View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1056_low_13 (Length: 561)

Name: NF1056_low_13
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1056_low_13
NF1056_low_13
[»] chr8 (5 HSPs)
chr8 (219-548)||(38122132-38122461)
chr8 (1-125)||(38122556-38122684)
chr8 (329-464)||(38607768-38607900)
chr8 (343-464)||(38792564-38792683)
chr8 (414-464)||(38607234-38607284)
[»] chr4 (1 HSPs)
chr4 (332-552)||(28731702-28731914)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 219 - 548
Target Start/End: Complemental strand, 38122461 - 38122132
Alignment:
Q  219 tagcttaatttttctccttnnnnnnnngagcttcaatttttctcgtttcattttaataggtaaaaataaaatagtaagatatgaatatctttcgcacgct 318  Q
    |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38122461 tagcttaatttttctccttaaaaaaaagagcttcaatttttctcgtttcattttaataggtaaaaataaaatagtaagatatgaatatctttcgcatgct 38122362  T
Q  319 tacatctcttaagattcaaaaacgtttaaatctataacaaccgcgtaacaaaatcacacgcttacaatactctcttctaaccgtttaatttccccgcgcg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38122361 tacatctcttaagattcaaaaacgtttaaatctataacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttaatttccccgcgcg 38122262  T
Q  419 cgcgtatataaatacttcaccctgcaattcatcttcattcgattcaattcacactcgaattcactctcttgagacttgaaacctccgaatcttcttaacc 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38122261 cgcgtatataaatacttcaccctgcaattcatcttcattcgattcaattcacactcgaattcactctcttgagacttgaaacctctgaatcttcttaacc 38122162  T
Q  519 accatggaaaactcttcaaccttttcctct 548  Q
    ||||||||||||||||||||||||||||||    
T  38122161 accatggaaaactcttcaaccttttcctct 38122132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 38122684 - 38122556
Alignment:
Q  1 ctaaaaaatgtttagatgagatcatacaaatcttttctaacttaactaaagtcatgtg----aatataatcttagacactcaacaacatttaaacactta 96  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||    |||||||||| ||||||||| || ||||||||||||||    
T  38122684 ctaaaaaatgtttagatgagattatacgagtcttttctaacttaactaaagtcatgtgttcgaatataatctcagacactcagcagcatttaaacactta 38122585  T
Q  97 taaaaagtttactgtttatttaggtccac 125  Q
    ||||||||||| |||||||||||||||||    
T  38122584 taaaaagtttattgtttatttaggtccac 38122556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 329 - 464
Target Start/End: Original strand, 38607768 - 38607900
Alignment:
Q  329 aagattcaaaaacgtttaaatctataacaaccgcgtaacaaaatcacacgcttacaatactctcttctaaccgtttaatttccccgcgcgcgcgtatata 428  Q
    ||||||| ||||| |||||| || |||||||||||||||||| ||||||| |||||| | ||||| ||||| |||| | | |||||||||||||||||||    
T  38607768 aagattcgaaaac-tttaaacctctaacaaccgcgtaacaaactcacacgattacaaaa-tctct-ctaacagtttcactcccccgcgcgcgcgtatata 38607864  T
Q  429 aatacttcaccctgcaattcatcttcattcgattca 464  Q
    | |||||||| ||||| |||||| || ||| |||||    
T  38607865 agtacttcactctgcatttcatcctcgttccattca 38607900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 343 - 464
Target Start/End: Original strand, 38792564 - 38792683
Alignment:
Q  343 tttaaatctataacaaccgcgtaacaaaatcacacgcttacaatactctcttctaaccgtttaatttccccgcgcgcgcgtatataaatacttcaccctg 442  Q
    |||||| || |||||||||||||||||| ||||||| |||||| | ||||| ||||| |||| | | |||||||||||||||||||| |||||||| |||    
T  38792564 tttaaacctctaacaaccgcgtaacaaactcacacgattacaaaa-tctct-ctaacagtttcactcccccgcgcgcgcgtatataagtacttcactctg 38792661  T
Q  443 caattcatcttcattcgattca 464  Q
    || |||||| || ||| |||||    
T  38792662 catttcatcctcgttccattca 38792683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 464
Target Start/End: Original strand, 38607234 - 38607284
Alignment:
Q  414 gcgcgcgcgtatataaatacttcaccctgcaattcatcttcattcgattca 464  Q
    |||||||||||||||| |||||||| ||||| |||||| |||||| |||||    
T  38607234 gcgcgcgcgtatataagtacttcactctgcatttcatcctcattccattca 38607284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 332 - 552
Target Start/End: Complemental strand, 28731914 - 28731702
Alignment:
Q  332 attcaaaaacgtttaaatctataacaaccgcgtaacaaaatcacacgcttacaatactctcttctaaccgtttaatttccccgcgcgcgcgtatataaat 431  Q
    |||| ||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28731914 attcgaaatcgtttaaatctagaacaaccgcgtaacaaactaacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaat 28731815  T
Q  432 acttcaccctgcaattcatcttcattcgattcaattcacactcgaattcactctcttgagacttgaaacctccgaatcttcttaaccaccatggaaaact 531  Q
    ||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||        ||||||||| ||| ||||||||||||    
T  28731814 acttcaccctgcatttcatcatcattccattcatttcacactcgaattcactctcttgagacttga--------aatcttcttcaccgccatggaaaact 28731723  T
Q  532 cttcaaccttttcctctctgc 552  Q
    |||||||||||||||||||||    
T  28731722 cttcaaccttttcctctctgc 28731702  T

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