View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_high_84 (Length: 212)

Name: NF1056_high_84
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_high_84
NF1056_high_84
[»] chr8 (4 HSPs)
chr8 (69-212)||(20825985-20826128)
chr8 (71-204)||(13877804-13877940)
chr8 (76-198)||(16374429-16374551)
chr8 (92-204)||(7926094-7926206)
[»] chr5 (7 HSPs)
chr5 (69-212)||(25855751-25855894)
chr5 (71-207)||(33384523-33384659)
chr5 (71-161)||(27164458-27164548)
chr5 (95-210)||(33171369-33171484)
chr5 (146-212)||(12833663-12833729)
chr5 (146-212)||(12865641-12865707)
chr5 (92-204)||(42515428-42515540)
[»] chr3 (6 HSPs)
chr3 (69-212)||(12333400-12333543)
chr3 (71-207)||(16185998-16186134)
chr3 (95-210)||(961477-961592)
chr3 (80-125)||(17076701-17076746)
chr3 (92-204)||(2365986-2366098)
chr3 (163-207)||(17076641-17076685)
[»] chr6 (5 HSPs)
chr6 (69-212)||(17604646-17604789)
chr6 (104-207)||(15955302-15955405)
chr6 (83-210)||(18680890-18681017)
chr6 (95-210)||(13939428-13939543)
chr6 (77-123)||(11059263-11059309)
[»] chr2 (1 HSPs)
chr2 (71-204)||(33514512-33514645)
[»] chr1 (5 HSPs)
chr1 (1-64)||(29947816-29947879)
chr1 (71-207)||(47621392-47621528)
chr1 (79-123)||(13862883-13862927)
chr1 (76-183)||(32351653-32351760)
chr1 (92-204)||(6052311-6052423)
[»] scaffold1350 (1 HSPs)
scaffold1350 (71-204)||(1233-1366)
[»] chr4 (8 HSPs)
chr4 (70-210)||(19732302-19732442)
chr4 (71-203)||(11585507-11585639)
chr4 (79-207)||(5789254-5789382)
chr4 (77-125)||(17437929-17437977)
chr4 (76-204)||(1826861-1826989)
chr4 (146-210)||(20508285-20508349)
chr4 (71-123)||(23280490-23280542)
chr4 (76-204)||(47420496-47420624)
[»] chr7 (1 HSPs)
chr7 (77-204)||(17722328-17722455)
[»] scaffold0034 (1 HSPs)
scaffold0034 (92-204)||(104163-104275)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 212
Target Start/End: Original strand, 20825985 - 20826128
Alignment:
Q  69 gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgt 168  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  20825985 gctttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgt 20826084  T
Q  169 agcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  20826085 agcatttatacctttcgacaacctcccattcctatgaaactcag 20826128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 13877940 - 13877804
Alignment:
Q  71 tttgtcaaaattttataaagactcccc---accaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacg 167  Q
    |||| ||| ||||||||||||||||||   |||||||| || ||||  || ||||||| |||||| || | ||| |||||||| |||||||||| |||||    
T  13877940 tttgccaatattttataaagactcccccccaccaacgatataggtcggaactcattcaaggattgtggactctcaactttaggaataagagcaatgaacg 13877841  T
Q  168 tagcatttatacctttcgacaacctcccattcctatg 204  Q
    ||| ||| |||||||||||||||||||||||||||||    
T  13877840 tagaattaatacctttcgacaacctcccattcctatg 13877804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 16374551 - 16374429
Alignment:
Q  76 caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcattt 175  Q
    |||||| |||||||||||||| ||||| ||||| || | ||||||||| ||    |||||||   |||||||||| || ||||||| ||| |||| |||     
T  16374551 caaaatcttataaagactcccgaccaaagaaataggacgaaaatcattgagcttctgagggctagctactttaggaatgagagcaatgaaagtagtattg 16374452  T
Q  176 atacctttcgacaacctcccatt 198  Q
    |||||||| || ||| |||||||    
T  16374451 atacctttggataacttcccatt 16374429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 7926094 - 7926206
Alignment:
Q  92 ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacc 191  Q
    ||||||||||| ||||| || | ||| |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| |||||| ||||||| |||      
T  7926094 ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt 7926193  T
Q  192 tcccattcctatg 204  Q
    |||||||||||||    
T  7926194 tcccattcctatg 7926206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 25855894 - 25855751
Alignment:
