View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1056_low_18 (Length: 516)
Name: NF1056_low_18
Description: NF1056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1056_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 62 - 389
Target Start/End: Original strand, 33652198 - 33652528
Alignment:
| Q |
62 |
actaataacctttaatatttcattacatgaacttatacaattcgatacttaaaaggacaagacaaagcattctaaattcacatagaatctatatttagat |
161 |
Q |
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| T |
33652198 |
actaataacctttaatatttcattacatgaacttatacaattcgatacttaaaaggacaagacaaagcattctaaattcacatagaatttatatttagat |
33652297 |
T |
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| Q |
162 |
caaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaacatgaaaatatacatggaatactaaaatagtaccaaccagaa |
261 |
Q |
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| T |
33652298 |
caaccatcactaattagtatagtatctatcattgaatacctcataggaaatcataaaacatgaaaataaacatggaatactaaaatagtaccaaccagaa |
33652397 |
T |
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| Q |
262 |
ttttctgcaaaactatccat---ttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcatacgaa |
358 |
Q |
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| T |
33652398 |
ttttctgcaaaactatccatcagttaaaaccatgaatgatattaaaacgaaatcaaacatttttgtagaatttactagagataaccaattagcatacgaa |
33652497 |
T |
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| Q |
359 |
ggcgatgcaattggtcccatatcattgaata |
389 |
Q |
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| T |
33652498 |
ggcgatgcaattggtcccatatcattgaata |
33652528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 184 - 374
Target Start/End: Original strand, 4365381 - 4365576
Alignment:
| Q |
184 |
tatctatcattgaatacctcataggaaatcataaaacatgaaaatatacatggaatactaaaatagtaccaaccagaat-tttctgcaaaactatccat- |
281 |
Q |
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| T |
4365381 |
tatctatcattgaataccttatagaaaggtataaaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatccttc |
4365480 |
T |
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| Q |
282 |
--ttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaatttattagaaataaccaattagcatacgaaggcgatgcaattggtc |
374 |
Q |
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| T |
4365481 |
aattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaatttattggagataaccaattaacatacgaaggagatgcagttggtc |
4365576 |
T |
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