View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_16 (Length: 522)
Name: NF1056_low_16
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 30 - 422
Target Start/End: Complemental strand, 42141247 - 42140879
Alignment:
| Q |
30 |
aattggaccatgctttgtacccaaataaacccgttcggtctatttttatcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgta |
129 |
Q |
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| T |
42141247 |
aattggaccatgctttgtacccaaataaacccgttcggtctatttt-atcctcaaaatttgtagccatactggtatcaattacattctcgtgtctatgta |
42141149 |
T |
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| Q |
130 |
tgtaagtttttagagtgttgcctaactgaggtgttttggttagtaaaaaacattgttgtttggctatggagctaacgcgacaggacgaggtggccgtgaa |
229 |
Q |
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| T |
42141148 |
tgtaaatttttagattggtgcctatctgaggtgttttggttagtaaaaaacattgttgtttggctatggagttaacgcgacaggacgaggtggccgtgaa |
42141049 |
T |
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| Q |
230 |
ccttatgggtcagcctagaaatgtggcagcgtattataatgtcgattagggcattagcgggctaaagcttaaaagatagcggattaaggctttctttgat |
329 |
Q |
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| T |
42141048 |
ccttatgggtcagcctagaaatgtggcagcgtattataatgtcgattagggcattagcg----------------------gattaaggctttctttgat |
42140971 |
T |
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| Q |
330 |
nnnnnnngatagtaaattgttgataaactaacttatagcggttagtattannnnnnnnataaatagaaattattggtagactcttccatcaag |
422 |
Q |
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| T |
42140970 |
aaaaaaagatagtaaattgttgataaactaacttatagctgttagtatt-ttttttttataaatagaaattattggtagactcttccatcaag |
42140879 |
T |
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