Q  69 gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgt 168  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  25855894 gctttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagggcaatgaacgt 25855795  T
Q  169 agcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25855794 agcatttatacctttcgacaacctcccattcctatgaaactcag 25855751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 33384659 - 33384523
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| ||||| |||| ||||||||    
T  33384659 tttgccaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgaggactctctactttaggaataagggcaatgaacgtag 33384560  T
Q  171 catttatacctttcgacaacctcccattcctatgaaa 207  Q
     ||||| |||||||||||||||||| |||||||||||    
T  33384559 aatttaaacctttcgacaacctcccgttcctatgaaa 33384523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 71 - 161
Target Start/End: Complemental strand, 27164548 - 27164458
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaa 161  Q
    |||| |||||||||||||||||| |||| ||||||||| |||| ||||||||||| ||| | ||| | |||||||||||| ||||||||||    
T  27164548 tttgccaaaattttataaagactacccaacaacgaaataggtcgaaaatcattcaaggacttaggactctctactttaggaataagagcaa 27164458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 33171369 - 33171484
Alignment:
Q  95 cccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcc 194  Q
    |||||||||||||| |||| |||||||||||  |  ||||| |  || |||||||| ||||||||||  ||||||| |||||||||||| |||||  | |    
T  33171369 cccaccaacgaaatgggtcgaaaatcattcaatgtctgaggactgtcaactttaggaataagagcaataaacgtagaatttataccttttgacaattttc 33171468  T
Q  195 cattcctatgaaactc 210  Q
    ||||||||||||||||    
T  33171469 cattcctatgaaactc 33171484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 12833663 - 12833729
Alignment:
Q  146 ttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    ||||| |||||||||| ||||||   |||||| ||||| | |||||| |||||||||||||||||||    
T  12833663 ttaggaataagagcaatgaacgtgctatttatccctttggtcaaccttccattcctatgaaactcag 12833729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 12865641 - 12865707
Alignment:
Q  146 ttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    ||||| |||||||||| ||||||   |||||| ||||| | |||||| |||||||||||||||||||    
T  12865641 ttaggaataagagcaatgaacgtgctatttatccctttggtcaaccttccattcctatgaaactcag 12865707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 42515428 - 42515540
Alignment:
Q  92 ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacc 191  Q
    ||||||||||| ||||| || | ||| |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| |||||| ||||||| |||      
T  42515428 ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt 42515527  T
Q  192 tcccattcctatg 204  Q
    |||||||||||||    
T  42515528 tcccattcctatg 42515540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 12333543 - 12333400
Alignment:
Q  69 gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgt 168  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||    
T  12333543 gctttgccataattttataaagactccccaccaacgaaatcggtctaaaatcattcaaggattgagggcactctactttagggataagggcaatgaacgt 12333444  T
Q  169 agcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||    
T  12333443 agcatttatacctttcgacaacatcccgttcctatgaaattcag 12333400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 71 - 207
Target Start/End: Original strand, 16185998 - 16186134
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| |||||||||||||||||| |||||||||||||| |||| |||||||||||  || || |  | ||| |||||||  || || |||| ||||||||    
T  16185998 tttgccaaaattttataaagactacccaccaacgaaatgggtcgaaaatcattcaaagactgggtactctcaactttagcaatcagtgcaatgaacgtag 16186097  T
Q  171 catttatacctttcgacaacctcccattcctatgaaa 207  Q
     ||||||||||||||||||  ||||||||||||||||    
T  16186098 aatttatacctttcgacaatttcccattcctatgaaa 16186134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 961592 - 961477
Alignment:
Q  95 cccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcc 194  Q
