052410 |
T |
|
| Q |
192 |
tcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
||||||||||||| || ||||| ||||| |
|
|
| T |
6052411 |
tcccattcctatggaattcagtcacaaa |
6052438 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13862927 - 13862883
Alignment:
| Q |
79 |
aattttataaagactccccaccaacgaaatcggtctaaaatcatt |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
13862927 |
aattttataaagactccccaccaaagaaattggcctaaaatcatt |
13862883 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 11585639 - 11585489
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtag |
170 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||| || || |||| ||||||||||| |||||||| | ||||||||||||||| | || |||||||||| |
|
|
| T |
11585639 |
tttgccaaaattttatagagacttcccaccagtgagataggtcgaaaatcattcaatgattgaggactctcaactttaggtattaaagcgatgaacgtag |
11585540 |
T |
|
| Q |
171 |
catttatacctttcgacaacctcccattcctatgaaactcagtgacaaatc |
221 |
Q |
| |
|
|||||||||||| |||| | | |||||||||| ||| || || ||||||| |
|
|
| T |
11585539 |
aatttataccttttgacagctttccattcctatcaaattctgtaacaaatc |
11585489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 19732442 - 19732302
Alignment:
| Q |
70 |
ctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgta |
169 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| |||| ||||||||||| | |||| | || |||||||| |||| ||||| ||| || |
|
|
| T |
19732442 |
ctttgccaaaattttatagagacatcccaccaacgaaatgggtcaaaaatcattcaaagtccgaggactgtctactttaggaataagagcaataaacata |
19732343 |
T |
|
| Q |
170 |
gcatttatacctttcgacaacctcccattcctatgaaactc |
210 |
Q |
| |
|
| ||||||||||||||| || | ||||||||||||||||| |
|
|
| T |
19732342 |
gaatttatacctttcgaaaattttccattcctatgaaactc |
19732302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 1826989 - 1826846
Alignment:
| Q |
76 |
caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcattt |
175 |
Q |
| |
|
|||||||||||| | ||||||||||| ||||| || ||| ||||||| |||||||| || |||||||||| || | ||| |||||||||| |||| |
|
|
| T |
1826989 |
caaaattttatacatgctccccaccaaagaaatagggtgaaactcattcaaagattgaggacaagcaactttaggaattagggctatgaacgtagaattt |
1826890 |
T |
|
| Q |
176 |
atacctttcgacaacctcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
|| |||||||| || ||||||||||||| || ||||| ||||| |
|
|
| T |
1826889 |
atgcctttcgataatttcccattcctatggaattcagttacaaa |
1826846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 47420496 - 47420624
Alignment:
| Q |
76 |
caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcattt |
175 |
Q |
| |
|
||||||||| || | |||||||||||| ||||| || | | | ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||| |
|
|
| T |
47420496 |
caaaattttgtacaaactccccaccaaagaaatagggcgatactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaattt |
47420595 |
T |
|
| Q |
176 |
atacctttcgacaacctcccattcctatg |
204 |
Q |
| |
|
|| ||||||| ||| ||||||||||||| |
|
|
| T |
47420596 |
atgcctttcgttaacttcccattcctatg |
47420624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 5789382 - 5789254
Alignment:
| Q |
79 |
aattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttata |
178 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || ||||||||||| || | || | |||||||||| | || | |||||||||||| ||||||| |
|
|
| T |
5789382 |
aattttataaagactacccaccaatgaaatgggctgaaaatcattcaaagactatggactctcaactttaagaatgagaacaatgaacgtagaatttata |
5789283 |
T |
|
| Q |
179 |
cctttcgacaacctcccattcctatgaaa |
207 |
Q |
| |
|
||||||||||| | |||||||| ||||| |
|
|
| T |
5789282 |
cctttcgacaattttccattcctgtgaaa |
5789254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 17437977 - 17437929
Alignment:
| Q |
77 |
aaaattttataaagactccccaccaacgaaatcggtctaaaatcattca |
125 |
Q |
| |
|
|||| ||||||||||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
17437977 |
aaaaatttataaagactccccaccaatgatatcggtcgaaaatcattca |
17437929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 10561770 - 10561630
Alignment:
| Q |
79 |
aattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttata |
178 |
Q |
| |
|
||||||||| | ||| |||||||| ||||| || | ||||||||||||| ||||||| ||||| ||||| || | ||||||||| |||| || ||| |
|
|
| T |
10561770 |
aattttatacaaacttcccaccaaagaaatagggcgaaaatcattcaggcgctgagggctgtcaaccttaggaatgagggcaatgaaagtagagttaata |
10561671 |
T |
|
| Q |
179 |
cctttcgacaacctcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
||||| | || ||||||| | ||||||||||| |||||| |
|
|
| T |
10561670 |
cctttggctaatttcccattgcgatgaaactcagagacaaa |
10561630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 23280490 - 23280542
Alignment:
| Q |
71 |
tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcatt |
123 |
Q |
| |
|
||||||| ||||||||| | |||||||||||| ||||| |||| ||||||||| |
|
|
| T |
23280490 |
tttgtcagaattttatacaaactccccaccaaagaaatgggtcgaaaatcatt |
23280542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 104275 - 104148
Alignment:
| Q |
92 |
ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcatttatacctttcgacaacc |
191 |
Q |
| |
|
||||||||||| ||||| || | ||| ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||||| ||||||| ||| |
|
|
| T |
104275 |
ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt |
104176 |
T |
|
| Q |
192 |
tcccattcctatgaaactcagtgacaaa |
219 |
Q |
| |
|
||||||||||||| || ||||| ||||| |
|
|
| T |
104175 |
tcccattcctatggaattcagtcacaaa |
104148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 4936576 - 4936448
Alignment:
| Q |
76 |
caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcattt |
175 |
Q |
| |
|
||||||||| || | ||||||||| || ||||| || | | | ||||||| |||||||||| |||||||||| |||| ||| ||||| |||| |||| |
|
|
| T |
4936576 |
caaaattttgtacaaactccccacgaaagaaatagggcgatactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaattt |
4936477 |
T |
|
| Q |
176 |
atacctttcgacaacctcccattcctatg |
204 |
Q |
| |
|
|| ||||||| ||| ||||||||||||| |
|
|
| T |
4936476 |
atgcctttcgttaacttcccattcctatg |
4936448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 17722328 - 17722455
Alignment:
| Q |
77 |
aaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactcaactttaggtataatggcaatgaacgtagcattta |
176 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| || | ||| ||||||| |||||||| | | |||||||| || | ||| |||||| ||| ||| | |
|
|
| T |
17722328 |
aaaattttatacagactccccaccaaagaaatagggcgaaactcattcaacgattgaggactagctactttaggaattagggcgatgaacctagaattaa |
17722427 |
T |
|
| Q |
177 |
tacctttcgacaacctcccattcctatg |
204 |
Q |
| |
|
|||||||||| || ||| ||||||||| |
|
|
| T |
17722428 |
tacctttcgataatttcctattcctatg |
17722455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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