View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_11 (Length: 621)
Name: NF1056_low_11
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 60 - 611
Target Start/End: Complemental strand, 16461824 - 16461302
Alignment:
| Q |
60 |
ctcttggggaacctttgggatcttttttattatagtatcttgctcctatcaattttctgcagttgttttaagaaattttaattttaaatagaatataaaa |
159 |
Q |
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| T |
16461824 |
ctcttggggaacctttgggatcttttttattatagtatcttgctcctatcaattttctgcagttgttttaagaaattttaattttaaatagaacataaaa |
16461725 |
T |
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| Q |
160 |
tcgatacgaattttgtcaaaatccaaaatatgataatgaaaagagttagcaatagatgtgagcttttggtgcaacatgtataatgcattagtagcttaaa |
259 |
Q |
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| T |
16461724 |
tcgatgcgaattttgtcaaaatccataatatgataatgaaaagagttagcaatagatgtgagcttttggtgcaacatgtataatgcattagtagcttaaa |
16461625 |
T |
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| Q |
260 |
gaaagttgcacttttccaattttcatattttattccatcccttagggcattcattagcatgtttcagtgaaaagtatgatgacctgttgcaattagattt |
359 |
Q |
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| T |
16461624 |
gaaagttgcact--------------------ttccatcccttaggacattcattagcatgtttcagtgaaaagtatgatgacctgttgcaattagattt |
16461545 |
T |
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| Q |
360 |
cttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtgactctggccatatcccttga |
459 |
Q |
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| T |
16461544 |
cttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtgactctggccatatcccttga |
16461445 |
T |
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| Q |
460 |
tgcagaacagaaatatccatagtaaaattcaataatattcaagcaaattg-ttcataatatggaagaaaattattgctgcacattaagtctacattctga |
558 |
Q |
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| T |
16461444 |
tgcagaacagaaatatccatagtaaa----------attcaagcaaattgtttcataatatggaagaaaattgttgctgaacattaggtctacattctga |
16461355 |
T |
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| Q |
559 |
taacatttgacattattgaatgttcaacatggatttactctttagaagaataa |
611 |
Q |
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| T |
16461354 |
taacatttgacattattgaatgttcaacatcgatttactctttagaagaataa |
16461302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 341 - 520
Target Start/End: Complemental strand, 16491507 - 16491328
Alignment:
| Q |
341 |
acctgttgcaattagatttcttgaaatcatgagcctccatgcaaactcctttccatcttgatggaatcttccctataccctcatctttgaaacttggtga |
440 |
Q |
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| T |
16491507 |
acctgttgcaatttgatttcttgaaatcatgaccctccatgcaaattcctttccatcttgaaggaattttccctataccctcatctgtgaaacttggtga |
16491408 |
T |
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| Q |
441 |
ctctggccatatcccttgatgcagaacagaaatatccatagtaaaattcaataatattcaagcaaattgttcataatatg |
520 |
Q |
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| T |
16491407 |
ctctggccatatcccttggtgcagaacagagataggtattatataattgaataatattcaaacaaattgttcacaatatg |
16491328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 29947689 - 29947747
Alignment:
| Q |
7 |
tcaggctcatcacaccgccaactgctatcagaaaggtcgcctctaaaatcagactcttg |
65 |
Q |
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| T |
29947689 |
tcaggctcatcacaccgccaactgctatcagaaaggtcgcctctaaaatcagactcttg |
29947747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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