    ||||||||| |||| |||| |||||||||||  |  ||||| |  || |||||||| ||||||||||  ||||||| |||||||||||| |||||  | |    
T  961592 cccaccaacaaaatgggtcaaaaatcattcaatgtctgaggactgtcaactttaggaataagagcaataaacgtagaatttataccttttgacaattttc 961493  T
Q  195 cattcctatgaaactc 210  Q
    ||||||||||||||||    
T  961492 cattcctatgaaactc 961477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 17076746 - 17076701
Alignment:
Q  80 attttataaagactccccaccaacgaaatcggtctaaaatcattca 125  Q
    |||||||||||||| |||||||||||||| |||| |||||||||||    
T  17076746 attttataaagactacccaccaacgaaatgggtcaaaaatcattca 17076701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 2365986 - 2366098
Alignment:
Q  92 ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacc 191  Q
    ||||||||||| ||||| || | ||| |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| |||||| ||||||| |||      
T  2365986 ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagccactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt 2366085  T
Q  192 tcccattcctatg 204  Q
    |||||||||||||    
T  2366086 tcccattcctatg 2366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 17076685 - 17076641
Alignment:
Q  163 gaacgtagcatttatacctttcgacaacctcccattcctatgaaa 207  Q
    |||||||| ||||||||||||||||||  | ||||||||||||||    
T  17076685 gaacgtagaatttatacctttcgacaattttccattcctatgaaa 17076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 17604789 - 17604646
Alignment:
Q  69 gctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgt 168  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||| ||||||    
T  17604789 gctttgccagaattttataaagactccccaccaacgaaatcggtctgaaatcattcaaggattgagggcactctactttagggataagggcaatgaacgt 17604690  T
Q  169 agcatttatacctttcgacaacctcccattcctatgaaactcag 212  Q
    || |||||||||||||||||||||||| || |||||||| ||||    
T  17604689 agaatttatacctttcgacaacctcccgtttctatgaaattcag 17604646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 207
Target Start/End: Complemental strand, 15955405 - 15955302
Alignment:
Q  104 gaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcccattcctat 203  Q
    ||||| |||| ||||||||||| ||||||||| | ||| ||||||||||| ||||||| |||| ||  ||||||||||||||||||| | ||||||| ||    
T  15955405 gaaataggtcgaaaatcattcaaggattgaggactctcaactttaggtattagagcaatgaacatataatttatacctttcgacaactttccattccaat 15955306  T
Q  204 gaaa 207  Q
    ||||    
T  15955305 gaaa 15955302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 18681017 - 18680890
Alignment:
Q  83 ttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctt 182  Q
    |||||||||||||||||||||||||| |||| ||||||| |||  || | | | | ||| |||||||| ||||||| ||  ||||||| |||||||||||    
T  18681017 ttataaagactccccaccaacgaaatgggtcaaaaatcaatcaacgactaaagactctcgactttaggaataagagaaataaacgtagaatttatacctt 18680918  T
Q  183 tcgacaacctcccattcctatgaaactc 210  Q
    |||| ||  | |||||||| ||||||||    
T  18680917 tcgaaaatttaccattcctgtgaaactc 18680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 13939428 - 13939543
Alignment:
Q  95 cccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcc 194  Q
    |||||||||||||  |||| |||||||||||  |  |||||    ||||||||||| ||||||||||  ||||||  |||||||||||| |||||  | |    
T  13939428 cccaccaacgaaaagggtcgaaaatcattcaatgtctgaggattgtctactttaggaataagagcaataaacgtaaaatttataccttttgacaattttc 13939527  T
Q  195 cattcctatgaaactc 210  Q
    ||||||||||||||||    
T  13939528 cattcctatgaaactc 13939543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 11059309 - 11059263
Alignment:
Q  77 aaaattttataaagactccccaccaacgaaatcggtctaaaatcatt 123  Q
    |||||||||||||||||||||||||| ||||| || | |||||||||    
T  11059309 aaaattttataaagactccccaccaaagaaataggacgaaaatcatt 11059263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 33514645 - 33514512
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| |||||||||||||||||||||||||| ||| || |||||||| |||||||  ||||| |||| ||| |||||||| ||||||| || ||||||||    
