View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_1 (Length: 1115)
Name: NF1056_low_1
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 704 - 1087
Target Start/End: Original strand, 777305 - 777688
Alignment:
| Q |
704 |
cacattaatttgatgtcacaactcaaccacatgagctacatcgataaattcataaaaatattttttgcttctatattgatatattttgtttattaaacat |
803 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
777305 |
cacattaatttgatgtcacaactcaaccacatgagctacatcgataaattcataaaaatattttttgcttctatcttgatatattatgtttattaaacat |
777404 |
T |
|
| Q |
804 |
ttaagatgttattttcatagtaaaagtgttaatcgttacatttagacatcaagttaaaatcttaaatctttttgatgatggttgtaaaattatcattaat |
903 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
777405 |
ttaagatgttagttttatagtaaaagtgttaatcgtcacatttaggcatcgagttaaaatcttaaatctttttgaggatggttgtaaaattatcattaat |
777504 |
T |
|
| Q |
904 |
gtcaattttattctgaaaaaagtaggatgtataaattttaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaa |
1003 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
777505 |
gtcaattttattctgaaaaaagtaggatgtataaatttcaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaa |
777604 |
T |
|
| Q |
1004 |
atttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaaacggttatatgttaacgtcactact |
1087 |
Q |
| |
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|| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
777605 |
atatgattgtcacgacatacatttaatttgtaaaatgcatttgcatgaaaattgtcaaaacggttatatgttaacgtcactact |
777688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 8458776 - 8458503
Alignment:
| Q |
8 |
caccacagaccacaagagggttcattgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgataacttg |
107 |
Q |
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||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458776 |
caccacaaaccacaagaggagttaatgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgataacttg |
8458677 |
T |
|
| Q |
108 |
ctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcatcaatagattctatcctttatttctt |
206 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
8458676 |
ctcattggccctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatcacttgtcatcaatagattctatcctttgtttctt |
8458577 |
T |
|
| Q |
207 |
tccatcttgttccatttaattattttcttaaagttgtttttagaggtattttcttaaagttattgtcatatttg |
280 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
8458576 |
tctatcttgttccatttaattattttcttaaagttgtttttagaggtattttcttaaagttattgtcgtatttg |
8458503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 5e-93
Query Start/End: Original strand, 323 - 538
Target Start/End: Original strand, 776924 - 777137
Alignment:
| Q |
323 |
ttgtgtgaactaaagcatcttttctagaaaaataattaattttaaagattttttgaattatataacaacaccacaaatgagcatatcataagcttttaaa |
422 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
776924 |
ttgtgtgaactaaagtatcttttctagaaaaataattaattttaaagattttttgaattatataacaacaccacaaatgagcatatcataagcttttaaa |
777023 |
T |
|
| Q |
423 |
aactgaattaaatttcttnnnnnnnnnnntagaatttaaatgttcgccatatgatttcatagttacaaatgaccaatttacatattttgattgcttgatc |
522 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
777024 |
aactgaattaaatttctt--aaaaaaaaatagaatttaaatgttcgccatatgatttcatagttacaaatgaccaatttacatattttgattgcttgatc |
777121 |
T |
|
| Q |
523 |
ataaacataaaacaaa |
538 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
777122 |
ataaacataaaacaaa |
777137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 93 - 284
Target Start/End: Original strand, 776657 - 776849
Alignment:
| Q |
93 |
tgctttgataacttgctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcatcaatagattc |
191 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
776657 |
tgctctgataacttgctcattggctctactacatgaccatgcttttatatatgctttggacttgcctttcatgaggggatcacttgtcatcaatagattc |
776756 |
T |
|
| Q |
192 |
tatcctttatttctttccatcttgttccatttaattattttcttaaagttgtttttagaggtattttcttaaagttattgtcatatttgagag |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
776757 |
tatcctttatttctttccatcttgttccatttaattattttcttaaagttgtttttagaagtattttcttaaagttattgtcatatttgagag |
776849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 322 - 538
Target Start/End: Complemental strand, 8458506 - 8458291
Alignment:
| Q |
322 |
tttgtgtgaactaaagcatcttttctagaaaaataattaattttaaagattttttgaattatataacaacaccacaaatgagcatatcataagcttttaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8458506 |
tttgtgtgaactaaagcatcttttctagaaaaataattaattttaaatattttttgaattatataacaacaccacaaatgagcatatcataagcttttaa |
8458407 |
T |
|
| Q |
422 |
aaactgaattaaatttcttnnnnnnnnnnntagaa-tttaaatgttcgccatatgatttcatagttacaaatgaccaatttacatattttgattgcttga |
520 |
Q |
| |
|
||| | |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458406 |
aaatttaatttaatttctt--aaaaaaaaatagaattttaaatgttcgccatatgatttcatagttacaaatgaccaatttacatattttgattgcttga |
8458309 |
T |
|
| Q |
521 |
tcataaacataaaacaaa |
538 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
8458308 |
tcataaacataaaacaaa |
8458291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 8e-64
Query Start/End: Original strand, 907 - 1085
