View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_14 (Length: 558)
Name: NF1056_low_14
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 7 - 530
Target Start/End: Complemental strand, 56378842 - 56378307
Alignment:
| Q |
7 |
gcaccacagattcctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaacct |
106 |
Q |
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| T |
56378842 |
gcaccacagattcctcttgcttttgaaatttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaacct |
56378743 |
T |
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| Q |
107 |
tttcttcatcactacctcctgctgctgctgctgttgatgatg---------catatgtagtctacctgctgcctcttcttgttcatcagattcagaaggt |
197 |
Q |
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| T |
56378742 |
tttcttcatcactacctcctgctgctgctgctgttgatgatgatgatgatgcatatgtagtctacctgctgcctcttcttgttcatcagattcagaaggt |
56378643 |
T |
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| Q |
198 |
atgttgtagttgaatggcatgatgatgtggccatgtccatgaggtggcgctacagctctagaaggaagaatgttgttgtt---acctgttgctgctgctg |
294 |
Q |
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| T |
56378642 |
atgttgtagttgaatggcatgatgatgtggccatgtccatgaggtggcgctacagctctagaaggaagaatgttgttgttgttacctgttgctgctgctg |
56378543 |
T |
|
| Q |
295 |
atgctgtattaggaatagagtggtggtggtggtagccaagaccaagagcctgatcaggaagaggtaacatgaatttcctcatgctgtggtggtgctgctg |
394 |
Q |
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| T |
56378542 |
atgctgtattaggagtagagtggtggtggtggtagccaagaccaagagcctgatcaggaagaggtaacatgaatttcctcatgctgtggtggtgctgctg |
56378443 |
T |
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| Q |
395 |
tctgttgaagttgaaattgaaggctgagtgatggtggtagttctcctgatcctcagtctcaccttggatttcttttctgtggaagtttctgtgacaatgg |
494 |
Q |
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| T |
56378442 |
tctgttgaagttgaagttgaaggctgagtgatggtggtagttctcctgatcctcagtctcaccttggacttcttttctgtggaagtttctgtgacaatgg |
56378343 |
T |
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| Q |
495 |
caggcagagcagttgagtgcttcaatggttccttgt |
530 |
Q |
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| T |
56378342 |
caggcagagcagttgagtgcttcaatggttccttgt |
56378307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 2494351 - 2494418
Alignment:
| Q |
36 |
ttccatccaactttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcctgaa |
103 |
Q |
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| T |
2494351 |
ttccacccaactttctcagcaaatttcagcatcttatccttctgatcttgtgtaaactttgtcctgaa |
2494418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 14021521 - 14021574
Alignment:
| Q |
47 |
tttctcagcaaagttcaacattttctccttctgttcctgtgtgaattttgtcct |
100 |
Q |
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||||||||| || | |||||| || |||||||||||||| |||||||||||||| |
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| T |
14021521 |
tttctcagctaactccaacatcttatccttctgttcctgcgtgaattttgtcct |
14021574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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