T  33514645 tttgccaaaattttataaagactccccaccagcgatataggtctaaactcattcaaagattgtgggctctcaactttaggaataagagtaatgaacgtag 33514546  T
Q  171 catttatacctttcgacaacctcccattcctatg 204  Q
     ||| |||||||||||||||||||||||| ||||    
T  33514545 aattaatacctttcgacaacctcccattcgtatg 33514512  T

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Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29947816 - 29947879
Alignment:
Q  1 gcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29947816 gcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc 29947879  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 47621528 - 47621392
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| |||| ||||||| ||||| |||||||  ||||| || | |||||||||||  |||||||| | ||| |||||||| || | ||||| ||||||||    
T  47621528 tttgccaaacttttatagagacttcccaccagagaaataggacgaaaatcattcaaagattgaggactctcaactttaggaattaaagcaatgaacgtag 47621429  T
Q  171 catttatacctttcgacaacctcccattcctatgaaa 207  Q
     ||||||||||||||| ||| | ||||||||||||||    
T  47621428 aatttatacctttcgataacttaccattcctatgaaa 47621392  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 13862927 - 13862883
Alignment:
Q  79 aattttataaagactccccaccaacgaaatcggtctaaaatcatt 123  Q
    |||||||||||||||||||||||| ||||| || |||||||||||    
T  13862927 aattttataaagactccccaccaaagaaattggcctaaaatcatt 13862883  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 183
Target Start/End: Complemental strand, 32351760 - 32351653
Alignment:
Q  76 caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcattt 175  Q
    |||||| ||||| |||||||||||||||||||| || | ||||||||| ||   |||||| |   |||||||||| || ||||||| ||| |||| |||     
T  32351760 caaaatcttatacagactccccaccaacgaaataggacgaaaatcattgagcttttgaggactagctactttaggaatgagagcaatgaaagtagtattg 32351661  T
Q  176 ataccttt 183  Q
    ||||||||    
T  32351660 ataccttt 32351653  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 6052311 - 6052423
Alignment:
Q  92 ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacc 191  Q
    ||||||||||| ||||| || | ||| |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| |||||| ||||||| |||      
T  6052311 ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt 6052410  T
Q  192 tcccattcctatg 204  Q
    |||||||||||||    
T  6052411 tcccattcctatg 6052423  T

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Target: scaffold1350 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 204
Target Start/End: Original strand, 1233 - 1366
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| ||| |||||||||||||||||||||| ||| |  |||||||| |||||||  |||||||||| ||| ||||| || |||||||||| ||| ||||    
T  1233 tttgccaatattttataaagactccccaccagcgagacaggtctaaactcattcaaagattgagggctctcaactttcggaataagagcaatgaatgtag 1332  T
Q  171 catttatacctttcgacaacctcccattcctatg 204  Q
     ||||||||| ||||||||| |||||||||||||    
T  1333 aatttataccattcgacaacttcccattcctatg 1366  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 70 - 210
Target Start/End: Complemental strand, 19732442 - 19732302
Alignment:
Q  70 ctttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgta 169  Q
    ||||| |||||||||||| ||||  |||||||||||||| |||| |||||||||||  |   |||| |  ||||||||||| ||||||||||  ||| ||    
T  19732442 ctttgccaaaattttatagagacatcccaccaacgaaatgggtcaaaaatcattcaaagtccgaggactgtctactttaggaataagagcaataaacata 19732343  T
Q  170 gcatttatacctttcgacaacctcccattcctatgaaactc 210  Q
    | ||||||||||||||| ||  | |||||||||||||||||    
T  19732342 gaatttatacctttcgaaaattttccattcctatgaaactc 19732302  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 11585639 - 11585507
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtag 170  Q
    |||| |||||||||||| ||||| |||||||  || || |||| |||||||||||  |||||||| | ||| ||||||||||| | ||| | ||||||||    
T  11585639 tttgccaaaattttatagagacttcccaccagtgagataggtcgaaaatcattcaatgattgaggactctcaactttaggtattaaagcgatgaacgtag 11585540  T
Q  171 catttatacctttcgacaacctcccattcctat 203  Q
