View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_17 (Length: 516)
Name: NF1056_low_17
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 241 - 499
Target Start/End: Original strand, 4853260 - 4853516
Alignment:
| Q |
241 |
ggaaaagttttcatatgaggttgtatgttgaaattcgtgattttcaaacaaaaataaaaatttaaacctagatcataagtcgtaagtttttgatgatatt |
340 |
Q |
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| T |
4853260 |
ggaaaagttttcatatgaggttgtatgttgaaattcgtgattttcaaaaaaaaaaaaaaaattaaacctagatcataagtcgcaagtttttgatgatatt |
4853359 |
T |
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| Q |
341 |
gtattctctactttcacggggaacctgcattcacgcattcatcttaagtttacaaaatgcaaattttaattttaaaatttgcaatgcaaaacatgaattt |
440 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4853360 |
gtattctctactttcacgggaaacccgcattcacgcattcatcttaagtttacaaaatgcaaattttaattttaaaatttgaaatgcaaaacatgaattt |
4853459 |
T |
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| Q |
441 |
agtcatgtatatcgatcgaacgaccattgatataccgaatgcatgaatgttggatatct |
499 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4853460 |
agtc--gtatatcgatcgaacgaccattgatataccgaatgcatgaatgttggatatct |
4853516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 4853065 - 4853270
Alignment:
| Q |
14 |
gaaacaccgatatgataatctttgtatggtccagtacttgatatatgtccctttttgcattatggttattgaagttttgacactgtcttttacgtttctc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4853065 |
gaaacaccgatatgataatctttgtatggtccagtacttgatatatgtccctttttgcattatggttattgaagttttgacactgtcttttacgtttctc |
4853164 |
T |
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| Q |
114 |
gtacatatgaatgctgattttggcctttttatgatgagcctattcatgttctatgaaataaaagctctttgcactataaaaagtaaaccaaaattggaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4853165 |
gtacatatgaatgctgattttggcctttttatgatgagcctattcatgttctatgaaataaaagctctttgcactataaaaagtaaaccaaaattggaaa |
4853264 |
T |
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| Q |
214 |
agtttt |
219 |
Q |
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|||||| |
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| T |
4853265 |
agtttt |
4853270 |
T |
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