View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_12 (Length: 594)
Name: NF1056_low_12
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 91 - 336
Target Start/End: Original strand, 15070771 - 15071016
Alignment:
| Q |
91 |
caaaggaaactctcactctttttccagaagttccaacattttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15070771 |
caaaggaaactctcactctttttccagaagttccaacattttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacat |
15070870 |
T |
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| Q |
191 |
gactcttcatgttggtgatggagaagttgatgtggaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcatggacaaatt |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15070871 |
gactcttcatgttggtgatggagaagttgatgtggaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcatggacaaatt |
15070970 |
T |
|
| Q |
291 |
aagctagaatctctcaacttaatatgtgtcttgtcattttgtaacc |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15070971 |
aagctagaatctctcaacttaatatgtgtcttgtcattttgtaacc |
15071016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 91 - 308
Target Start/End: Original strand, 15064049 - 15064266
Alignment:
| Q |
91 |
caaaggaaactctcactctttttccagaagttccaacattttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15064049 |
caaaggaaactctcactctttttccagaagttccaacattttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttccat |
15064148 |
T |
|
| Q |
191 |
gactcttcatgttggtgatggagaagttgatgtggaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcatggacaaatt |
290 |
Q |
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| T |
15064149 |
gactcttcatgttggtgatggagaagttgatgtggaacttcgtttcggtttaaattagtgagactttgaagcataggtgtaatgcatgcatggacaaatt |
15064248 |
T |
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| Q |
291 |
aagctagaatctctcaac |
308 |
Q |
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|||||||||||||||||| |
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| T |
15064249 |
aagctagaatctctcaac |
15064266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 409 - 583
Target Start/End: Original strand, 15076234 - 15076409
Alignment:
| Q |
409 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaatgttgtgttgagctacattgtgatccttaatatta |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15076234 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaat-ttgtgttgagctacattgtgatccttaatatta |
15076332 |
T |
|
| Q |
509 |
tgaaaaatcgcacttaaatattttgtatgnnnnnnnctttgg-ttatga-tatctttaacatctcattattcttcat |
583 |
Q |
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| T |
15076333 |
tgaaaaatcgcacttaaatattttgtatgtttttttctttggattatgattatctttaacatctcattattcttcat |
15076409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 409 - 509
Target Start/End: Original strand, 15064408 - 15064508
Alignment:
| Q |
409 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaatcttagtcaaatgttgtgttgagctacattgtgatccttaatatta |
508 |
Q |
| |
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||||| |||||| || |||||||| || ||||||||||||||||||| ||| ||||| ||||||||||||||| | | |||||||||||||| |||||| |
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| T |
15064408 |
cttgctagttttactcatgaatattctgttcagttaccttgatttgataaaatatcttggtcaaatgttgtgttcaccaacattgtgatccttgatatta |
15064507 |
T |
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| Q |
509 |
t |
509 |
Q |
| |
|
| |
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|
| T |
15064508 |
t |
15064508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 91 - 302
Target Start/End: Complemental strand, 30854641 - 30854421
Alignment:
| Q |
91 |
caaaggaaactctcactctttttccagaagttccaacattttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacat |
190 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||| | ||| ||||||||||||||| || || || ||||||||||||||||||||||||| ||| |
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| T |
30854641 |
caaaggaaactcttgctcttttcccaattgttccaacatatcatgaaggagaagctagcaggagaaacaataccaacaactatgaagcaagcacttccat |
30854542 |
T |
|
| Q |
191 |
gactcttca---------tgttggtgatggagaagttgatgtggaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcat |
281 |
Q |
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|||||||| || ||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
30854541 |
gactcttccgagtccttctgctggtgatggaggagttgatttggaacttcgtttgggtttatattagtgagactttgaagcataggtgtcatgcatgcat |
30854442 |
T |
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| Q |
282 |
ggacaaattaagctagaatct |
302 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
30854441 |
ggacaaattaagctggaatct |
30854421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 131 - 304
Target Start/End: Complemental strand, 30878794 - 30878618
Alignment:
| Q |
131 |
ttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacatgactcttcat-gt-----tggtgatggagaagttgatgtg |
224 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| | | || || |||||||| ||||||| || |
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| T |
30878794 |
ttatggagaagaagctagcagcagcaa---caccaacaactatgaagcaatcacttccatgactctgcctagtgcttctgatgatggaggagttgatttg |
30878698 |
T |
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| Q |
225 |
gaacttcgtttgggtttaaattagtgagactttgaagcataggtgttatgcatgcatggacaaattaagctagaatctct |
304 |
Q |
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||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30878697 |
gaacttcgtttgggtttgtctaagtgaaactttgaagcataggtgtcatgcatgcatggacaaattaagctagaatctct |
30878618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 409 - 520
Target Start/End: Complemental strand, 30854278 - 30854165
Alignment:
| Q |
409 |
cttgcaagttttcttcctgaatattgtggtcagttaccttgatttgatgaaaaa--tcttagtcaaatgttgtgttgagctacattgtgatccttaatat |
506 |
Q |
| |
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||||||||||||| |||| |||||| || ||| ||||||||||||||| ||||| ||| |||||||||||| ||| |||||||||||||||||| |||| |
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| T |
30854278 |
cttgcaagttttcctccttaatattttgttcaattaccttgatttgataaaaaaaatctcagtcaaatgttgagttcagctacattgtgatccttcatat |
30854179 |
T |
|
| Q |
507 |
tatgaaaaatcgca |
520 |
Q |
| |
|
||| |||||||||| |
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|
| T |
30854178 |
tataaaaaatcgca |
30854165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 196
Target Start/End: Complemental strand, 30859054 - 30858989
Alignment:
| Q |
131 |
ttatggaggagaagctagcagtagcaagaacaccaacaactatgaagcaagcacttacatgactct |
196 |
Q |
| |
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||||||||| |||||||| ||||| || |||||||||||||||| |||||||| ||||||||| |
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| T |
30859054 |
ttatggaggggaagctagtttcagcaacaaaaccaacaactatgaagaaagcacttccatgactct |
30858989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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