     |||||||||||| |||| | | ||||||||||    
T  11585539 aatttataccttttgacagctttccattcctat 11585507  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 5789382 - 5789254
Alignment:
Q  79 aattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttata 178  Q
    ||||||||||||||| |||||||| ||||| ||   |||||||||||  || |  || | ||| |||||| | || ||| ||| |||||||| |||||||    
T  5789382 aattttataaagactacccaccaatgaaatgggctgaaaatcattcaaagactatggactctcaactttaagaatgagaacaatgaacgtagaatttata 5789283  T
Q  179 cctttcgacaacctcccattcctatgaaa 207  Q
    |||||||||||  | |||||||| |||||    
T  5789282 cctttcgacaattttccattcctgtgaaa 5789254  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 17437977 - 17437929
Alignment:
Q  77 aaaattttataaagactccccaccaacgaaatcggtctaaaatcattca 125  Q
    |||| ||||||||||||||||||||| || ||||||| |||||||||||    
T  17437977 aaaaatttataaagactccccaccaatgatatcggtcgaaaatcattca 17437929  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 204
Target Start/End: Complemental strand, 1826989 - 1826861
Alignment:
Q  76 caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcattt 175  Q
    |||||||||||| |  ||||||||||| ||||| ||   ||| |||||||  |||||||| ||  | |||||||| || || || | |||||||| ||||    
T  1826989 caaaattttatacatgctccccaccaaagaaatagggtgaaactcattcaaagattgaggacaagcaactttaggaattagggctatgaacgtagaattt 1826890  T
Q  176 atacctttcgacaacctcccattcctatg 204  Q
    || |||||||| ||  |||||||||||||    
T  1826889 atgcctttcgataatttcccattcctatg 1826861  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 210
Target Start/End: Complemental strand, 20508349 - 20508285
Alignment:
Q  146 ttaggtataagagcaacgaacgtagcatttatacctttcgacaacctcccattcctatgaaactc 210  Q
    ||||| |||||||||| ||||||   |||||| ||||| | |||||| |||||||||||||||||    
T  20508349 ttaggaataagagcaatgaacgtgctatttatccctttggtcaaccttccattcctatgaaactc 20508285  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 23280490 - 23280542
Alignment:
Q  71 tttgtcaaaattttataaagactccccaccaacgaaatcggtctaaaatcatt 123  Q
    ||||||| ||||||||| | |||||||||||| ||||| |||| |||||||||    
T  23280490 tttgtcagaattttatacaaactccccaccaaagaaatgggtcgaaaatcatt 23280542  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 204
Target Start/End: Original strand, 47420496 - 47420624
Alignment:
Q  76 caaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcattt 175  Q
    ||||||||| || | |||||||||||| ||||| || | | | |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| ||||    
T  47420496 caaaattttgtacaaactccccaccaaagaaatagggcgatactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaattt 47420595  T
Q  176 atacctttcgacaacctcccattcctatg 204  Q
    || |||||||  ||| |||||||||||||    
T  47420596 atgcctttcgttaacttcccattcctatg 47420624  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 204
Target Start/End: Original strand, 17722328 - 17722455
Alignment:
Q  77 aaaattttataaagactccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcattta 176  Q
    ||||||||||| |||||||||||||| ||||| || | ||| |||||||  |||||||| |   |||||||||| || || || | |||| ||| ||| |    
T  17722328 aaaattttatacagactccccaccaaagaaatagggcgaaactcattcaacgattgaggactagctactttaggaattagggcgatgaacctagaattaa 17722427  T
Q  177 tacctttcgacaacctcccattcctatg 204  Q
    |||||||||| ||  ||| |||||||||    
T  17722428 tacctttcgataatttcctattcctatg 17722455  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 104275 - 104163
Alignment:
Q  92 ctccccaccaacgaaatcggtctaaaatcattcagggattgagggcactctactttaggtataagagcaacgaacgtagcatttatacctttcgacaacc 191  Q
    ||||||||||| ||||| || | ||| |||||||  ||||||||||   | |||||||| ||||| || | ||| |||| |||||| ||||||| |||      
T  104275 ctccccaccaaagaaatagggcgaaactcattcaacgattgagggctagcaactttaggaataagggcgatgaatgtagaatttatgcctttcgtcaatt 104176  T
Q  192 tcccattcctatg 204  Q
    |||||||||||||    
T  104175 tcccattcctatg 104163  T

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