Target Start/End: Complemental strand, 8458004 - 8457833
Alignment:
| Q |
907 |
aattttattctgaaaaaagtaggatgtataaattttaaaacaatgtttagcgttgtagttatgtttgtataactattaagttttacactttagaaaaatt |
1006 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8458004 |
aattttattcagaaaaaagtaggatgtataaatttcaaaacaatgtttagcgttgcagttatgtttgtataactatta-------cactttagaaaaatt |
8457912 |
T |
|
| Q |
1007 |
tgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaaacggttatatgttaacgtcacta |
1085 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8457911 |
tgattgtcacgatgtacatttaatctgtaaaatgcatttgcatgaaaattgccaaaatggttatatgttaaggtcacta |
8457833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 83 - 284
Target Start/End: Original strand, 817869 - 818066
Alignment:
| Q |
83 |
taataatatgtgctttgataacttgctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcat |
181 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
817869 |
taataatgtatgctttgataatttgctcattggctctactacatgaccatgcttttatatatgctttggacttgcctttcatgaggtgatcacttgtcat |
817968 |
T |
|
| Q |
182 |
caatagattctatcctttatttctttccatcttgttccatttaattattttcttaaagttgtttttagaggtattttcttaaagttattgtcatatttga |
281 |
Q |
| |
|
|||||||||||||| ||| | |||| ||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
817969 |
caatagattctatcttttct---tttctatcttgttccatttaattattgtcttaaagtttttttt--aggtattttcttaaaattattgtcatatttga |
818063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 112; E-Value: 5e-56
Query Start/End: Original strand, 707 - 910
Target Start/End: Complemental strand, 8458237 - 8458032
Alignment:
| Q |
707 |
attaatttgatgtcacaactcaaccacatgagctacatcgataaattcata-aaaatattttttgcttctatat--tgatatattttgtttattaaacat |
803 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| ||||||| | |||||||||||||| |
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|
| T |
8458237 |
attaatttgatgtcacaactcaaccacatgagctacatcgataaattcatacaaaatattgtttgcctctatatcttgatatactatgtttattaaacat |
8458138 |
T |
|
| Q |
804 |
ttaagatgttattttcatagtaaaagtgttaatcgttacatttagacatcaagttaaaatcttaaatctttttgatgatggttgtaaaattatcattaat |
903 |
Q |
| |
|
||||||||||| ||| || |||||||||||||| || |||||||| ||| |||||||||||||||| | ||| | |||||||| ||||||||| ||||| |
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|
| T |
8458137 |
ttaagatgttagtttaatggtaaaagtgttaattgtcacatttaggcatagagttaaaatcttaaat-tgttttaggatggttgaaaaattatcgttaat |
8458039 |
T |
|
| Q |
904 |
gtcaatt |
910 |
Q |
| |
|
||||||| |
|
|
| T |
8458038 |
gtcaatt |
8458032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 776544 - 776625
Alignment:
| Q |
8 |
caccacagaccacaagagggttcattgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataat |
89 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |
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|
| T |
776544 |
caccacaaaccacaagagggttcattgatttaatacgcataattaataatgtattttttctttttgttgctaatataataat |
776625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1021 - 1062
Target Start/End: Original strand, 818805 - 818846
Alignment:
| Q |
1021 |
tacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
1062 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
818805 |
tacatttaatttgcaaaatgcatttgcatgaaaaatgccaaa |
818846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 963 - 1063
Target Start/End: Original strand, 830213 - 830307
Alignment:
| Q |
963 |
agttatgtttgtataactattaagttttacactttagaaaaatttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
1062 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | ||||| | || ||| || ||||||||||||| |||||||||||||||||||| || |||| |
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|
| T |
830213 |
agttatgtttgtataacaattaagtt--acacttaaaaaaaaatgga----cacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaa |
830306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 963 - 1063
Target Start/End: Original strand, 1195393 - 1195487
Alignment:
| Q |
963 |
agttatgtttgtataactattaagttttacactttagaaaaatttgattgtcacgatatacatttaatttgtaaaatgcatttgcatgaaaattgccaaa |
1062 |
Q |
| |
|
||||||||||||||||| |||||||| |||||| | ||||| | || ||| || ||||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
1195393 |
agttatgtttgtataacaattaagtt--acacttaaaaaaaaatgga----cacaatgtacatttaatttgcaaaatgcatttgcatgaaaaatgtcaaa |
1195486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 817837 - 817884
Alignment:
| Q |
19 |
acaagagggttcattgatttaatacgcataattaacaatgtatgcttt |
66 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||| |
|
|
| T |
817837 |
acaagaggatttgttgatttaatacgcataattaataatgtatgcttt |
817884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 386
Target Start/End: Original strand, 818121 - 818163
Alignment:
| Q |
344 |
ttctagaaaaataattaattttaaagattttttgaattatata |
386 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||| |
|
|
| T |
818121 |
ttctagaaaaataaataattttaaagaatttttgaattgtata |
818163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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