View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_105 (Length: 223)

Name: NF1056_low_105

Description: NF1056

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1056_low_105

[»] chr1 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 20 - 210

Target Start/End: Original strand, 29947689 - 29947879

Alignment:

Q	20	tcaggctcatcacaccgccaactgctatcagaaaggtcgcctctaaaatcagactcttgatcagaagattccttccggctgtagcaatccatgtcatcgt	119	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|
T	29947689	tcaggctcatcacaccgccaactgctatcagaaaggtcgcctctaaaatcagactcttgatcagaagattccttccggctgtagcgatccatgccatcgt	29947788	T

Q	120	tgtcattgaatatcaacttaagagcctgcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29947789	tgtcattgaatatcaacttaagagcctgcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagc	29947879	T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 40; E-Value: 0.00000000000008

Query Start/End: Original strand, 120 - 211

Target Start/End: Complemental strand, 39777071 - 39776980

Alignment:

Q	120	tgtcattgaatatcaacttaagagcctgcacaacttcgcccataaagggtctcttagtgacctccaggtgaacacacattgaagcaacagct	211	Q
		\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|
T	39777071	tgtcattgtatattaatttaagagcctgcacaacttctcccataaaaggtctctgtgtcacctcggagtgaacacacattgacgcaatagct	39776980	T

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