View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_15 (Length: 523)
Name: NF1056_low_15
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 42141247 - 42140989
Alignment:
| Q |
30 |
aattggaccatgctttgtacccaaataaacccgttcggtctatttttatcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgta |
129 |
Q |
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| T |
42141247 |
aattggaccatgctttgtacccaaataaacccgttcggtctatttt-atcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgta |
42141149 |
T |
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| Q |
130 |
tgtaagtttttagagtgttgcctaactgaggtgttttggttagtaaaaaacattgttgtttggctatggagctaacgcgacaggacgaggtggccgtgaa |
229 |
Q |
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| T |
42141148 |
tgtaaatttttagattggtgcctatctgaggtgttttggttagtaaaaaacattgttgtttggctatggagttaacgcgacaggacgaggtggccgtgaa |
42141049 |
T |
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| Q |
230 |
ccttatgggtcagcctagaaatgtggcagcgtattataatgtcgattagggcattagcgg |
289 |
Q |
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| T |
42141048 |
ccttatgggtcagcctagaaatgtggcagcgtattataatgtcgattagggcattagcgg |
42140989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 423
Target Start/End: Complemental strand, 42140994 - 42140879
Alignment:
| Q |
306 |
tagcggattaaggctttctttgatnnnnnnnngatagtaaattgttgataaactaacttatagcggttagtattannnnnnnnataaatagaaattattg |
405 |
Q |
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| T |
42140994 |
tagcggattaaggctttctttgataaaaaaa-gatagtaaattgttgataaactaacttatagctgttagtatt-ttttttttataaatagaaattattg |
42140897 |
T |
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| Q |
406 |
gtagactcttccatcaag |
423 |
Q |
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| T |
42140896 |
gtagactcttccatcaag |
42140879 |
T |
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